| http://purl.uniprot.org/unirules/MF_03145#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:842386 up:source unirule:MF_03145 .
_:842387 up:source unirule:MF_03145 .
_:842388 up:source unirule:MF_03145 .
_:842389 up:source unirule:MF_03145 .
_:842390 up:source unirule:MF_03145 .
_:842391 up:source unirule:MF_03145 .
_:842392 up:source unirule:MF_03145 .
_:842393 up:source unirule:MF_03145 .
_:842394 up:source unirule:MF_03145 .
_:842395 up:source unirule:MF_03145 .
_:842396 up:source unirule:MF_03145 .
_:842397 up:source unirule:MF_03145 .
_:842398 up:source unirule:MF_03145 .
_:842399 up:source unirule:MF_03145 .
_:842400 up:source unirule:MF_03145 .
_:842401 up:source unirule:MF_03145 .
_:842402 up:source unirule:MF_03145 .
_:842403 up:source unirule:MF_03145 .
_:842404 up:source unirule:MF_03145 .
_:842405 up:source unirule:MF_03145 .
_:842406 up:source unirule:MF_03145 .
_:842407 up:source unirule:MF_03145 .
_:842408 up:source unirule:MF_03145 .
_:842409 up:source unirule:MF_03145 .
_:842410 up:source unirule:MF_03145 .
_:842411 up:source unirule:MF_03145 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation9 ;
up:classifiedWith GO:0000034 ,
GO:0005634 ,
GO:0005737 ,
GO:0006146 ,
GO:0043103 ,
keyword:378 ,
keyword:539 ,
keyword:546 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.5.4.2' ;
up:fullName 'Adenine deaminase' ;
up:shortName 'ADE' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Adenine aminohydrolase' ;
up:shortName 'AAH' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'AAH1' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?annotation6li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. Adenine deaminase type 2 subfamily.' .
?case10 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?pfs11 up:annotation ?annotation12 ,
?annotation18 ,
?annotation24 ,
?annotation30 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:29105 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:29105 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:29105 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:29105 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf ?molecule47 .
?molecule47 rdfs:label 'substrate' .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for catalytic activity' .
?pfsb52 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
_:842412 a rdf:Statement ;
up:attribution _:842386 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:842413 a rdf:Statement ;
up:attribution _:842387 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:842414 a rdf:Statement ;
up:attribution _:842388 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:842415 a rdf:Statement ;
up:attribution _:842389 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:842416 a rdf:Statement ;
up:attribution _:842390 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:842417 a rdf:Statement ;
up:attribution _:842391 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:842418 a rdf:Statement ;
up:attribution _:842392 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:842419 a rdf:Statement ;
up:attribution _:842393 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:842420 a rdf:Statement ;
up:attribution _:842394 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:539 .
_:842421 a rdf:Statement ;
up:attribution _:842395 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:842422 a rdf:Statement ;
up:attribution _:842396 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:546 .
_:842423 a rdf:Statement ;
up:attribution _:842397 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:842424 a rdf:Statement ;
up:attribution _:842398 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005634 .
_:842425 a rdf:Statement ;
up:attribution _:842399 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000034 .
_:842426 a rdf:Statement ;
up:attribution _:842400 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006146 .
_:842427 a rdf:Statement ;
up:attribution _:842401 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0043103 .
_:842428 a rdf:Statement ;
up:attribution _:842402 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:842429 a rdf:Statement ;
up:attribution _:842403 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:842430 a rdf:Statement ;
up:attribution _:842404 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:842431 a rdf:Statement ;
up:source unirule:MF_03145 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:842432 a rdf:Statement ;
up:attribution _:842405 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:842433 a rdf:Statement ;
up:source unirule:MF_03145 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:842434 a rdf:Statement ;
up:attribution _:842406 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:842435 a rdf:Statement ;
up:source unirule:MF_03145 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:842436 a rdf:Statement ;
up:attribution _:842407 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:842437 a rdf:Statement ;
up:source unirule:MF_03145 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:842438 a rdf:Statement ;
up:attribution _:842408 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:842439 a rdf:Statement ;
up:source unirule:MF_03145 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:842440 a rdf:Statement ;
up:attribution _:842409 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:842441 a rdf:Statement ;
up:source unirule:MF_03145 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:842442 a rdf:Statement ;
up:attribution _:842410 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:842443 a rdf:Statement ;
up:source unirule:MF_03145 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:842444 a rdf:Statement ;
up:attribution _:842411 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03145
#Rule MF_03145 Created by:? on:2012-08-22 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01962 .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(URI(CONCAT(STR(?this), '#MF_03145a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03145a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_03145a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03145a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_03145a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_03145a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch60 faldo:location ?templateMotifSequenceMatchRegionQ9I6Y461 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I6Y463 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I6Y4MF_0196256 .
?templateMotifSequenceMatchRegionQ9I6Y461 faldo:begin ?templateMotifSequenceMatchBeginQ9I6Y462 .
?templateMotifSequenceMatchBeginQ9I6Y462 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I6Y457 ;
faldo:reference isoform:Q9I6Y4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I6Y463 edam:has_input signature:MF_01962 ;
rdf:type edam:operation_0300 .
?targetMotifMatch64 faldo:location ?targetMotifMatchRegionMatch65 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0196267 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I6Y4MF_0196258 .
?targetMotifMatchRegionMatch65 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0196266 .
?targetMotifMatchRegionMatchBeginMF_0196266 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0196259 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0196267 edam:has_input signature:MF_01962 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I6Y4MF_0196256, 1, (STRLEN(?templateMotifCigarQ9I6Y4MF_0196256) - STRLEN(REPLACE(?templateMotifCigarQ9I6Y4MF_0196256, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionQ9I6Y457) + 1)), '}'), '')))), '[a-z]', '')) AS ?step168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I6Y4MF_0196258, 1, (STRLEN(?targetMotifMatchCigarQ9I6Y4MF_0196258) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6Y4MF_0196258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I6Y4MF_0196258, 1, (STRLEN(?targetMotifMatchCigarQ9I6Y4MF_0196258) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6Y4MF_0196258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), '')))), '[^-]', ''))) AS ?step269) .
BIND(((?step269 + ?targetMotifMatchRegionMatchBeginPositionMF_0196259) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I6Y4MF_0196256, 1, (STRLEN(?templateMotifCigarQ9I6Y4MF_0196256) - STRLEN(REPLACE(?templateMotifCigarQ9I6Y4MF_0196256, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionQ9I6Y457) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I6Y4MF_0196258, 1, (STRLEN(?targetMotifMatchCigarQ9I6Y4MF_0196258) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6Y4MF_0196258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I6Y4MF_0196258, 1, (STRLEN(?targetMotifMatchCigarQ9I6Y4MF_0196258) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6Y4MF_0196258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) .
BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0196259) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I6Y4MF_0196256, 1, (STRLEN(?templateMotifCigarQ9I6Y4MF_0196256) - STRLEN(REPLACE(?templateMotifCigarQ9I6Y4MF_0196256, CONCAT('^(?:-*[^-]){', STR(((194 - ?templateMotifSequenceMatchBeginPositionQ9I6Y457) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I6Y4MF_0196258, 1, (STRLEN(?targetMotifMatchCigarQ9I6Y4MF_0196258) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6Y4MF_0196258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I6Y4MF_0196258, 1, (STRLEN(?targetMotifMatchCigarQ9I6Y4MF_0196258) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6Y4MF_0196258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) .
BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0196259) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I6Y4MF_0196256, 1, (STRLEN(?templateMotifCigarQ9I6Y4MF_0196256) - STRLEN(REPLACE(?templateMotifCigarQ9I6Y4MF_0196256, CONCAT('^(?:-*[^-]){', STR(((275 - ?templateMotifSequenceMatchBeginPositionQ9I6Y457) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I6Y4MF_0196258, 1, (STRLEN(?targetMotifMatchCigarQ9I6Y4MF_0196258) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6Y4MF_0196258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I6Y4MF_0196258, 1, (STRLEN(?targetMotifMatchCigarQ9I6Y4MF_0196258) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6Y4MF_0196258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) .
BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0196259) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'D')) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch84 faldo:location ?templateMotifSequenceMatchRegionQ9I6Y485 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I6Y487 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I6Y4MF_0196280 .
?templateMotifSequenceMatchRegionQ9I6Y485 faldo:begin ?templateMotifSequenceMatchBeginQ9I6Y486 .
?templateMotifSequenceMatchBeginQ9I6Y486 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I6Y481 ;
faldo:reference isoform:Q9I6Y4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I6Y487 edam:has_input signature:MF_01962 ;
rdf:type edam:operation_0300 .
?targetMotifMatch88 faldo:location ?targetMotifMatchRegionMatch89 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0196291 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I6Y4MF_0196282 .
?targetMotifMatchRegionMatch89 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0196290 .
?targetMotifMatchRegionMatchBeginMF_0196290 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0196283 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0196291 edam:has_input signature:MF_01962 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I6Y4MF_0196280, 1, (STRLEN(?templateMotifCigarQ9I6Y4MF_0196280) - STRLEN(REPLACE(?templateMotifCigarQ9I6Y4MF_0196280, CONCAT('^(?:-*[^-]){', STR(((197 - ?templateMotifSequenceMatchBeginPositionQ9I6Y481) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I6Y4MF_0196282, 1, (STRLEN(?targetMotifMatchCigarQ9I6Y4MF_0196282) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6Y4MF_0196282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I6Y4MF_0196282, 1, (STRLEN(?targetMotifMatchCigarQ9I6Y4MF_0196282) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6Y4MF_0196282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) .
BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0196283) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs2t94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03145a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch99 faldo:location ?templateMotifSequenceMatchRegionQ9I6Y4100 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I6Y4102 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I6Y4MF_0196295 .
?templateMotifSequenceMatchRegionQ9I6Y4100 faldo:begin ?templateMotifSequenceMatchBeginQ9I6Y4101 .
?templateMotifSequenceMatchBeginQ9I6Y4101 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I6Y496 ;
faldo:reference isoform:Q9I6Y4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I6Y4102 edam:has_input signature:MF_01962 ;
rdf:type edam:operation_0300 .
?targetMotifMatch103 faldo:location ?targetMotifMatchRegionMatch104 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01962106 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I6Y4MF_0196297 .
?targetMotifMatchRegionMatch104 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01962105 .
?targetMotifMatchRegionMatchBeginMF_01962105 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0196298 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01962106 edam:has_input signature:MF_01962 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I6Y4MF_0196295, 1, (STRLEN(?templateMotifCigarQ9I6Y4MF_0196295) - STRLEN(REPLACE(?templateMotifCigarQ9I6Y4MF_0196295, CONCAT('^(?:-*[^-]){', STR(((276 - ?templateMotifSequenceMatchBeginPositionQ9I6Y496) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I6Y4MF_0196297, 1, (STRLEN(?targetMotifMatchCigarQ9I6Y4MF_0196297) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6Y4MF_0196297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I6Y4MF_0196297, 1, (STRLEN(?targetMotifMatchCigarQ9I6Y4MF_0196297) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6Y4MF_0196297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0196298) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs2t109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03145a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch114 faldo:location ?templateMotifSequenceMatchRegionQ9I6Y4115 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I6Y4117 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I6Y4MF_01962110 .
?templateMotifSequenceMatchRegionQ9I6Y4115 faldo:begin ?templateMotifSequenceMatchBeginQ9I6Y4116 .
?templateMotifSequenceMatchBeginQ9I6Y4116 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I6Y4111 ;
faldo:reference isoform:Q9I6Y4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I6Y4117 edam:has_input signature:MF_01962 ;
rdf:type edam:operation_0300 .
?targetMotifMatch118 faldo:location ?targetMotifMatchRegionMatch119 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01962121 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I6Y4MF_01962112 .
?targetMotifMatchRegionMatch119 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01962120 .
?targetMotifMatchRegionMatchBeginMF_01962120 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01962113 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01962121 edam:has_input signature:MF_01962 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I6Y4MF_01962110, 1, (STRLEN(?templateMotifCigarQ9I6Y4MF_01962110) - STRLEN(REPLACE(?templateMotifCigarQ9I6Y4MF_01962110, CONCAT('^(?:-*[^-]){', STR(((218 - ?templateMotifSequenceMatchBeginPositionQ9I6Y4111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I6Y4MF_01962112, 1, (STRLEN(?targetMotifMatchCigarQ9I6Y4MF_01962112) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6Y4MF_01962112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I6Y4MF_01962112, 1, (STRLEN(?targetMotifMatchCigarQ9I6Y4MF_01962112) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I6Y4MF_01962112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) .
BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_01962113) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs2t124) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03145a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag125) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag125, ?UNBOUND_VARIABLE) AS ?case10) .
}
"xsd:string |
