| http://purl.uniprot.org/unirules/MF_03108#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:817944 up:source unirule:MF_03108 .
_:817945 up:source unirule:MF_03108 .
_:817946 up:source unirule:MF_03108 .
_:817947 up:source unirule:MF_03108 .
_:817948 up:source unirule:MF_03108 .
_:817949 up:source unirule:MF_03108 .
_:817950 up:source unirule:MF_03108 .
_:817951 up:source unirule:MF_03108 .
_:817952 up:source unirule:MF_03108 .
_:817953 up:source unirule:MF_03108 .
_:817954 up:source unirule:MF_03108 .
_:817955 up:source unirule:MF_03108 .
_:817956 up:source unirule:MF_03108 .
_:817957 up:source unirule:MF_03108 .
_:817958 up:source unirule:MF_03108 .
_:817959 up:source unirule:MF_03108 .
_:817960 up:source unirule:MF_03108 .
_:817961 up:source unirule:MF_03108 .
_:817962 up:source unirule:MF_03108 .
_:817963 up:source unirule:MF_03108 .
_:817964 up:source unirule:MF_03108 .
_:817965 up:source unirule:MF_03108 .
_:817966 up:source unirule:MF_03108 .
_:817967 up:source unirule:MF_03108 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0004096 ,
GO:0004601 ,
keyword:349 ,
keyword:376 ,
keyword:408 ,
keyword:479 ,
keyword:560 ,
keyword:575 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.11.1.21' ;
up:fullName 'Catalase-peroxidase' ;
up:shortName 'CP' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Peroxidase/catalase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'katG' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:60344 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 heme b (iron(II)-protoporphyrin IX) group per monomer.' .
?annotation8 a up:PTM_Annotation ;
rdfs:comment 'Formation of the three residue Trp-Tyr-Met cross-link is important for the catalase, but not the peroxidase activity of the enzyme.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the peroxidase family. Peroxidase/catalase subfamily.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 up:ligandPart ?ligand20 ;
rdfs:subClassOf chebi:18248 ,
chebi:30413 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
rdf:type up:Cross-link_Annotation ;
rdfs:comment 'Tryptophyl-tyrosyl-methioninium (Trp-Tyr) (with @RESIDUE_NAME_AT_POS|Met|299|@)' .
?pfsb31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
rdf:type up:Cross-link_Annotation ;
rdfs:comment 'Tryptophyl-tyrosyl-methioninium (Tyr-Met) (with @RESIDUE_NAME_AT_POS|Trp|140|@)' .
?pfsb37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?sam41 up:classifiedWith keyword:1015 ,
keyword:732 ,
keyword:964 .
?signal42 faldo:begin ?signalb43 ;
faldo:end ?signale44 .
?signalb43 faldo:position ?signalbp45 .
?signale44 faldo:position ?signalep46 .
?keyword47 up:range ?signal42 .
?keyword48 up:range ?signal42 .
?keyword49 up:range ?signal42 .
_:817968 a rdf:Statement ;
up:attribution _:817944 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:817969 a rdf:Statement ;
up:attribution _:817945 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:817970 a rdf:Statement ;
up:attribution _:817946 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:817971 a rdf:Statement ;
up:attribution _:817947 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:817972 a rdf:Statement ;
up:attribution _:817948 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:817973 a rdf:Statement ;
up:attribution _:817949 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:817974 a rdf:Statement ;
up:attribution _:817950 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:817975 a rdf:Statement ;
up:attribution _:817951 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:817976 a rdf:Statement ;
up:attribution _:817952 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:349 .
_:817977 a rdf:Statement ;
up:attribution _:817953 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:376 .
_:817978 a rdf:Statement ;
up:attribution _:817954 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:817979 a rdf:Statement ;
up:attribution _:817955 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:817980 a rdf:Statement ;
up:attribution _:817956 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:817981 a rdf:Statement ;
up:attribution _:817957 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:575 .
_:817982 a rdf:Statement ;
up:attribution _:817958 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004096 .
_:817983 a rdf:Statement ;
up:attribution _:817959 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004601 .
_:817984 a rdf:Statement ;
up:source unirule:MF_03108 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:817985 a rdf:Statement ;
up:attribution _:817960 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:817986 a rdf:Statement ;
up:source unirule:MF_03108 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:817987 a rdf:Statement ;
up:attribution _:817961 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:817988 a rdf:Statement ;
up:source unirule:MF_03108 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:817989 a rdf:Statement ;
up:attribution _:817962 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:817990 a rdf:Statement ;
up:source unirule:MF_03108 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:817991 a rdf:Statement ;
up:attribution _:817963 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:817992 a rdf:Statement ;
up:source unirule:MF_03108 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:817993 a rdf:Statement ;
up:attribution _:817964 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:817994 a rdf:Statement ;
up:attribution _:817965 ;
rdf:subject ?sam41 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:817995 a rdf:Statement ;
up:attribution _:817966 ;
rdf:subject ?sam41 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:964 .
_:817996 a rdf:Statement ;
up:attribution _:817967 ;
rdf:subject ?sam41 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03108
#Rule MF_03108 Created by:? on:2012-10-05 Modified by:Catherine Rivoire on:2024-10-31
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01961 .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(URI(CONCAT(STR(?this), '#MF_03108a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03108a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_03108a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03108a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_03108a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_03108a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_03108a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch54 faldo:location ?templateMotifSequenceMatchRegionA4QUT255 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA4QUT257 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA4QUT2MF_0196150 .
?templateMotifSequenceMatchRegionA4QUT255 faldo:begin ?templateMotifSequenceMatchBeginA4QUT256 .
?templateMotifSequenceMatchBeginA4QUT256 faldo:position ?templateMotifSequenceMatchBeginPositionA4QUT251 ;
faldo:reference isoform:A4QUT2-1 .
?templateMotifSequenceProfileAlignmentOperationA4QUT257 edam:has_input signature:MF_01961 ;
rdf:type edam:operation_0300 .
?targetMotifMatch58 faldo:location ?targetMotifMatchRegionMatch59 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0196161 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA4QUT2MF_0196152 .
?targetMotifMatchRegionMatch59 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0196160 .
?targetMotifMatchRegionMatchBeginMF_0196160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0196153 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0196161 edam:has_input signature:MF_01961 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA4QUT2MF_0196150, 1, (STRLEN(?templateMotifCigarA4QUT2MF_0196150) - STRLEN(REPLACE(?templateMotifCigarA4QUT2MF_0196150, CONCAT('^(?:-*[^-]){', STR(((141 - ?templateMotifSequenceMatchBeginPositionA4QUT251) + 1)), '}'), '')))), '[a-z]', '')) AS ?step162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA4QUT2MF_0196152, 1, (STRLEN(?targetMotifMatchCigarA4QUT2MF_0196152) - STRLEN(REPLACE(?targetMotifMatchCigarA4QUT2MF_0196152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA4QUT2MF_0196152, 1, (STRLEN(?targetMotifMatchCigarA4QUT2MF_0196152) - STRLEN(REPLACE(?targetMotifMatchCigarA4QUT2MF_0196152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), '')))), '[^-]', ''))) AS ?step263) .
BIND(((?step263 + ?targetMotifMatchRegionMatchBeginPositionMF_0196153) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03108a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch69 faldo:location ?templateMotifSequenceMatchRegionA4QUT270 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA4QUT272 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA4QUT2MF_0196165 .
?templateMotifSequenceMatchRegionA4QUT270 faldo:begin ?templateMotifSequenceMatchBeginA4QUT271 .
?templateMotifSequenceMatchBeginA4QUT271 faldo:position ?templateMotifSequenceMatchBeginPositionA4QUT266 ;
faldo:reference isoform:A4QUT2-1 .
?templateMotifSequenceProfileAlignmentOperationA4QUT272 edam:has_input signature:MF_01961 ;
rdf:type edam:operation_0300 .
?targetMotifMatch73 faldo:location ?targetMotifMatchRegionMatch74 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0196176 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA4QUT2MF_0196167 .
?targetMotifMatchRegionMatch74 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0196175 .
?targetMotifMatchRegionMatchBeginMF_0196175 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0196168 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0196176 edam:has_input signature:MF_01961 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA4QUT2MF_0196165, 1, (STRLEN(?templateMotifCigarA4QUT2MF_0196165) - STRLEN(REPLACE(?templateMotifCigarA4QUT2MF_0196165, CONCAT('^(?:-*[^-]){', STR(((314 - ?templateMotifSequenceMatchBeginPositionA4QUT266) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA4QUT2MF_0196167, 1, (STRLEN(?targetMotifMatchCigarA4QUT2MF_0196167) - STRLEN(REPLACE(?targetMotifMatchCigarA4QUT2MF_0196167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA4QUT2MF_0196167, 1, (STRLEN(?targetMotifMatchCigarA4QUT2MF_0196167) - STRLEN(REPLACE(?targetMotifMatchCigarA4QUT2MF_0196167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) .
BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0196168) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03108a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch84 faldo:location ?templateMotifSequenceMatchRegionA4QUT285 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA4QUT287 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA4QUT2MF_0196180 .
?templateMotifSequenceMatchRegionA4QUT285 faldo:begin ?templateMotifSequenceMatchBeginA4QUT286 .
?templateMotifSequenceMatchBeginA4QUT286 faldo:position ?templateMotifSequenceMatchBeginPositionA4QUT281 ;
faldo:reference isoform:A4QUT2-1 .
?templateMotifSequenceProfileAlignmentOperationA4QUT287 edam:has_input signature:MF_01961 ;
rdf:type edam:operation_0300 .
?targetMotifMatch88 faldo:location ?targetMotifMatchRegionMatch89 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0196191 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA4QUT2MF_0196182 .
?targetMotifMatchRegionMatch89 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0196190 .
?targetMotifMatchRegionMatchBeginMF_0196190 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0196183 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0196191 edam:has_input signature:MF_01961 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA4QUT2MF_0196180, 1, (STRLEN(?templateMotifCigarA4QUT2MF_0196180) - STRLEN(REPLACE(?templateMotifCigarA4QUT2MF_0196180, CONCAT('^(?:-*[^-]){', STR(((137 - ?templateMotifSequenceMatchBeginPositionA4QUT281) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA4QUT2MF_0196182, 1, (STRLEN(?targetMotifMatchCigarA4QUT2MF_0196182) - STRLEN(REPLACE(?targetMotifMatchCigarA4QUT2MF_0196182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA4QUT2MF_0196182, 1, (STRLEN(?targetMotifMatchCigarA4QUT2MF_0196182) - STRLEN(REPLACE(?targetMotifMatchCigarA4QUT2MF_0196182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) .
BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0196183) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03108a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch99 faldo:location ?templateMotifSequenceMatchRegionA4QUT2100 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA4QUT2102 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA4QUT2MF_0196195 .
?templateMotifSequenceMatchRegionA4QUT2100 faldo:begin ?templateMotifSequenceMatchBeginA4QUT2101 .
?templateMotifSequenceMatchBeginA4QUT2101 faldo:position ?templateMotifSequenceMatchBeginPositionA4QUT296 ;
faldo:reference isoform:A4QUT2-1 .
?templateMotifSequenceProfileAlignmentOperationA4QUT2102 edam:has_input signature:MF_01961 ;
rdf:type edam:operation_0300 .
?targetMotifMatch103 faldo:location ?targetMotifMatchRegionMatch104 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01961106 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA4QUT2MF_0196197 .
?targetMotifMatchRegionMatch104 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01961105 .
?targetMotifMatchRegionMatchBeginMF_01961105 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0196198 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01961106 edam:has_input signature:MF_01961 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA4QUT2MF_0196195, 1, (STRLEN(?templateMotifCigarA4QUT2MF_0196195) - STRLEN(REPLACE(?templateMotifCigarA4QUT2MF_0196195, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionA4QUT296) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA4QUT2MF_0196197, 1, (STRLEN(?targetMotifMatchCigarA4QUT2MF_0196197) - STRLEN(REPLACE(?targetMotifMatchCigarA4QUT2MF_0196197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA4QUT2MF_0196197, 1, (STRLEN(?targetMotifMatchCigarA4QUT2MF_0196197) - STRLEN(REPLACE(?targetMotifMatchCigarA4QUT2MF_0196197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0196198) - 1) AS ?thisPositionOn33) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA4QUT2MF_0196195, 1, (STRLEN(?templateMotifCigarA4QUT2MF_0196195) - STRLEN(REPLACE(?templateMotifCigarA4QUT2MF_0196195, CONCAT('^(?:-*[^-]){', STR(((273 - ?templateMotifSequenceMatchBeginPositionA4QUT296) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA4QUT2MF_0196197, 1, (STRLEN(?targetMotifMatchCigarA4QUT2MF_0196197) - STRLEN(REPLACE(?targetMotifMatchCigarA4QUT2MF_0196197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA4QUT2MF_0196197, 1, (STRLEN(?targetMotifMatchCigarA4QUT2MF_0196197) - STRLEN(REPLACE(?targetMotifMatchCigarA4QUT2MF_0196197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) .
BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_0196198) - 1) AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) .
FILTER (REGEX('W[ARNDCQEGHILKMFPSTWYVBZJUOX]*Y', SUBSTR(?thisSequenceValue, ?thisPositionOn33, (?thisPositionOn34 - ?thisPositionOn33)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03108a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch116 faldo:location ?templateMotifSequenceMatchRegionA4QUT2117 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA4QUT2119 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA4QUT2MF_01961112 .
?templateMotifSequenceMatchRegionA4QUT2117 faldo:begin ?templateMotifSequenceMatchBeginA4QUT2118 .
?templateMotifSequenceMatchBeginA4QUT2118 faldo:position ?templateMotifSequenceMatchBeginPositionA4QUT2113 ;
faldo:reference isoform:A4QUT2-1 .
?templateMotifSequenceProfileAlignmentOperationA4QUT2119 edam:has_input signature:MF_01961 ;
rdf:type edam:operation_0300 .
?targetMotifMatch120 faldo:location ?targetMotifMatchRegionMatch121 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01961123 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA4QUT2MF_01961114 .
?targetMotifMatchRegionMatch121 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01961122 .
?targetMotifMatchRegionMatchBeginMF_01961122 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01961115 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01961123 edam:has_input signature:MF_01961 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA4QUT2MF_01961112, 1, (STRLEN(?templateMotifCigarA4QUT2MF_01961112) - STRLEN(REPLACE(?templateMotifCigarA4QUT2MF_01961112, CONCAT('^(?:-*[^-]){', STR(((273 - ?templateMotifSequenceMatchBeginPositionA4QUT2113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA4QUT2MF_01961114, 1, (STRLEN(?targetMotifMatchCigarA4QUT2MF_01961114) - STRLEN(REPLACE(?targetMotifMatchCigarA4QUT2MF_01961114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA4QUT2MF_01961114, 1, (STRLEN(?targetMotifMatchCigarA4QUT2MF_01961114) - STRLEN(REPLACE(?targetMotifMatchCigarA4QUT2MF_01961114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) .
BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_01961115) - 1) AS ?thisPositionOn39) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA4QUT2MF_01961112, 1, (STRLEN(?templateMotifCigarA4QUT2MF_01961112) - STRLEN(REPLACE(?templateMotifCigarA4QUT2MF_01961112, CONCAT('^(?:-*[^-]){', STR(((299 - ?templateMotifSequenceMatchBeginPositionA4QUT2113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA4QUT2MF_01961114, 1, (STRLEN(?targetMotifMatchCigarA4QUT2MF_01961114) - STRLEN(REPLACE(?targetMotifMatchCigarA4QUT2MF_01961114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA4QUT2MF_01961114, 1, (STRLEN(?targetMotifMatchCigarA4QUT2MF_01961114) - STRLEN(REPLACE(?targetMotifMatchCigarA4QUT2MF_01961114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) .
BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_01961115) - 1) AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse38) .
FILTER (REGEX('Y[ARNDCQEGHILKMFPSTWYVBZJUOX]*M', SUBSTR(?thisSequenceValue, ?thisPositionOn39, (?thisPositionOn40 - ?thisPositionOn39)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03108a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:annotation ?samsignal129 ;
up:sequence ?thisSequence .
?samsignal129 up:range ?samsignalr130 ;
rdf:type up:Signal_Peptide_Annotation .
?samsignalr130 faldo:begin ?samsignalb131 ;
faldo:end ?samsignale132 .
?samsignalb131 faldo:position ?samsignalbp133 ;
faldo:reference ?thisSequence .
?samsignale132 faldo:position ?samsignalep134 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam41) .
}
BIND(URI(CONCAT(STR(?this), '#MF_03108a47')) AS ?keyword47) .
BIND(URI(CONCAT(STR(?this), '#MF_03108a48')) AS ?keyword48) .
BIND(URI(CONCAT(STR(?this), '#MF_03108a49')) AS ?keyword49) .
}
"xsd:string |
