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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_03109#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03109#construct-template-107 |
| http://purl.uniprot.org/unirules/MF_03109#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03109#construct-template-16 |
| http://purl.uniprot.org/unirules/MF_03109#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03109#construct-template-108 |
| http://purl.uniprot.org/unirules/MF_03109#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03109#construct-template-109 |
| http://purl.uniprot.org/unirules/MF_03109#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03109#construct-template-19 |
| http://purl.uniprot.org/unirules/MF_03109#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_03109#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_03109#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_03109#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_03109#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_03109#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:818486 up:source unirule:MF_03109 . _:818487 up:source unirule:MF_03109 . _:818488 up:source unirule:MF_03109 . _:818489 up:source unirule:MF_03109 . _:818490 up:source unirule:MF_03109 . _:818491 up:source unirule:MF_03109 . _:818492 up:source unirule:MF_03109 . _:818493 up:source unirule:MF_03109 . _:818494 up:source unirule:MF_03109 . _:818495 up:source unirule:MF_03109 . _:818496 up:source unirule:MF_03109 . _:818497 up:source unirule:MF_03109 . _:818498 up:source unirule:MF_03109 . _:818499 up:source unirule:MF_03109 . _:818500 up:source unirule:MF_03109 . _:818501 up:source unirule:MF_03109 . _:818502 up:source unirule:MF_03109 . _:818503 up:source unirule:MF_03109 . _:818504 up:source unirule:MF_03109 . _:818505 up:source unirule:MF_03109 . _:818506 up:source unirule:MF_03109 . _:818507 up:source unirule:MF_03109 . _:818508 up:source unirule:MF_03109 . _:818509 up:source unirule:MF_03109 . _:818510 up:source unirule:MF_03109 . ?this up:annotation ?annotation0 ; up:classifiedWith GO:0003924 , GO:0005525 , GO:0005789 , keyword:1133 , keyword:256 , keyword:342 , keyword:378 , keyword:472 , keyword:547 , keyword:812 . ?annotation0 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the TRAFAC class dynamin-like GTPase superfamily. GB1/RHD3 GTPase family. RHD3 subfamily.' . ?case1 up:classifiedWith GO:0007029 . ?case3 up:alternativeName ?name5 ; up:recommendedName ?name4 . ?name4 up:ecName '3.6.5.-' ; up:fullName 'Protein ROOT HAIR DEFECTIVE 3 homolog' ; rdf:type up:Structured_Name . ?name5 up:fullName 'Protein SEY1 homolog' ; rdf:type up:Structured_Name . ?case6 up:alternativeName ?name8 ; up:recommendedName ?name7 . ?name7 up:ecName '3.6.5.-' ; up:fullName 'Protein SEY1' ; rdf:type up:Structured_Name . ?name8 up:fullName 'Synthetic enhancer of YOP1 protein' ; rdf:type up:Structured_Name . ?case9 up:recommendedName ?name10 . ?name10 up:ecName '3.6.5.-' ; up:fullName ?nameValue11 ; rdf:type up:Structured_Name . ?case12 up:recommendedName ?name13 . ?name13 up:ecName '3.6.5.-' ; up:fullName 'Protein SEY1 homolog' ; rdf:type up:Structured_Name . ?pfs14 up:annotation ?annotation15 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; rdf:type up:Topological_Domain_Annotation ; rdfs:comment 'Cytoplasmic' . ?pfsb16 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfs20 up:annotation ?annotation21 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb22 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfs26 up:annotation ?annotation27 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; rdf:type up:Topological_Domain_Annotation ; rdfs:comment 'Lumenal' . ?pfsb28 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfs32 up:annotation ?annotation33 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb34 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfs38 up:annotation ?annotation39 . ?annotation39 faldo:begin ?pfsb40 ; faldo:end ?pfse41 ; rdf:type up:Topological_Domain_Annotation ; rdfs:comment 'Cytoplasmic' . ?pfsb40 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse41 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; up:ligand ?ligand48 ; rdf:type up:Binding_Site_Annotation . ?pfsb46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?ligand48 rdfs:subClassOf chebi:37565 . ?sam51 up:classifiedWith keyword:175 . ?coiledCoil52 faldo:begin ?coiledCoilb53 ; faldo:end ?coiledCoile54 . ?coiledCoilb53 faldo:position ?coiledCoilbp55 . ?coiledCoile54 faldo:position ?coiledCoilep56 . ?keyword57 up:range ?coiledCoil52 . _:818511 a rdf:Statement ; up:attribution _:818486 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:818512 a rdf:Statement ; up:attribution _:818487 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:256 . _:818513 a rdf:Statement ; up:attribution _:818488 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:342 . _:818514 a rdf:Statement ; up:attribution _:818489 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:818515 a rdf:Statement ; up:attribution _:818490 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:818516 a rdf:Statement ; up:attribution _:818491 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:818517 a rdf:Statement ; up:attribution _:818492 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:812 . _:818518 a rdf:Statement ; up:attribution _:818493 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1133 . _:818519 a rdf:Statement ; up:attribution _:818494 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005789 . _:818520 a rdf:Statement ; up:attribution _:818495 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003924 . _:818521 a rdf:Statement ; up:attribution _:818496 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005525 . _:818522 a rdf:Statement ; up:attribution _:818497 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object GO:0007029 . _:818523 a rdf:Statement ; up:attribution _:818498 ; rdf:subject ?case3 ; rdf:predicate up:recommendedName ; rdf:object ?name4 . _:818524 a rdf:Statement ; up:attribution _:818499 ; rdf:subject ?case3 ; rdf:predicate up:alternativeName ; rdf:object ?name5 . _:818525 a rdf:Statement ; up:attribution _:818500 ; rdf:subject ?case6 ; rdf:predicate up:recommendedName ; rdf:object ?name7 . _:818526 a rdf:Statement ; up:attribution _:818501 ; rdf:subject ?case6 ; rdf:predicate up:alternativeName ; rdf:object ?name8 . _:818527 a rdf:Statement ; up:attribution _:818502 ; rdf:subject ?case9 ; rdf:predicate up:recommendedName ; rdf:object ?name10 . _:818528 a rdf:Statement ; up:attribution _:818503 ; rdf:subject ?case12 ; rdf:predicate up:recommendedName ; rdf:object ?name13 . _:818529 a rdf:Statement ; up:source unirule:MF_03109 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:818530 a rdf:Statement ; up:attribution _:818504 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:818531 a rdf:Statement ; up:source unirule:MF_03109 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:818532 a rdf:Statement ; up:attribution _:818505 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:818533 a rdf:Statement ; up:source unirule:MF_03109 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:818534 a rdf:Statement ; up:attribution _:818506 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:818535 a rdf:Statement ; up:source unirule:MF_03109 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:818536 a rdf:Statement ; up:attribution _:818507 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:818537 a rdf:Statement ; up:source unirule:MF_03109 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:818538 a rdf:Statement ; up:attribution _:818508 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:818539 a rdf:Statement ; up:source unirule:MF_03109 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:818540 a rdf:Statement ; up:attribution _:818509 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:818541 a rdf:Statement ; up:attribution _:818510 ; rdf:subject ?sam51 ; rdf:predicate up:classifiedWith ; rdf:object keyword:175 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_03109 #Rule MF_03109 Created by:? on:2012-10-22 Modified by:Edouard de Castro on:2022-11-19 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_03109 . ?thisOrganism rdfs:subClassOf+ taxon:2759 . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:33208 . })) . BIND(URI(CONCAT(STR(?this), '#MF_03109a0')) AS ?annotation0) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch62 faldo:location ?templateMotifSequenceMatchRegionQ9928763 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9928765 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ99287MF_0310958 . ?templateMotifSequenceMatchRegionQ9928763 faldo:begin ?templateMotifSequenceMatchBeginQ9928764 . ?templateMotifSequenceMatchBeginQ9928764 faldo:position ?templateMotifSequenceMatchBeginPositionQ9928759 ; faldo:reference isoform:Q99287-1 . ?templateMotifSequenceProfileAlignmentOperationQ9928765 edam:has_input signature:MF_03109 ; rdf:type edam:operation_0300 . ?targetMotifMatch66 faldo:location ?targetMotifMatchRegionMatch67 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0310969 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ99287MF_0310960 . ?targetMotifMatchRegionMatch67 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0310968 . ?targetMotifMatchRegionMatchBeginMF_0310968 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0310961 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0310969 edam:has_input signature:MF_03109 ; rdf:type edam:operation_0300 . BIND(1 AS ?thisPositionOn18) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ99287MF_0310958, 1, (STRLEN(?templateMotifCigarQ99287MF_0310958) - STRLEN(REPLACE(?templateMotifCigarQ99287MF_0310958, CONCAT('^(?:-*[^-]){', STR(((681 - ?templateMotifSequenceMatchBeginPositionQ9928759) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ99287MF_0310960, 1, (STRLEN(?targetMotifMatchCigarQ99287MF_0310960) - STRLEN(REPLACE(?targetMotifMatchCigarQ99287MF_0310960, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ99287MF_0310960, 1, (STRLEN(?targetMotifMatchCigarQ99287MF_0310960) - STRLEN(REPLACE(?targetMotifMatchCigarQ99287MF_0310960, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) . BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0310961) - 1) AS ?thisPositionOn19) . BIND(?this AS ?pfs1t72) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) . FILTER ((BOUND(?thisPositionOn18) && BOUND(?thisPositionOn19))) . BIND(URI(CONCAT(STR(?this), '#MF_03109a15')) AS ?annotation15) . BIND(?this AS ?pfs14) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch77 faldo:location ?templateMotifSequenceMatchRegionQ9928778 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9928780 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ99287MF_0310973 . ?templateMotifSequenceMatchRegionQ9928778 faldo:begin ?templateMotifSequenceMatchBeginQ9928779 . ?templateMotifSequenceMatchBeginQ9928779 faldo:position ?templateMotifSequenceMatchBeginPositionQ9928774 ; faldo:reference isoform:Q99287-1 . ?templateMotifSequenceProfileAlignmentOperationQ9928780 edam:has_input signature:MF_03109 ; rdf:type edam:operation_0300 . ?targetMotifMatch81 faldo:location ?targetMotifMatchRegionMatch82 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0310984 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ99287MF_0310975 . ?targetMotifMatchRegionMatch82 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0310983 . ?targetMotifMatchRegionMatchBeginMF_0310983 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0310976 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0310984 edam:has_input signature:MF_03109 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ99287MF_0310973, 1, (STRLEN(?templateMotifCigarQ99287MF_0310973) - STRLEN(REPLACE(?templateMotifCigarQ99287MF_0310973, CONCAT('^(?:-*[^-]){', STR(((682 - ?templateMotifSequenceMatchBeginPositionQ9928774) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ99287MF_0310975, 1, (STRLEN(?targetMotifMatchCigarQ99287MF_0310975) - STRLEN(REPLACE(?targetMotifMatchCigarQ99287MF_0310975, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ99287MF_0310975, 1, (STRLEN(?targetMotifMatchCigarQ99287MF_0310975) - STRLEN(REPLACE(?targetMotifMatchCigarQ99287MF_0310975, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) . BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0310976) - 1) AS ?thisPositionOn24) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ99287MF_0310973, 1, (STRLEN(?templateMotifCigarQ99287MF_0310973) - STRLEN(REPLACE(?templateMotifCigarQ99287MF_0310973, CONCAT('^(?:-*[^-]){', STR(((702 - ?templateMotifSequenceMatchBeginPositionQ9928774) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ99287MF_0310975, 1, (STRLEN(?targetMotifMatchCigarQ99287MF_0310975) - STRLEN(REPLACE(?targetMotifMatchCigarQ99287MF_0310975, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ99287MF_0310975, 1, (STRLEN(?targetMotifMatchCigarQ99287MF_0310975) - STRLEN(REPLACE(?targetMotifMatchCigarQ99287MF_0310975, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) . BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0310976) - 1) AS ?thisPositionOn25) . BIND(?this AS ?pfs1t89) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) . FILTER ((BOUND(?thisPositionOn24) && BOUND(?thisPositionOn25))) . BIND(URI(CONCAT(STR(?this), '#MF_03109a21')) AS ?annotation21) . BIND(?this AS ?pfs20) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch94 faldo:location ?templateMotifSequenceMatchRegionQ9928795 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9928797 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ99287MF_0310990 . ?templateMotifSequenceMatchRegionQ9928795 faldo:begin ?templateMotifSequenceMatchBeginQ9928796 . ?templateMotifSequenceMatchBeginQ9928796 faldo:position ?templateMotifSequenceMatchBeginPositionQ9928791 ; faldo:reference isoform:Q99287-1 . ?templateMotifSequenceProfileAlignmentOperationQ9928797 edam:has_input signature:MF_03109 ; rdf:type edam:operation_0300 . ?targetMotifMatch98 faldo:location ?targetMotifMatchRegionMatch99 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03109101 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ99287MF_0310992 . ?targetMotifMatchRegionMatch99 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03109100 . ?targetMotifMatchRegionMatchBeginMF_03109100 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0310993 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03109101 edam:has_input signature:MF_03109 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ99287MF_0310990, 1, (STRLEN(?templateMotifCigarQ99287MF_0310990) - STRLEN(REPLACE(?templateMotifCigarQ99287MF_0310990, CONCAT('^(?:-*[^-]){', STR(((703 - ?templateMotifSequenceMatchBeginPositionQ9928791) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ99287MF_0310992, 1, (STRLEN(?targetMotifMatchCigarQ99287MF_0310992) - STRLEN(REPLACE(?targetMotifMatchCigarQ99287MF_0310992, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ99287MF_0310992, 1, (STRLEN(?targetMotifMatchCigarQ99287MF_0310992) - STRLEN(REPLACE(?targetMotifMatchCigarQ99287MF_0310992, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) . BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0310993) - 1) AS ?thisPositionOn30) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ99287MF_0310990, 1, (STRLEN(?templateMotifCigarQ99287MF_0310990) - STRLEN(REPLACE(?templateMotifCigarQ99287MF_0310990, CONCAT('^(?:-*[^-]){', STR(((705 - ?templateMotifSequenceMatchBeginPositionQ9928791) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ99287MF_0310992, 1, (STRLEN(?targetMotifMatchCigarQ99287MF_0310992) - STRLEN(REPLACE(?targetMotifMatchCigarQ99287MF_0310992, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ99287MF_0310992, 1, (STRLEN(?targetMotifMatchCigarQ99287MF_0310992) - STRLEN(REPLACE(?targetMotifMatchCigarQ99287MF_0310992, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) . BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0310993) - 1) AS ?thisPositionOn31) . BIND(?this AS ?pfs1t106) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) . FILTER ((BOUND(?thisPositionOn30) && BOUND(?thisPositionOn31))) . BIND(URI(CONCAT(STR(?this), '#MF_03109a27')) AS ?annotation27) . BIND(?this AS ?pfs26) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch111 faldo:location ?templateMotifSequenceMatchRegionQ99287112 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ99287114 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ99287MF_03109107 . ?templateMotifSequenceMatchRegionQ99287112 faldo:begin ?templateMotifSequenceMatchBeginQ99287113 . ?templateMotifSequenceMatchBeginQ99287113 faldo:position ?templateMotifSequenceMatchBeginPositionQ99287108 ; faldo:reference isoform:Q99287-1 . ?templateMotifSequenceProfileAlignmentOperationQ99287114 edam:has_input signature:MF_03109 ; rdf:type edam:operation_0300 . ?targetMotifMatch115 faldo:location ?targetMotifMatchRegionMatch116 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03109118 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ99287MF_03109109 . ?targetMotifMatchRegionMatch116 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03109117 . ?targetMotifMatchRegionMatchBeginMF_03109117 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03109110 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03109118 edam:has_input signature:MF_03109 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ99287MF_03109107, 1, (STRLEN(?templateMotifCigarQ99287MF_03109107) - STRLEN(REPLACE(?templateMotifCigarQ99287MF_03109107, CONCAT('^(?:-*[^-]){', STR(((706 - ?templateMotifSequenceMatchBeginPositionQ99287108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ99287MF_03109109, 1, (STRLEN(?targetMotifMatchCigarQ99287MF_03109109) - STRLEN(REPLACE(?targetMotifMatchCigarQ99287MF_03109109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ99287MF_03109109, 1, (STRLEN(?targetMotifMatchCigarQ99287MF_03109109) - STRLEN(REPLACE(?targetMotifMatchCigarQ99287MF_03109109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) . BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_03109110) - 1) AS ?thisPositionOn36) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ99287MF_03109107, 1, (STRLEN(?templateMotifCigarQ99287MF_03109107) - STRLEN(REPLACE(?templateMotifCigarQ99287MF_03109107, CONCAT('^(?:-*[^-]){', STR(((726 - ?templateMotifSequenceMatchBeginPositionQ99287108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ99287MF_03109109, 1, (STRLEN(?targetMotifMatchCigarQ99287MF_03109109) - STRLEN(REPLACE(?targetMotifMatchCigarQ99287MF_03109109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ99287MF_03109109, 1, (STRLEN(?targetMotifMatchCigarQ99287MF_03109109) - STRLEN(REPLACE(?targetMotifMatchCigarQ99287MF_03109109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) . BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_03109110) - 1) AS ?thisPositionOn37) . BIND(?this AS ?pfs1t123) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) . FILTER ((BOUND(?thisPositionOn36) && BOUND(?thisPositionOn37))) . BIND(URI(CONCAT(STR(?this), '#MF_03109a33')) AS ?annotation33) . BIND(?this AS ?pfs32) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch128 faldo:location ?templateMotifSequenceMatchRegionQ99287129 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ99287131 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ99287MF_03109124 . ?templateMotifSequenceMatchRegionQ99287129 faldo:begin ?templateMotifSequenceMatchBeginQ99287130 . ?templateMotifSequenceMatchBeginQ99287130 faldo:position ?templateMotifSequenceMatchBeginPositionQ99287125 ; faldo:reference isoform:Q99287-1 . ?templateMotifSequenceProfileAlignmentOperationQ99287131 edam:has_input signature:MF_03109 ; rdf:type edam:operation_0300 . ?targetMotifMatch132 faldo:location ?targetMotifMatchRegionMatch133 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03109135 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ99287MF_03109126 . ?targetMotifMatchRegionMatch133 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03109134 . ?targetMotifMatchRegionMatchBeginMF_03109134 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03109127 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03109135 edam:has_input signature:MF_03109 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ99287MF_03109124, 1, (STRLEN(?templateMotifCigarQ99287MF_03109124) - STRLEN(REPLACE(?templateMotifCigarQ99287MF_03109124, CONCAT('^(?:-*[^-]){', STR(((727 - ?templateMotifSequenceMatchBeginPositionQ99287125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ99287MF_03109126, 1, (STRLEN(?targetMotifMatchCigarQ99287MF_03109126) - STRLEN(REPLACE(?targetMotifMatchCigarQ99287MF_03109126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ99287MF_03109126, 1, (STRLEN(?targetMotifMatchCigarQ99287MF_03109126) - STRLEN(REPLACE(?targetMotifMatchCigarQ99287MF_03109126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) . BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_03109127) - 1) AS ?thisPositionOn42) . BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn43) . BIND(?this AS ?pfs1t138) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) . FILTER ((BOUND(?thisPositionOn42) && BOUND(?thisPositionOn43))) . BIND(URI(CONCAT(STR(?this), '#MF_03109a39')) AS ?annotation39) . BIND(?this AS ?pfs38) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch143 faldo:location ?templateMotifSequenceMatchRegionQ99287144 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ99287146 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ99287MF_03109139 . ?templateMotifSequenceMatchRegionQ99287144 faldo:begin ?templateMotifSequenceMatchBeginQ99287145 . ?templateMotifSequenceMatchBeginQ99287145 faldo:position ?templateMotifSequenceMatchBeginPositionQ99287140 ; faldo:reference isoform:Q99287-1 . ?templateMotifSequenceProfileAlignmentOperationQ99287146 edam:has_input signature:MF_03109 ; rdf:type edam:operation_0300 . ?targetMotifMatch147 faldo:location ?targetMotifMatchRegionMatch148 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03109150 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ99287MF_03109141 . ?targetMotifMatchRegionMatch148 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03109149 . ?targetMotifMatchRegionMatchBeginMF_03109149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03109142 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03109150 edam:has_input signature:MF_03109 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ99287MF_03109139, 1, (STRLEN(?templateMotifCigarQ99287MF_03109139) - STRLEN(REPLACE(?templateMotifCigarQ99287MF_03109139, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionQ99287140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ99287MF_03109141, 1, (STRLEN(?targetMotifMatchCigarQ99287MF_03109141) - STRLEN(REPLACE(?targetMotifMatchCigarQ99287MF_03109141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ99287MF_03109141, 1, (STRLEN(?targetMotifMatchCigarQ99287MF_03109141) - STRLEN(REPLACE(?targetMotifMatchCigarQ99287MF_03109141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) . BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_03109142) - 1) AS ?thisPositionOn49) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ99287MF_03109139, 1, (STRLEN(?templateMotifCigarQ99287MF_03109139) - STRLEN(REPLACE(?templateMotifCigarQ99287MF_03109139, CONCAT('^(?:-*[^-]){', STR(((51 - ?templateMotifSequenceMatchBeginPositionQ99287140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ99287MF_03109141, 1, (STRLEN(?targetMotifMatchCigarQ99287MF_03109141) - STRLEN(REPLACE(?targetMotifMatchCigarQ99287MF_03109141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ99287MF_03109141, 1, (STRLEN(?targetMotifMatchCigarQ99287MF_03109141) - STRLEN(REPLACE(?targetMotifMatchCigarQ99287MF_03109141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) . BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_03109142) - 1) AS ?thisPositionOn50) . BIND(?this AS ?pfs1t155) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) . FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]{4)GKS', SUBSTR(?thisSequenceValue, ?thisPositionOn49, (?thisPositionOn50 - ?thisPositionOn49)))) . BIND(URI(CONCAT(STR(?this), '#MF_03109a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4751 . BIND(?this AS ?case1) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:4751 . })) . BIND(?this AS ?case2) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33090 . BIND(?this AS ?case3) . BIND(URI(CONCAT(STR(?this), '#MF_03109a4')) AS ?name4) . BIND(URI(CONCAT(STR(?this), '#MF_03109a5')) AS ?name5) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4930 . BIND(?this AS ?case6) . BIND(URI(CONCAT(STR(?this), '#MF_03109a7')) AS ?name7) . BIND(URI(CONCAT(STR(?this), '#MF_03109a8')) AS ?name8) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4751 . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:4930 . })) . BIND(?this AS ?case9) . BIND(URI(CONCAT(STR(?this), '#MF_03109a10')) AS ?name10) . OPTIONAL { ?this up:encodedBy ?gene159 . ?gene159 up:locusName ?geneLocus157 . } OPTIONAL { ?this up:encodedBy ?gene159 . ?gene159 up:orfName ?geneOrf158 . } BIND(IF(BOUND(?geneLocus157), ?geneLocus157, ?geneOrf158) AS ?part156) . BIND(CONCAT('Protein ', ?part156) AS ?nameValue11) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon160 {taxon:33090 taxon:4751} ?thisOrganism rdfs:subClassOf+ ?supertaxon160 . })) . BIND(?this AS ?case12) . BIND(URI(CONCAT(STR(?this), '#MF_03109a13')) AS ?name13) . } OPTIONAL { ?this up:annotation ?samcc161 ; up:sequence ?thisSequence . ?samcc161 up:range ?samccr162 ; rdf:type up:Coiled_Coil_Annotation . ?samccr162 faldo:begin ?samccb163 ; faldo:end ?samcce164 . ?samccb163 faldo:position ?samccbp165 ; faldo:reference ?thisSequence . ?samcce164 faldo:position ?samccep166 ; faldo:reference ?thisSequence . BIND(?this AS ?sam51) . } BIND(URI(CONCAT(STR(?this), '#MF_03109a57')) AS ?keyword57) . } "xsd:string |
| http://purl.uniprot.org/unirules/MF_03109 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_03109#construct |