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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_03141#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03141#construct-template-54 |
| http://purl.uniprot.org/unirules/MF_03141#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03141#construct-template-156 |
| http://purl.uniprot.org/unirules/MF_03141#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03141#construct-template-39 |
| http://purl.uniprot.org/unirules/MF_03141#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03141#construct-template-130 |
| http://purl.uniprot.org/unirules/MF_03141#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03141#construct-template-154 |
| http://purl.uniprot.org/unirules/MF_03141#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03141#construct-template-139 |
| http://purl.uniprot.org/unirules/MF_03141#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03141#construct-template-113 |
| http://purl.uniprot.org/unirules/MF_03141#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03141#construct-template-152 |
| http://purl.uniprot.org/unirules/MF_03141#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03141#construct-template-159 |
| http://purl.uniprot.org/unirules/MF_03141#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03141#construct-template-134 |
| http://purl.uniprot.org/unirules/MF_03141#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03141#construct-template-158 |
| http://purl.uniprot.org/unirules/MF_03141#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03141#construct-template-132 |
| http://purl.uniprot.org/unirules/MF_03141#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03141#construct-template-17 |
| http://purl.uniprot.org/unirules/MF_03141#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03141#construct-template-76 |
| http://purl.uniprot.org/unirules/MF_03141#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_03141#construct-template-137 |
| http://purl.uniprot.org/unirules/MF_03141#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_03141#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_03141#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_03141#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_03141#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_03141#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:838965 up:source unirule:MF_03141 .
_:838966 up:source unirule:MF_03141 .
_:838967 up:source unirule:MF_03141 .
_:838968 up:source unirule:MF_03141 .
_:838969 up:source unirule:MF_03141 .
_:838970 up:source unirule:MF_03141 .
_:838971 up:source unirule:MF_03141 .
_:838972 up:source unirule:MF_03141 .
_:838973 up:source unirule:MF_03141 .
_:838974 up:source unirule:MF_03141 .
_:838975 up:source unirule:MF_03141 .
_:838976 up:source unirule:MF_03141 .
_:838977 up:source unirule:MF_03141 .
_:838978 up:source unirule:MF_03141 .
_:838979 up:source unirule:MF_03141 .
_:838980 up:source unirule:MF_03141 .
_:838981 up:source unirule:MF_03141 .
_:838982 up:source unirule:MF_03141 .
_:838983 up:source unirule:MF_03141 .
_:838984 up:source unirule:MF_03141 .
_:838985 up:source unirule:MF_03141 .
_:838986 up:source unirule:MF_03141 .
_:838987 up:source unirule:MF_03141 .
_:838988 up:source unirule:MF_03141 .
_:838989 up:source unirule:MF_03141 .
_:838990 up:source unirule:MF_03141 .
_:838991 up:source unirule:MF_03141 .
_:838992 up:source unirule:MF_03141 .
_:838993 up:source unirule:MF_03141 .
_:838994 up:source unirule:MF_03141 .
_:838995 up:source unirule:MF_03141 .
?this up:annotation ?annotation0 ;
up:classifiedWith GO:0000132 ,
GO:0005737 ,
GO:0005875 ,
GO:0007017 ,
GO:0051012 ,
GO:0070840 ,
keyword:131 ,
keyword:132 ,
keyword:175 ,
keyword:206 ,
keyword:493 ,
keyword:498 ,
keyword:813 ,
keyword:963 .
?annotation0 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the WD repeat LIS1/nudF family.' .
?case2 up:classifiedWith keyword:442 ,
keyword:443 ,
keyword:472 ,
keyword:539 .
?case4 up:classifiedWith GO:0007399 ,
keyword:217 ,
keyword:221 ,
keyword:524 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interaction with NDEL1' .
?pfsb17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interaction with NDE1' .
?pfsb23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Required for self-association and interaction with PAFAH1B2 and PAFAH1B3' .
?pfsb29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interaction with dynein and dynactin' .
?pfsb35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interaction with DCX' .
?pfsb41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interaction with NDEL1' .
?pfsb47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
rdf:type up:Initiator_Methionine_Annotation ;
rdfs:comment 'Removed' .
?pfsb53 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?sam57 up:classifiedWith keyword:175 .
?coiledCoil58 faldo:begin ?coiledCoilb59 ;
faldo:end ?coiledCoile60 .
?coiledCoilb59 faldo:position ?coiledCoilbp61 .
?coiledCoile60 faldo:position ?coiledCoilep62 .
?keyword63 up:range ?coiledCoil58 .
_:838996 a rdf:Statement ;
up:attribution _:838965 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:838997 a rdf:Statement ;
up:attribution _:838966 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:131 .
_:838998 a rdf:Statement ;
up:attribution _:838967 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:132 .
_:838999 a rdf:Statement ;
up:attribution _:838968 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:175 .
_:839000 a rdf:Statement ;
up:attribution _:838969 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:839001 a rdf:Statement ;
up:attribution _:838970 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:206 .
_:839002 a rdf:Statement ;
up:attribution _:838971 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:493 .
_:839003 a rdf:Statement ;
up:attribution _:838972 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:498 .
_:839004 a rdf:Statement ;
up:attribution _:838973 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:813 .
_:839005 a rdf:Statement ;
up:attribution _:838974 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:839006 a rdf:Statement ;
up:attribution _:838975 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005875 .
_:839007 a rdf:Statement ;
up:attribution _:838976 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070840 .
_:839008 a rdf:Statement ;
up:attribution _:838977 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051012 .
_:839009 a rdf:Statement ;
up:attribution _:838978 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000132 .
_:839010 a rdf:Statement ;
up:attribution _:838979 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0007017 .
_:839011 a rdf:Statement ;
up:attribution _:838980 ;
rdf:subject ?case2 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:442 .
_:839012 a rdf:Statement ;
up:attribution _:838981 ;
rdf:subject ?case2 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:443 .
_:839013 a rdf:Statement ;
up:attribution _:838982 ;
rdf:subject ?case2 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:839014 a rdf:Statement ;
up:attribution _:838983 ;
rdf:subject ?case2 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:539 .
_:839015 a rdf:Statement ;
up:attribution _:838984 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:217 .
_:839016 a rdf:Statement ;
up:attribution _:838985 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:221 .
_:839017 a rdf:Statement ;
up:attribution _:838986 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:524 .
_:839018 a rdf:Statement ;
up:attribution _:838987 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0007399 .
_:839019 a rdf:Statement ;
up:source unirule:MF_03141 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:839020 a rdf:Statement ;
up:attribution _:838988 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:839021 a rdf:Statement ;
up:source unirule:MF_03141 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:839022 a rdf:Statement ;
up:attribution _:838989 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:839023 a rdf:Statement ;
up:source unirule:MF_03141 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:839024 a rdf:Statement ;
up:attribution _:838990 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:839025 a rdf:Statement ;
up:source unirule:MF_03141 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:839026 a rdf:Statement ;
up:attribution _:838991 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:839027 a rdf:Statement ;
up:source unirule:MF_03141 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:839028 a rdf:Statement ;
up:attribution _:838992 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:839029 a rdf:Statement ;
up:source unirule:MF_03141 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:839030 a rdf:Statement ;
up:attribution _:838993 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:839031 a rdf:Statement ;
up:source unirule:MF_03141 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:839032 a rdf:Statement ;
up:attribution _:838994 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:839033 a rdf:Statement ;
up:attribution _:838995 ;
rdf:subject ?sam57 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:175 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03141
#Rule MF_03141 Created by:? on:2012-10-31 Modified by:Edouard de Castro on:2019-11-20
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03141 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03141a0')) AS ?annotation0) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch68 faldo:location ?templateMotifSequenceMatchRegionP4303469 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4303471 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP43034MF_0314164 .
?templateMotifSequenceMatchRegionP4303469 faldo:begin ?templateMotifSequenceMatchBeginP4303470 .
?templateMotifSequenceMatchBeginP4303470 faldo:position ?templateMotifSequenceMatchBeginPositionP4303465 ;
faldo:reference isoform:P43034-1 .
?templateMotifSequenceProfileAlignmentOperationP4303471 edam:has_input signature:MF_03141 ;
rdf:type edam:operation_0300 .
?targetMotifMatch72 faldo:location ?targetMotifMatchRegionMatch73 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0314175 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP43034MF_0314166 .
?targetMotifMatchRegionMatch73 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0314174 .
?targetMotifMatchRegionMatchBeginMF_0314174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0314167 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0314175 edam:has_input signature:MF_03141 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(1 AS ?thisPositionOn19) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43034MF_0314164, 1, (STRLEN(?templateMotifCigarP43034MF_0314164) - STRLEN(REPLACE(?templateMotifCigarP43034MF_0314164, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionP4303465) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43034MF_0314166, 1, (STRLEN(?targetMotifMatchCigarP43034MF_0314166) - STRLEN(REPLACE(?targetMotifMatchCigarP43034MF_0314166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43034MF_0314166, 1, (STRLEN(?targetMotifMatchCigarP43034MF_0314166) - STRLEN(REPLACE(?targetMotifMatchCigarP43034MF_0314166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) .
BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0314167) - 1) AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) .
FILTER ((BOUND(?thisPositionOn19) && BOUND(?thisPositionOn20))) .
BIND(URI(CONCAT(STR(?this), '#MF_03141a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch83 faldo:location ?templateMotifSequenceMatchRegionP4303484 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4303486 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP43034MF_0314179 .
?templateMotifSequenceMatchRegionP4303484 faldo:begin ?templateMotifSequenceMatchBeginP4303485 .
?templateMotifSequenceMatchBeginP4303485 faldo:position ?templateMotifSequenceMatchBeginPositionP4303480 ;
faldo:reference isoform:P43034-1 .
?templateMotifSequenceProfileAlignmentOperationP4303486 edam:has_input signature:MF_03141 ;
rdf:type edam:operation_0300 .
?targetMotifMatch87 faldo:location ?targetMotifMatchRegionMatch88 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0314190 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP43034MF_0314181 .
?targetMotifMatchRegionMatch88 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0314189 .
?targetMotifMatchRegionMatchBeginMF_0314189 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0314182 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0314190 edam:has_input signature:MF_03141 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(1 AS ?thisPositionOn25) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43034MF_0314179, 1, (STRLEN(?templateMotifCigarP43034MF_0314179) - STRLEN(REPLACE(?templateMotifCigarP43034MF_0314179, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionP4303480) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43034MF_0314181, 1, (STRLEN(?targetMotifMatchCigarP43034MF_0314181) - STRLEN(REPLACE(?targetMotifMatchCigarP43034MF_0314181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43034MF_0314181, 1, (STRLEN(?targetMotifMatchCigarP43034MF_0314181) - STRLEN(REPLACE(?targetMotifMatchCigarP43034MF_0314181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0314182) - 1) AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse24) .
FILTER ((BOUND(?thisPositionOn25) && BOUND(?thisPositionOn26))) .
BIND(URI(CONCAT(STR(?this), '#MF_03141a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionP4303499 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP43034101 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP43034MF_0314194 .
?templateMotifSequenceMatchRegionP4303499 faldo:begin ?templateMotifSequenceMatchBeginP43034100 .
?templateMotifSequenceMatchBeginP43034100 faldo:position ?templateMotifSequenceMatchBeginPositionP4303495 ;
faldo:reference isoform:P43034-1 .
?templateMotifSequenceProfileAlignmentOperationP43034101 edam:has_input signature:MF_03141 ;
rdf:type edam:operation_0300 .
?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03141105 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP43034MF_0314196 .
?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03141104 .
?targetMotifMatchRegionMatchBeginMF_03141104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0314197 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03141105 edam:has_input signature:MF_03141 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(1 AS ?thisPositionOn31) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43034MF_0314194, 1, (STRLEN(?templateMotifCigarP43034MF_0314194) - STRLEN(REPLACE(?templateMotifCigarP43034MF_0314194, CONCAT('^(?:-*[^-]){', STR(((38 - ?templateMotifSequenceMatchBeginPositionP4303495) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43034MF_0314196, 1, (STRLEN(?targetMotifMatchCigarP43034MF_0314196) - STRLEN(REPLACE(?targetMotifMatchCigarP43034MF_0314196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43034MF_0314196, 1, (STRLEN(?targetMotifMatchCigarP43034MF_0314196) - STRLEN(REPLACE(?targetMotifMatchCigarP43034MF_0314196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0314197) - 1) AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse30) .
FILTER ((BOUND(?thisPositionOn31) && BOUND(?thisPositionOn32))) .
BIND(URI(CONCAT(STR(?this), '#MF_03141a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionP43034114 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP43034116 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP43034MF_03141109 .
?templateMotifSequenceMatchRegionP43034114 faldo:begin ?templateMotifSequenceMatchBeginP43034115 .
?templateMotifSequenceMatchBeginP43034115 faldo:position ?templateMotifSequenceMatchBeginPositionP43034110 ;
faldo:reference isoform:P43034-1 .
?templateMotifSequenceProfileAlignmentOperationP43034116 edam:has_input signature:MF_03141 ;
rdf:type edam:operation_0300 .
?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03141120 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP43034MF_03141111 .
?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03141119 .
?targetMotifMatchRegionMatchBeginMF_03141119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03141112 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03141120 edam:has_input signature:MF_03141 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43034MF_03141109, 1, (STRLEN(?templateMotifCigarP43034MF_03141109) - STRLEN(REPLACE(?templateMotifCigarP43034MF_03141109, CONCAT('^(?:-*[^-]){', STR(((83 - ?templateMotifSequenceMatchBeginPositionP43034110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43034MF_03141111, 1, (STRLEN(?targetMotifMatchCigarP43034MF_03141111) - STRLEN(REPLACE(?targetMotifMatchCigarP43034MF_03141111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43034MF_03141111, 1, (STRLEN(?targetMotifMatchCigarP43034MF_03141111) - STRLEN(REPLACE(?targetMotifMatchCigarP43034MF_03141111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) .
BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_03141112) - 1) AS ?thisPositionOn37) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse36) .
FILTER ((BOUND(?thisPositionOn37) && BOUND(?thisPositionOn38))) .
BIND(URI(CONCAT(STR(?this), '#MF_03141a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch128 faldo:location ?templateMotifSequenceMatchRegionP43034129 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP43034131 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP43034MF_03141124 .
?templateMotifSequenceMatchRegionP43034129 faldo:begin ?templateMotifSequenceMatchBeginP43034130 .
?templateMotifSequenceMatchBeginP43034130 faldo:position ?templateMotifSequenceMatchBeginPositionP43034125 ;
faldo:reference isoform:P43034-1 .
?templateMotifSequenceProfileAlignmentOperationP43034131 edam:has_input signature:MF_03141 ;
rdf:type edam:operation_0300 .
?targetMotifMatch132 faldo:location ?targetMotifMatchRegionMatch133 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03141135 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP43034MF_03141126 .
?targetMotifMatchRegionMatch133 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03141134 .
?targetMotifMatchRegionMatchBeginMF_03141134 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03141127 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03141135 edam:has_input signature:MF_03141 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43034MF_03141124, 1, (STRLEN(?templateMotifCigarP43034MF_03141124) - STRLEN(REPLACE(?templateMotifCigarP43034MF_03141124, CONCAT('^(?:-*[^-]){', STR(((367 - ?templateMotifSequenceMatchBeginPositionP43034125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43034MF_03141126, 1, (STRLEN(?targetMotifMatchCigarP43034MF_03141126) - STRLEN(REPLACE(?targetMotifMatchCigarP43034MF_03141126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43034MF_03141126, 1, (STRLEN(?targetMotifMatchCigarP43034MF_03141126) - STRLEN(REPLACE(?targetMotifMatchCigarP43034MF_03141126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) .
BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_03141127) - 1) AS ?thisPositionOn43) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43034MF_03141124, 1, (STRLEN(?templateMotifCigarP43034MF_03141124) - STRLEN(REPLACE(?templateMotifCigarP43034MF_03141124, CONCAT('^(?:-*[^-]){', STR(((409 - ?templateMotifSequenceMatchBeginPositionP43034125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43034MF_03141126, 1, (STRLEN(?targetMotifMatchCigarP43034MF_03141126) - STRLEN(REPLACE(?targetMotifMatchCigarP43034MF_03141126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43034MF_03141126, 1, (STRLEN(?targetMotifMatchCigarP43034MF_03141126) - STRLEN(REPLACE(?targetMotifMatchCigarP43034MF_03141126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) .
BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_03141127) - 1) AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t140) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse42) .
FILTER ((BOUND(?thisPositionOn43) && BOUND(?thisPositionOn44))) .
BIND(URI(CONCAT(STR(?this), '#MF_03141a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch145 faldo:location ?templateMotifSequenceMatchRegionP43034146 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP43034148 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP43034MF_03141141 .
?templateMotifSequenceMatchRegionP43034146 faldo:begin ?templateMotifSequenceMatchBeginP43034147 .
?templateMotifSequenceMatchBeginP43034147 faldo:position ?templateMotifSequenceMatchBeginPositionP43034142 ;
faldo:reference isoform:P43034-1 .
?templateMotifSequenceProfileAlignmentOperationP43034148 edam:has_input signature:MF_03141 ;
rdf:type edam:operation_0300 .
?targetMotifMatch149 faldo:location ?targetMotifMatchRegionMatch150 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03141152 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP43034MF_03141143 .
?targetMotifMatchRegionMatch150 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03141151 .
?targetMotifMatchRegionMatchBeginMF_03141151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03141144 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03141152 edam:has_input signature:MF_03141 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43034MF_03141141, 1, (STRLEN(?templateMotifCigarP43034MF_03141141) - STRLEN(REPLACE(?templateMotifCigarP43034MF_03141141, CONCAT('^(?:-*[^-]){', STR(((388 - ?templateMotifSequenceMatchBeginPositionP43034142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43034MF_03141143, 1, (STRLEN(?targetMotifMatchCigarP43034MF_03141143) - STRLEN(REPLACE(?targetMotifMatchCigarP43034MF_03141143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43034MF_03141143, 1, (STRLEN(?targetMotifMatchCigarP43034MF_03141143) - STRLEN(REPLACE(?targetMotifMatchCigarP43034MF_03141143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) .
BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_03141144) - 1) AS ?thisPositionOn49) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t155) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse48) .
FILTER ((BOUND(?thisPositionOn49) && BOUND(?thisPositionOn50))) .
BIND(URI(CONCAT(STR(?this), '#MF_03141a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch160 faldo:location ?templateMotifSequenceMatchRegionP43034161 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP43034163 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP43034MF_03141156 .
?templateMotifSequenceMatchRegionP43034161 faldo:begin ?templateMotifSequenceMatchBeginP43034162 .
?templateMotifSequenceMatchBeginP43034162 faldo:position ?templateMotifSequenceMatchBeginPositionP43034157 ;
faldo:reference isoform:P43034-1 .
?templateMotifSequenceProfileAlignmentOperationP43034163 edam:has_input signature:MF_03141 ;
rdf:type edam:operation_0300 .
?targetMotifMatch164 faldo:location ?targetMotifMatchRegionMatch165 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03141167 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP43034MF_03141158 .
?targetMotifMatchRegionMatch165 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03141166 .
?targetMotifMatchRegionMatchBeginMF_03141166 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03141159 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03141167 edam:has_input signature:MF_03141 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43034MF_03141156, 1, (STRLEN(?templateMotifCigarP43034MF_03141156) - STRLEN(REPLACE(?templateMotifCigarP43034MF_03141156, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP43034157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43034MF_03141158, 1, (STRLEN(?targetMotifMatchCigarP43034MF_03141158) - STRLEN(REPLACE(?targetMotifMatchCigarP43034MF_03141158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43034MF_03141158, 1, (STRLEN(?targetMotifMatchCigarP43034MF_03141158) - STRLEN(REPLACE(?targetMotifMatchCigarP43034MF_03141158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) .
BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_03141159) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs2t170) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_03141a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:6231 .
BIND(?this AS ?case1) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(?this AS ?case2) .
}
OPTIONAL {
?this a up:Protein .
?this rdfs:seeAlso |
| http://purl.uniprot.org/unirules/MF_03141 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_03141#construct |