| http://purl.uniprot.org/unirules/MF_03055#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:805526 up:source unirule:MF_03055 .
_:805527 up:source unirule:MF_03055 .
_:805528 up:source unirule:MF_03055 .
_:805529 up:source unirule:MF_03055 .
_:805530 up:source unirule:MF_03055 .
_:805531 up:source unirule:MF_03055 .
_:805532 up:source unirule:MF_03055 .
_:805533 up:source unirule:MF_03055 .
_:805534 up:source unirule:MF_03055 .
_:805535 up:source unirule:MF_03055 .
_:805536 up:source unirule:MF_03055 .
_:805537 up:source unirule:MF_03055 .
_:805538 up:source unirule:MF_03055 .
_:805539 up:source unirule:MF_03055 .
_:805540 up:source unirule:MF_03055 .
_:805541 up:source unirule:MF_03055 .
_:805542 up:source unirule:MF_03055 .
_:805543 up:source unirule:MF_03055 .
_:805544 up:source unirule:MF_03055 .
_:805545 up:source unirule:MF_03055 .
_:805546 up:source unirule:MF_03055 .
_:805547 up:source unirule:MF_03055 .
_:805548 up:source unirule:MF_03055 .
_:805549 up:source unirule:MF_03055 .
_:805550 up:source unirule:MF_03055 .
_:805551 up:source unirule:MF_03055 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0000049 ,
GO:0005634 ,
GO:0008176 ,
GO:0106004 ,
keyword:489 ,
keyword:539 ,
keyword:694 ,
keyword:808 ,
keyword:819 ,
keyword:820 ,
keyword:949 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.1.33' ;
up:fullName 'tRNA (guanine-N(7)-)-methyltransferase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'tRNA (guanine(46)-N(7))-methyltransferase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'tRNA(m7G46)-methyltransferase' ;
rdf:type up:Structured_Name .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'tRNA modification; N(7)-methylguanine-tRNA biosynthesis.' .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.' .
?case9 up:classifiedWith keyword:597 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by PKB and RPS6KA3' .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:59789 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:59789 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:59789 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
rdf:type up:Active_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:59789 .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
up:ligand ?ligand60 ;
rdf:type up:Binding_Site_Annotation .
?pfsb58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand60 rdfs:subClassOf chebi:59789 .
_:805552 a rdf:Statement ;
up:attribution _:805526 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:805553 a rdf:Statement ;
up:attribution _:805527 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:805554 a rdf:Statement ;
up:attribution _:805528 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:805555 a rdf:Statement ;
up:attribution _:805529 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:805556 a rdf:Statement ;
up:attribution _:805530 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:805557 a rdf:Statement ;
up:attribution _:805531 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:805558 a rdf:Statement ;
up:attribution _:805532 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:805559 a rdf:Statement ;
up:attribution _:805533 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:805560 a rdf:Statement ;
up:attribution _:805534 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:539 .
_:805561 a rdf:Statement ;
up:attribution _:805535 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:805562 a rdf:Statement ;
up:attribution _:805536 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:805563 a rdf:Statement ;
up:attribution _:805537 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:805564 a rdf:Statement ;
up:attribution _:805538 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:805565 a rdf:Statement ;
up:attribution _:805539 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:820 .
_:805566 a rdf:Statement ;
up:attribution _:805540 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000049 .
_:805567 a rdf:Statement ;
up:attribution _:805541 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008176 .
_:805568 a rdf:Statement ;
up:attribution _:805542 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005634 .
_:805569 a rdf:Statement ;
up:attribution _:805543 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0106004 .
_:805570 a rdf:Statement ;
up:attribution _:805544 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:805571 a rdf:Statement ;
up:source unirule:MF_03055 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:805572 a rdf:Statement ;
up:attribution _:805545 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:805573 a rdf:Statement ;
up:source unirule:MF_03055 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:805574 a rdf:Statement ;
up:attribution _:805546 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:805575 a rdf:Statement ;
up:source unirule:MF_03055 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:805576 a rdf:Statement ;
up:attribution _:805547 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:805577 a rdf:Statement ;
up:source unirule:MF_03055 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:805578 a rdf:Statement ;
up:attribution _:805548 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:805579 a rdf:Statement ;
up:source unirule:MF_03055 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:805580 a rdf:Statement ;
up:attribution _:805549 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:805581 a rdf:Statement ;
up:source unirule:MF_03055 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:805582 a rdf:Statement ;
up:attribution _:805550 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:805583 a rdf:Statement ;
up:source unirule:MF_03055 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:805584 a rdf:Statement ;
up:attribution _:805551 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03055
#Rule MF_03055 Created by:? on:2013-08-21 Modified by:ipedruzz on:2024-05-23
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03055 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03055a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03055a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_03055a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_03055a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03055a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_03055a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_03055a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch67 faldo:location ?templateMotifSequenceMatchRegionQ9UBP668 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UBP670 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UBP6MF_0305563 .
?templateMotifSequenceMatchRegionQ9UBP668 faldo:begin ?templateMotifSequenceMatchBeginQ9UBP669 .
?templateMotifSequenceMatchBeginQ9UBP669 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UBP664 ;
faldo:reference isoform:Q9UBP6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UBP670 edam:has_input signature:MF_03055 ;
rdf:type edam:operation_0300 .
?targetMotifMatch71 faldo:location ?targetMotifMatchRegionMatch72 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0305574 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UBP6MF_0305565 .
?targetMotifMatchRegionMatch72 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0305573 .
?targetMotifMatchRegionMatchBeginMF_0305573 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0305566 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0305574 edam:has_input signature:MF_03055 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagphospho) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UBP6MF_0305563, 1, (STRLEN(?templateMotifCigarQ9UBP6MF_0305563) - STRLEN(REPLACE(?templateMotifCigarQ9UBP6MF_0305563, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionQ9UBP664) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UBP6MF_0305565, 1, (STRLEN(?targetMotifMatchCigarQ9UBP6MF_0305565) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UBP6MF_0305565, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UBP6MF_0305565, 1, (STRLEN(?targetMotifMatchCigarQ9UBP6MF_0305565) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UBP6MF_0305565, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) .
BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0305566) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03055a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch82 faldo:location ?templateMotifSequenceMatchRegionQ9UBP683 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UBP685 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UBP6MF_0305578 .
?templateMotifSequenceMatchRegionQ9UBP683 faldo:begin ?templateMotifSequenceMatchBeginQ9UBP684 .
?templateMotifSequenceMatchBeginQ9UBP684 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UBP679 ;
faldo:reference isoform:Q9UBP6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UBP685 edam:has_input signature:MF_03055 ;
rdf:type edam:operation_0300 .
?targetMotifMatch86 faldo:location ?targetMotifMatchRegionMatch87 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0305589 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UBP6MF_0305580 .
?targetMotifMatchRegionMatch87 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0305588 .
?targetMotifMatchRegionMatchBeginMF_0305588 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0305581 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0305589 edam:has_input signature:MF_03055 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UBP6MF_0305578, 1, (STRLEN(?templateMotifCigarQ9UBP6MF_0305578) - STRLEN(REPLACE(?templateMotifCigarQ9UBP6MF_0305578, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionQ9UBP679) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UBP6MF_0305580, 1, (STRLEN(?targetMotifMatchCigarQ9UBP6MF_0305580) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UBP6MF_0305580, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UBP6MF_0305580, 1, (STRLEN(?targetMotifMatchCigarQ9UBP6MF_0305580) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UBP6MF_0305580, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) .
BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0305581) - 1) AS ?thisPositionOn27) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UBP6MF_0305578, 1, (STRLEN(?templateMotifCigarQ9UBP6MF_0305578) - STRLEN(REPLACE(?templateMotifCigarQ9UBP6MF_0305578, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionQ9UBP679) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UBP6MF_0305580, 1, (STRLEN(?targetMotifMatchCigarQ9UBP6MF_0305580) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UBP6MF_0305580, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UBP6MF_0305580, 1, (STRLEN(?targetMotifMatchCigarQ9UBP6MF_0305580) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UBP6MF_0305580, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) .
BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0305581) - 1) AS ?thisPositionOn28) .
BIND(?this AS ?pfs2t94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER (REGEX('E[IL]', SUBSTR(?thisSequenceValue, ?thisPositionOn27, (?thisPositionOn28 - ?thisPositionOn27)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03055a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch99 faldo:location ?templateMotifSequenceMatchRegionQ9UBP6100 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UBP6102 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UBP6MF_0305595 .
?templateMotifSequenceMatchRegionQ9UBP6100 faldo:begin ?templateMotifSequenceMatchBeginQ9UBP6101 .
?templateMotifSequenceMatchBeginQ9UBP6101 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UBP696 ;
faldo:reference isoform:Q9UBP6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UBP6102 edam:has_input signature:MF_03055 ;
rdf:type edam:operation_0300 .
?targetMotifMatch103 faldo:location ?targetMotifMatchRegionMatch104 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03055106 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UBP6MF_0305597 .
?targetMotifMatchRegionMatch104 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03055105 .
?targetMotifMatchRegionMatchBeginMF_03055105 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0305598 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03055106 edam:has_input signature:MF_03055 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UBP6MF_0305595, 1, (STRLEN(?templateMotifCigarQ9UBP6MF_0305595) - STRLEN(REPLACE(?templateMotifCigarQ9UBP6MF_0305595, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionQ9UBP696) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UBP6MF_0305597, 1, (STRLEN(?targetMotifMatchCigarQ9UBP6MF_0305597) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UBP6MF_0305597, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UBP6MF_0305597, 1, (STRLEN(?targetMotifMatchCigarQ9UBP6MF_0305597) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UBP6MF_0305597, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0305598) - 1) AS ?thisPositionOn34) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UBP6MF_0305595, 1, (STRLEN(?templateMotifCigarQ9UBP6MF_0305595) - STRLEN(REPLACE(?templateMotifCigarQ9UBP6MF_0305595, CONCAT('^(?:-*[^-]){', STR(((141 - ?templateMotifSequenceMatchBeginPositionQ9UBP696) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UBP6MF_0305597, 1, (STRLEN(?targetMotifMatchCigarQ9UBP6MF_0305597) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UBP6MF_0305597, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UBP6MF_0305597, 1, (STRLEN(?targetMotifMatchCigarQ9UBP6MF_0305597) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UBP6MF_0305597, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) .
BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_0305598) - 1) AS ?thisPositionOn35) .
BIND(?this AS ?pfs2t111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER (REGEX('N[ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn34, (?thisPositionOn35 - ?thisPositionOn34)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03055a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch116 faldo:location ?templateMotifSequenceMatchRegionQ9UBP6117 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UBP6119 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UBP6MF_03055112 .
?templateMotifSequenceMatchRegionQ9UBP6117 faldo:begin ?templateMotifSequenceMatchBeginQ9UBP6118 .
?templateMotifSequenceMatchBeginQ9UBP6118 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UBP6113 ;
faldo:reference isoform:Q9UBP6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UBP6119 edam:has_input signature:MF_03055 ;
rdf:type edam:operation_0300 .
?targetMotifMatch120 faldo:location ?targetMotifMatchRegionMatch121 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03055123 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UBP6MF_03055114 .
?targetMotifMatchRegionMatch121 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03055122 .
?targetMotifMatchRegionMatchBeginMF_03055122 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03055115 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03055123 edam:has_input signature:MF_03055 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UBP6MF_03055112, 1, (STRLEN(?templateMotifCigarQ9UBP6MF_03055112) - STRLEN(REPLACE(?templateMotifCigarQ9UBP6MF_03055112, CONCAT('^(?:-*[^-]){', STR(((238 - ?templateMotifSequenceMatchBeginPositionQ9UBP6113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UBP6MF_03055114, 1, (STRLEN(?targetMotifMatchCigarQ9UBP6MF_03055114) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UBP6MF_03055114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UBP6MF_03055114, 1, (STRLEN(?targetMotifMatchCigarQ9UBP6MF_03055114) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UBP6MF_03055114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) .
BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_03055115) - 1) AS ?thisPositionOn41) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UBP6MF_03055112, 1, (STRLEN(?templateMotifCigarQ9UBP6MF_03055112) - STRLEN(REPLACE(?templateMotifCigarQ9UBP6MF_03055112, CONCAT('^(?:-*[^-]){', STR(((240 - ?templateMotifSequenceMatchBeginPositionQ9UBP6113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UBP6MF_03055114, 1, (STRLEN(?targetMotifMatchCigarQ9UBP6MF_03055114) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UBP6MF_03055114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UBP6MF_03055114, 1, (STRLEN(?targetMotifMatchCigarQ9UBP6MF_03055114) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UBP6MF_03055114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) .
BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_03055115) - 1) AS ?thisPositionOn42) .
BIND(?this AS ?pfs2t128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER (REGEX('[ST][ED][ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn41, (?thisPositionOn42 - ?thisPositionOn41)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03055a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionQ9UBP6134 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UBP6136 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UBP6MF_03055129 .
?templateMotifSequenceMatchRegionQ9UBP6134 faldo:begin ?templateMotifSequenceMatchBeginQ9UBP6135 .
?templateMotifSequenceMatchBeginQ9UBP6135 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UBP6130 ;
faldo:reference isoform:Q9UBP6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UBP6136 edam:has_input signature:MF_03055 ;
rdf:type edam:operation_0300 .
?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03055140 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UBP6MF_03055131 .
?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03055139 .
?targetMotifMatchRegionMatchBeginMF_03055139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03055132 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03055140 edam:has_input signature:MF_03055 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UBP6MF_03055129, 1, (STRLEN(?templateMotifCigarQ9UBP6MF_03055129) - STRLEN(REPLACE(?templateMotifCigarQ9UBP6MF_03055129, CONCAT('^(?:-*[^-]){', STR(((163 - ?templateMotifSequenceMatchBeginPositionQ9UBP6130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UBP6MF_03055131, 1, (STRLEN(?targetMotifMatchCigarQ9UBP6MF_03055131) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UBP6MF_03055131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UBP6MF_03055131, 1, (STRLEN(?targetMotifMatchCigarQ9UBP6MF_03055131) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UBP6MF_03055131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_03055132) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs2t143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03055a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionQ9UBP6149 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UBP6151 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UBP6MF_03055144 .
?templateMotifSequenceMatchRegionQ9UBP6149 faldo:begin ?templateMotifSequenceMatchBeginQ9UBP6150 .
?templateMotifSequenceMatchBeginQ9UBP6150 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UBP6145 ;
faldo:reference isoform:Q9UBP6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UBP6151 edam:has_input signature:MF_03055 ;
rdf:type edam:operation_0300 .
?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03055155 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UBP6MF_03055146 .
?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03055154 .
?targetMotifMatchRegionMatchBeginMF_03055154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03055147 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03055155 edam:has_input signature:MF_03055 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UBP6MF_03055144, 1, (STRLEN(?templateMotifCigarQ9UBP6MF_03055144) - STRLEN(REPLACE(?templateMotifCigarQ9UBP6MF_03055144, CONCAT('^(?:-*[^-]){', STR(((84 - ?templateMotifSequenceMatchBeginPositionQ9UBP6145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UBP6MF_03055146, 1, (STRLEN(?targetMotifMatchCigarQ9UBP6MF_03055146) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UBP6MF_03055146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UBP6MF_03055146, 1, (STRLEN(?targetMotifMatchCigarQ9UBP6MF_03055146) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UBP6MF_03055146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) .
BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_03055147) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs2t158) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_03055a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch163 faldo:location ?templateMotifSequenceMatchRegionQ9UBP6164 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UBP6166 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UBP6MF_03055159 .
?templateMotifSequenceMatchRegionQ9UBP6164 faldo:begin ?templateMotifSequenceMatchBeginQ9UBP6165 .
?templateMotifSequenceMatchBeginQ9UBP6165 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UBP6160 ;
faldo:reference isoform:Q9UBP6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UBP6166 edam:has_input signature:MF_03055 ;
rdf:type edam:operation_0300 .
?targetMotifMatch167 faldo:location ?targetMotifMatchRegionMatch168 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03055170 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UBP6MF_03055161 .
?targetMotifMatchRegionMatch168 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03055169 .
?targetMotifMatchRegionMatchBeginMF_03055169 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03055162 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03055170 edam:has_input signature:MF_03055 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UBP6MF_03055159, 1, (STRLEN(?templateMotifCigarQ9UBP6MF_03055159) - STRLEN(REPLACE(?templateMotifCigarQ9UBP6MF_03055159, CONCAT('^(?:-*[^-]){', STR(((160 - ?templateMotifSequenceMatchBeginPositionQ9UBP6160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UBP6MF_03055161, 1, (STRLEN(?targetMotifMatchCigarQ9UBP6MF_03055161) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UBP6MF_03055161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UBP6MF_03055161, 1, (STRLEN(?targetMotifMatchCigarQ9UBP6MF_03055161) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UBP6MF_03055161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) .
BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_03055162) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs2t173) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) .
FILTER (REGEX('[LC]', SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03055a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag174) .
}
BIND(IF(BOUND(?tagphospho), ?caseWithTag174, ?UNBOUND_VARIABLE) AS ?case9) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4930 .
BIND(?this AS ?case12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:6237 .
BIND(?this AS ?case13) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:4930 .
})) .
BIND(?this AS ?case14) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon175 {taxon:7742 taxon:5782}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon175 .
BIND(?this AS ?case15) .
}
}
"xsd:string |
