| http://purl.uniprot.org/unirules/MF_03036#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:797397 up:source unirule:MF_03036 .
_:797398 up:source unirule:MF_03036 .
_:797399 up:source unirule:MF_03036 .
_:797400 up:source unirule:MF_03036 .
_:797401 up:source unirule:MF_03036 .
_:797402 up:source unirule:MF_03036 .
_:797403 up:source unirule:MF_03036 .
_:797404 up:source unirule:MF_03036 .
_:797405 up:source unirule:MF_03036 .
_:797406 up:source unirule:MF_03036 .
_:797407 up:source unirule:MF_03036 .
_:797408 up:source unirule:MF_03036 .
_:797409 up:source unirule:MF_03036 .
_:797410 up:source unirule:MF_03036 .
_:797411 up:source unirule:MF_03036 .
_:797412 up:source unirule:MF_03036 .
_:797413 up:source unirule:MF_03036 .
_:797414 up:source unirule:MF_03036 .
_:797415 up:source unirule:MF_03036 .
_:797416 up:source unirule:MF_03036 .
_:797417 up:source unirule:MF_03036 .
_:797418 up:source unirule:MF_03036 .
_:797419 up:source unirule:MF_03036 .
?this up:annotation ?annotation0 ,
?annotation2 ,
?annotation4 ,
?annotation5 ;
up:classifiedWith GO:0009116 ,
GO:0016799 ,
keyword:326 ,
keyword:378 ,
keyword:546 .
?annotation0 up:activity ?activity1 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity1 up:catalyticActivity .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Monomer and homodimer.' .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment "Belongs to the 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 family." .
?case6 up:alternativeName ?name8 ;
up:classifiedWith GO:0042803 ;
up:recommendedName ?name7 .
?name7 up:ecName '3.2.2.-' ;
up:fullName "2'-deoxynucleoside 5'-phosphate N-hydrolase 1" ;
rdf:type up:Structured_Name .
?name8 up:fullName 'c-Myc-responsive protein RCL' ;
rdf:type up:Structured_Name .
?case9 up:classifiedWith GO:0005634 ,
GO:0005737 ,
keyword:539 ,
keyword:963 .
?case11 up:recommendedName ?name12 .
?name12 up:ecName '3.2.2.-' ;
up:fullName "Putative 2'-deoxynucleoside 5'-phosphate N-hydrolase 1" ;
rdf:type up:Structured_Name .
?case13 up:recommendedName ?name14 .
?name14 up:ecName '3.2.2.-' ;
up:fullName "2'-deoxynucleoside 5'-phosphate N-hydrolase 1" ;
rdf:type up:Structured_Name .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb17 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf ?molecule20 .
?molecule20 rdfs:label 'substrate' .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf ?molecule28 .
?molecule28 rdfs:label 'substrate' .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb33 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf ?molecule36 .
?molecule36 rdfs:label 'substrate' .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb41 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf ?molecule44 .
?molecule44 rdfs:label 'substrate' .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
rdf:type up:Initiator_Methionine_Annotation ;
rdfs:comment 'Removed' .
?pfsb49 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
_:797420 a rdf:Statement ;
up:attribution _:797397 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:797421 a rdf:Statement ;
up:attribution _:797398 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:797422 a rdf:Statement ;
up:attribution _:797399 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:797423 a rdf:Statement ;
up:attribution _:797400 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:797424 a rdf:Statement ;
up:attribution _:797401 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:326 .
_:797425 a rdf:Statement ;
up:attribution _:797402 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:797426 a rdf:Statement ;
up:attribution _:797403 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:546 .
_:797427 a rdf:Statement ;
up:attribution _:797404 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016799 .
_:797428 a rdf:Statement ;
up:attribution _:797405 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009116 .
_:797429 a rdf:Statement ;
up:attribution _:797406 ;
rdf:subject ?case6 ;
rdf:predicate up:recommendedName ;
rdf:object ?name7 .
_:797430 a rdf:Statement ;
up:attribution _:797407 ;
rdf:subject ?case6 ;
rdf:predicate up:alternativeName ;
rdf:object ?name8 .
_:797431 a rdf:Statement ;
up:attribution _:797408 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042803 .
_:797432 a rdf:Statement ;
up:attribution _:797409 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:797433 a rdf:Statement ;
up:attribution _:797410 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:539 .
_:797434 a rdf:Statement ;
up:attribution _:797411 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005634 .
_:797435 a rdf:Statement ;
up:attribution _:797412 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:797436 a rdf:Statement ;
up:attribution _:797413 ;
rdf:subject ?case11 ;
rdf:predicate up:recommendedName ;
rdf:object ?name12 .
_:797437 a rdf:Statement ;
up:attribution _:797414 ;
rdf:subject ?case13 ;
rdf:predicate up:recommendedName ;
rdf:object ?name14 .
_:797438 a rdf:Statement ;
up:source unirule:MF_03036 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:797439 a rdf:Statement ;
up:attribution _:797415 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:797440 a rdf:Statement ;
up:source unirule:MF_03036 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:797441 a rdf:Statement ;
up:attribution _:797416 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:797442 a rdf:Statement ;
up:source unirule:MF_03036 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:797443 a rdf:Statement ;
up:attribution _:797417 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:797444 a rdf:Statement ;
up:source unirule:MF_03036 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:797445 a rdf:Statement ;
up:attribution _:797418 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:797446 a rdf:Statement ;
up:source unirule:MF_03036 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:797447 a rdf:Statement ;
up:attribution _:797419 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03036
#Rule MF_03036 Created by:? on:2009-06-02 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon53 {taxon:2 taxon:2759 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03036 .
?thisOrganism rdfs:subClassOf+ ?supertaxon53 .
BIND(URI(CONCAT(STR(?this), '#MF_03036a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03036a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03036a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_03036a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch58 faldo:location ?templateMotifSequenceMatchRegionO3582059 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO3582061 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO35820MF_0303654 .
?templateMotifSequenceMatchRegionO3582059 faldo:begin ?templateMotifSequenceMatchBeginO3582060 .
?templateMotifSequenceMatchBeginO3582060 faldo:position ?templateMotifSequenceMatchBeginPositionO3582055 ;
faldo:reference isoform:O35820-1 .
?templateMotifSequenceProfileAlignmentOperationO3582061 edam:has_input signature:MF_03036 ;
rdf:type edam:operation_0300 .
?targetMotifMatch62 faldo:location ?targetMotifMatchRegionMatch63 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0303665 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO35820MF_0303656 .
?targetMotifMatchRegionMatch63 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0303664 .
?targetMotifMatchRegionMatchBeginMF_0303664 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0303657 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0303665 edam:has_input signature:MF_03036 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO35820MF_0303654, 1, (STRLEN(?templateMotifCigarO35820MF_0303654) - STRLEN(REPLACE(?templateMotifCigarO35820MF_0303654, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionO3582055) + 1)), '}'), '')))), '[a-z]', '')) AS ?step166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO35820MF_0303656, 1, (STRLEN(?targetMotifMatchCigarO35820MF_0303656) - STRLEN(REPLACE(?targetMotifMatchCigarO35820MF_0303656, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO35820MF_0303656, 1, (STRLEN(?targetMotifMatchCigarO35820MF_0303656) - STRLEN(REPLACE(?targetMotifMatchCigarO35820MF_0303656, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), '')))), '[^-]', ''))) AS ?step267) .
BIND(((?step267 + ?targetMotifMatchRegionMatchBeginPositionMF_0303657) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO35820MF_0303654, 1, (STRLEN(?templateMotifCigarO35820MF_0303654) - STRLEN(REPLACE(?templateMotifCigarO35820MF_0303654, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionO3582055) + 1)), '}'), '')))), '[a-z]', '')) AS ?step168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO35820MF_0303656, 1, (STRLEN(?targetMotifMatchCigarO35820MF_0303656) - STRLEN(REPLACE(?targetMotifMatchCigarO35820MF_0303656, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO35820MF_0303656, 1, (STRLEN(?targetMotifMatchCigarO35820MF_0303656) - STRLEN(REPLACE(?targetMotifMatchCigarO35820MF_0303656, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), '')))), '[^-]', ''))) AS ?step269) .
BIND(((?step269 + ?targetMotifMatchRegionMatchBeginPositionMF_0303657) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse18) .
FILTER (REGEX('[YF][ARNDCQEGHILKMFPSTWYVBZJUOX][CS]GS[IM]R', SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03036a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch75 faldo:location ?templateMotifSequenceMatchRegionO3582076 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO3582078 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO35820MF_0303671 .
?templateMotifSequenceMatchRegionO3582076 faldo:begin ?templateMotifSequenceMatchBeginO3582077 .
?templateMotifSequenceMatchBeginO3582077 faldo:position ?templateMotifSequenceMatchBeginPositionO3582072 ;
faldo:reference isoform:O35820-1 .
?templateMotifSequenceProfileAlignmentOperationO3582078 edam:has_input signature:MF_03036 ;
rdf:type edam:operation_0300 .
?targetMotifMatch79 faldo:location ?targetMotifMatchRegionMatch80 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0303682 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO35820MF_0303673 .
?targetMotifMatchRegionMatch80 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0303681 .
?targetMotifMatchRegionMatchBeginMF_0303681 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0303674 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0303682 edam:has_input signature:MF_03036 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO35820MF_0303671, 1, (STRLEN(?templateMotifCigarO35820MF_0303671) - STRLEN(REPLACE(?templateMotifCigarO35820MF_0303671, CONCAT('^(?:-*[^-]){', STR(((117 - ?templateMotifSequenceMatchBeginPositionO3582072) + 1)), '}'), '')))), '[a-z]', '')) AS ?step183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO35820MF_0303673, 1, (STRLEN(?targetMotifMatchCigarO35820MF_0303673) - STRLEN(REPLACE(?targetMotifMatchCigarO35820MF_0303673, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO35820MF_0303673, 1, (STRLEN(?targetMotifMatchCigarO35820MF_0303673) - STRLEN(REPLACE(?targetMotifMatchCigarO35820MF_0303673, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), '')))), '[^-]', ''))) AS ?step284) .
BIND(((?step284 + ?targetMotifMatchRegionMatchBeginPositionMF_0303674) - 1) AS ?thisPositionOn29) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO35820MF_0303671, 1, (STRLEN(?templateMotifCigarO35820MF_0303671) - STRLEN(REPLACE(?templateMotifCigarO35820MF_0303671, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionO3582072) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO35820MF_0303673, 1, (STRLEN(?targetMotifMatchCigarO35820MF_0303673) - STRLEN(REPLACE(?targetMotifMatchCigarO35820MF_0303673, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO35820MF_0303673, 1, (STRLEN(?targetMotifMatchCigarO35820MF_0303673) - STRLEN(REPLACE(?targetMotifMatchCigarO35820MF_0303673, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0303674) - 1) AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse26) .
FILTER (REGEX('S[ASG][ML]', SUBSTR(?thisSequenceValue, ?thisPositionOn29, (?thisPositionOn30 - ?thisPositionOn29)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03036a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionO3582093 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO3582095 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO35820MF_0303688 .
?templateMotifSequenceMatchRegionO3582093 faldo:begin ?templateMotifSequenceMatchBeginO3582094 .
?templateMotifSequenceMatchBeginO3582094 faldo:position ?templateMotifSequenceMatchBeginPositionO3582089 ;
faldo:reference isoform:O35820-1 .
?templateMotifSequenceProfileAlignmentOperationO3582095 edam:has_input signature:MF_03036 ;
rdf:type edam:operation_0300 .
?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0303699 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO35820MF_0303690 .
?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0303698 .
?targetMotifMatchRegionMatchBeginMF_0303698 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0303691 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0303699 edam:has_input signature:MF_03036 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO35820MF_0303688, 1, (STRLEN(?templateMotifCigarO35820MF_0303688) - STRLEN(REPLACE(?templateMotifCigarO35820MF_0303688, CONCAT('^(?:-*[^-]){', STR(((28 - ?templateMotifSequenceMatchBeginPositionO3582089) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO35820MF_0303690, 1, (STRLEN(?targetMotifMatchCigarO35820MF_0303690) - STRLEN(REPLACE(?targetMotifMatchCigarO35820MF_0303690, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO35820MF_0303690, 1, (STRLEN(?targetMotifMatchCigarO35820MF_0303690) - STRLEN(REPLACE(?targetMotifMatchCigarO35820MF_0303690, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0303691) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_03036a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch107 faldo:location ?templateMotifSequenceMatchRegionO35820108 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO35820110 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO35820MF_03036103 .
?templateMotifSequenceMatchRegionO35820108 faldo:begin ?templateMotifSequenceMatchBeginO35820109 .
?templateMotifSequenceMatchBeginO35820109 faldo:position ?templateMotifSequenceMatchBeginPositionO35820104 ;
faldo:reference isoform:O35820-1 .
?templateMotifSequenceProfileAlignmentOperationO35820110 edam:has_input signature:MF_03036 ;
rdf:type edam:operation_0300 .
?targetMotifMatch111 faldo:location ?targetMotifMatchRegionMatch112 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03036114 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO35820MF_03036105 .
?targetMotifMatchRegionMatch112 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03036113 .
?targetMotifMatchRegionMatchBeginMF_03036113 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03036106 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03036114 edam:has_input signature:MF_03036 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO35820MF_03036103, 1, (STRLEN(?templateMotifCigarO35820MF_03036103) - STRLEN(REPLACE(?templateMotifCigarO35820MF_03036103, CONCAT('^(?:-*[^-]){', STR(((93 - ?templateMotifSequenceMatchBeginPositionO35820104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO35820MF_03036105, 1, (STRLEN(?targetMotifMatchCigarO35820MF_03036105) - STRLEN(REPLACE(?targetMotifMatchCigarO35820MF_03036105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO35820MF_03036105, 1, (STRLEN(?targetMotifMatchCigarO35820MF_03036105) - STRLEN(REPLACE(?targetMotifMatchCigarO35820MF_03036105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) .
BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_03036106) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03036a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch122 faldo:location ?templateMotifSequenceMatchRegionO35820123 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO35820125 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO35820MF_03036118 .
?templateMotifSequenceMatchRegionO35820123 faldo:begin ?templateMotifSequenceMatchBeginO35820124 .
?templateMotifSequenceMatchBeginO35820124 faldo:position ?templateMotifSequenceMatchBeginPositionO35820119 ;
faldo:reference isoform:O35820-1 .
?templateMotifSequenceProfileAlignmentOperationO35820125 edam:has_input signature:MF_03036 ;
rdf:type edam:operation_0300 .
?targetMotifMatch126 faldo:location ?targetMotifMatchRegionMatch127 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03036129 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO35820MF_03036120 .
?targetMotifMatchRegionMatch127 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03036128 .
?targetMotifMatchRegionMatchBeginMF_03036128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03036121 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03036129 edam:has_input signature:MF_03036 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO35820MF_03036118, 1, (STRLEN(?templateMotifCigarO35820MF_03036118) - STRLEN(REPLACE(?templateMotifCigarO35820MF_03036118, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionO35820119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO35820MF_03036120, 1, (STRLEN(?targetMotifMatchCigarO35820MF_03036120) - STRLEN(REPLACE(?targetMotifMatchCigarO35820MF_03036120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO35820MF_03036120, 1, (STRLEN(?targetMotifMatchCigarO35820MF_03036120) - STRLEN(REPLACE(?targetMotifMatchCigarO35820MF_03036120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) .
BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_03036121) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs2t132) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_03036a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(?this AS ?case6) .
BIND(URI(CONCAT(STR(?this), '#MF_03036a7')) AS ?name7) .
BIND(URI(CONCAT(STR(?this), '#MF_03036a8')) AS ?name8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:7742 .
})) .
BIND(?this AS ?case11) .
BIND(URI(CONCAT(STR(?this), '#MF_03036a12')) AS ?name12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
BIND(?this AS ?case13) .
BIND(URI(CONCAT(STR(?this), '#MF_03036a14')) AS ?name14) .
}
}
"xsd:string |
