| http://purl.uniprot.org/unirules/MF_03147#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:843441 up:source unirule:MF_03147 .
_:843442 up:source unirule:MF_03147 .
_:843443 up:source unirule:MF_03147 .
_:843444 up:source unirule:MF_03147 .
_:843445 up:source unirule:MF_03147 .
_:843446 up:source unirule:MF_03147 .
_:843447 up:source unirule:MF_03147 .
_:843448 up:source unirule:MF_03147 .
_:843449 up:source unirule:MF_03147 .
_:843450 up:source unirule:MF_03147 .
_:843451 up:source unirule:MF_03147 .
_:843452 up:source unirule:MF_03147 .
_:843453 up:source unirule:MF_03147 .
_:843454 up:source unirule:MF_03147 .
_:843455 up:source unirule:MF_03147 .
_:843456 up:source unirule:MF_03147 .
_:843457 up:source unirule:MF_03147 .
_:843458 up:source unirule:MF_03147 .
_:843459 up:source unirule:MF_03147 .
_:843460 up:source unirule:MF_03147 .
_:843461 up:source unirule:MF_03147 .
_:843462 up:source unirule:MF_03147 .
_:843463 up:source unirule:MF_03147 .
_:843464 up:source unirule:MF_03147 .
_:843465 up:source unirule:MF_03147 .
_:843466 up:source unirule:MF_03147 .
_:843467 up:source unirule:MF_03147 .
_:843468 up:source unirule:MF_03147 .
_:843469 up:source unirule:MF_03147 .
_:843470 up:source unirule:MF_03147 .
_:843471 up:source unirule:MF_03147 .
_:843472 up:source unirule:MF_03147 .
?this up:annotation ?annotation0 ,
?annotation2 ;
up:classifiedWith GO:0016884 ,
GO:0030956 ,
GO:0032543 ,
GO:0050567 ,
GO:0070681 ,
keyword:436 ,
keyword:547 ,
keyword:648 ,
keyword:67 .
?annotation0 up:activity ?activity1 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity1 up:catalyticActivity .
?annotation2 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the GatB/GatE family. GatB subfamily.' .
?case3 up:classifiedWith keyword:809 .
?case5 up:classifiedWith GO:0009507 ,
keyword:150 ,
keyword:934 ;
up:recommendedName ?name6 .
?name6 up:ecName '6.3.5.-' ;
up:fullName 'Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial' ;
up:shortName 'Glu-AdT subunit B' ;
rdf:type up:Structured_Name .
?case8 up:classifiedWith GO:0005739 ,
keyword:496 .
?case9 up:alternativeName ?name11 ,
?name12 ;
up:precursor "true"^^xsd:boolean ;
up:recommendedName ?name10 .
?name10 up:ecName '6.3.5.-' ;
up:fullName 'Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial' ;
up:shortName 'Glu-AdT subunit B' ;
rdf:type up:Structured_Name .
?name11 up:fullName 'Cytochrome oxidase assembly factor PET112 homolog' ;
rdf:type up:Structured_Name .
?name12 up:fullName 'PET112-like' ;
rdf:type up:Structured_Name .
?case13 up:classifiedWith GO:0070111 ,
keyword:934 ,
keyword:994 ;
up:recommendedName ?name14 .
?name14 up:ecName '6.3.5.-' ;
up:fullName 'Glutamyl-tRNA(Gln) amidotransferase subunit B, organellar chromatophore' ;
up:shortName 'Glu-AdT subunit B' ;
rdf:type up:Structured_Name .
?case17 up:alternativeName ?name19 ,
?name20 ;
up:recommendedName ?name18 .
?name18 up:ecName '6.3.5.-' ;
up:fullName 'Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial' ;
up:shortName 'Glu-AdT subunit B' ;
rdf:type up:Structured_Name .
?name19 up:fullName 'Cytochrome oxidase assembly factor PET112 homolog' ;
rdf:type up:Structured_Name .
?name20 up:fullName 'PET112-like' ;
rdf:type up:Structured_Name .
?case21 up:recommendedName ?name22 .
?name22 up:ecName '6.3.5.-' ;
up:fullName 'Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial' ;
up:shortName 'Glu-AdT subunit B' ;
rdf:type up:Structured_Name .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
rdf:type up:Transit_Peptide_Annotation ;
rdfs:comment 'Mitochondrion' .
?pfsb25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
rdf:type up:Chain_Annotation ;
rdfs:comment '@PROTEIN_NAME@' .
?pfsb31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
_:843473 a rdf:Statement ;
up:attribution _:843441 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:843474 a rdf:Statement ;
up:attribution _:843442 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:843475 a rdf:Statement ;
up:attribution _:843443 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:843476 a rdf:Statement ;
up:attribution _:843444 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:843477 a rdf:Statement ;
up:attribution _:843445 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:843478 a rdf:Statement ;
up:attribution _:843446 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:843479 a rdf:Statement ;
up:attribution _:843447 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030956 .
_:843480 a rdf:Statement ;
up:attribution _:843448 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050567 .
_:843481 a rdf:Statement ;
up:attribution _:843449 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016884 .
_:843482 a rdf:Statement ;
up:attribution _:843450 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070681 .
_:843483 a rdf:Statement ;
up:attribution _:843451 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0032543 .
_:843484 a rdf:Statement ;
up:attribution _:843452 ;
rdf:subject ?case3 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:809 .
_:843485 a rdf:Statement ;
up:attribution _:843453 ;
rdf:subject ?case5 ;
rdf:predicate up:recommendedName ;
rdf:object ?name6 .
_:843486 a rdf:Statement ;
up:attribution _:843454 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:150 .
_:843487 a rdf:Statement ;
up:attribution _:843455 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:934 .
_:843488 a rdf:Statement ;
up:attribution _:843456 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009507 .
_:843489 a rdf:Statement ;
up:attribution _:843457 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:496 .
_:843490 a rdf:Statement ;
up:attribution _:843458 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005739 .
_:843491 a rdf:Statement ;
up:attribution _:843459 ;
rdf:subject ?case9 ;
rdf:predicate up:recommendedName ;
rdf:object ?name10 .
_:843492 a rdf:Statement ;
up:attribution _:843460 ;
rdf:subject ?case9 ;
rdf:predicate up:alternativeName ;
rdf:object ?name11 .
_:843493 a rdf:Statement ;
up:attribution _:843461 ;
rdf:subject ?case9 ;
rdf:predicate up:alternativeName ;
rdf:object ?name12 .
_:843494 a rdf:Statement ;
up:attribution _:843462 ;
rdf:subject ?case9 ;
rdf:predicate up:precursor ;
rdf:object "true"^^xsd:boolean .
_:843495 a rdf:Statement ;
up:attribution _:843463 ;
rdf:subject ?case13 ;
rdf:predicate up:recommendedName ;
rdf:object ?name14 .
_:843496 a rdf:Statement ;
up:attribution _:843464 ;
rdf:subject ?case13 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:994 .
_:843497 a rdf:Statement ;
up:attribution _:843465 ;
rdf:subject ?case13 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:934 .
_:843498 a rdf:Statement ;
up:attribution _:843466 ;
rdf:subject ?case13 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070111 .
_:843499 a rdf:Statement ;
up:attribution _:843467 ;
rdf:subject ?case17 ;
rdf:predicate up:recommendedName ;
rdf:object ?name18 .
_:843500 a rdf:Statement ;
up:attribution _:843468 ;
rdf:subject ?case17 ;
rdf:predicate up:alternativeName ;
rdf:object ?name19 .
_:843501 a rdf:Statement ;
up:attribution _:843469 ;
rdf:subject ?case17 ;
rdf:predicate up:alternativeName ;
rdf:object ?name20 .
_:843502 a rdf:Statement ;
up:attribution _:843470 ;
rdf:subject ?case21 ;
rdf:predicate up:recommendedName ;
rdf:object ?name22 .
_:843503 a rdf:Statement ;
up:source unirule:MF_03147 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:843504 a rdf:Statement ;
up:attribution _:843471 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:843505 a rdf:Statement ;
up:source unirule:MF_03147 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:843506 a rdf:Statement ;
up:attribution _:843472 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03147
#Rule MF_03147 Created by:? on:2012-08-22 Modified by:Edouard de Castro on:2024-09-03
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00121 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
} UNION {
?this rdfs:seeAlso signature:MF_00121 .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
} UNION {
?this up:encodedIn up:Cyanelle .
} UNION {
?this up:encodedIn up:Apicoplast .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
} UNION {
?this up:encodedIn up:Non-photosynthetic_plastid .
}
}
BIND(URI(CONCAT(STR(?this), '#MF_03147a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03147a2')) AS ?annotation2) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch39 faldo:location ?templateMotifSequenceMatchRegionO7587940 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO7587942 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO75879MF_0012135 .
?templateMotifSequenceMatchRegionO7587940 faldo:begin ?templateMotifSequenceMatchBeginO7587941 .
?templateMotifSequenceMatchBeginO7587941 faldo:position ?templateMotifSequenceMatchBeginPositionO7587936 ;
faldo:reference isoform:O75879-1 .
?templateMotifSequenceProfileAlignmentOperationO7587942 edam:has_input signature:MF_00121 ;
rdf:type edam:operation_0300 .
?targetMotifMatch43 faldo:location ?targetMotifMatchRegionMatch44 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0012146 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO75879MF_0012137 .
?targetMotifMatchRegionMatch44 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0012145 .
?targetMotifMatchRegionMatchBeginMF_0012145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0012138 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0012146 edam:has_input signature:MF_00121 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(1 AS ?thisPositionOn27) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO75879MF_0012135, 1, (STRLEN(?templateMotifCigarO75879MF_0012135) - STRLEN(REPLACE(?templateMotifCigarO75879MF_0012135, CONCAT('^(?:-*[^-]){', STR(((30 - ?templateMotifSequenceMatchBeginPositionO7587936) + 1)), '}'), '')))), '[a-z]', '')) AS ?step147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO75879MF_0012137, 1, (STRLEN(?targetMotifMatchCigarO75879MF_0012137) - STRLEN(REPLACE(?targetMotifMatchCigarO75879MF_0012137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO75879MF_0012137, 1, (STRLEN(?targetMotifMatchCigarO75879MF_0012137) - STRLEN(REPLACE(?targetMotifMatchCigarO75879MF_0012137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), '')))), '[^-]', ''))) AS ?step248) .
BIND(((?step248 + ?targetMotifMatchRegionMatchBeginPositionMF_0012138) - 1) AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse26) .
FILTER ((BOUND(?thisPositionOn27) && BOUND(?thisPositionOn28))) .
BIND(URI(CONCAT(STR(?this), '#MF_03147a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch54 faldo:location ?templateMotifSequenceMatchRegionO7587955 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO7587957 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO75879MF_0012150 .
?templateMotifSequenceMatchRegionO7587955 faldo:begin ?templateMotifSequenceMatchBeginO7587956 .
?templateMotifSequenceMatchBeginO7587956 faldo:position ?templateMotifSequenceMatchBeginPositionO7587951 ;
faldo:reference isoform:O75879-1 .
?templateMotifSequenceProfileAlignmentOperationO7587957 edam:has_input signature:MF_00121 ;
rdf:type edam:operation_0300 .
?targetMotifMatch58 faldo:location ?targetMotifMatchRegionMatch59 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0012161 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO75879MF_0012152 .
?targetMotifMatchRegionMatch59 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0012160 .
?targetMotifMatchRegionMatchBeginMF_0012160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0012153 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0012161 edam:has_input signature:MF_00121 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO75879MF_0012150, 1, (STRLEN(?templateMotifCigarO75879MF_0012150) - STRLEN(REPLACE(?templateMotifCigarO75879MF_0012150, CONCAT('^(?:-*[^-]){', STR(((31 - ?templateMotifSequenceMatchBeginPositionO7587951) + 1)), '}'), '')))), '[a-z]', '')) AS ?step162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO75879MF_0012152, 1, (STRLEN(?targetMotifMatchCigarO75879MF_0012152) - STRLEN(REPLACE(?targetMotifMatchCigarO75879MF_0012152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO75879MF_0012152, 1, (STRLEN(?targetMotifMatchCigarO75879MF_0012152) - STRLEN(REPLACE(?targetMotifMatchCigarO75879MF_0012152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), '')))), '[^-]', ''))) AS ?step263) .
BIND(((?step263 + ?targetMotifMatchRegionMatchBeginPositionMF_0012153) - 1) AS ?thisPositionOn33) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) .
FILTER ((BOUND(?thisPositionOn33) && BOUND(?thisPositionOn34))) .
BIND(URI(CONCAT(STR(?this), '#MF_03147a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(?this AS ?case3) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case4) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
BIND(?this AS ?case5) .
BIND(URI(CONCAT(STR(?this), '#MF_03147a6')) AS ?name6) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:147537 .
BIND(?this AS ?case7) .
}
OPTIONAL {
?this a up:Protein .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
}
})) .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
}
})) .
BIND(?this AS ?case9) .
BIND(URI(CONCAT(STR(?this), '#MF_03147a10')) AS ?name10) .
BIND(URI(CONCAT(STR(?this), '#MF_03147a11')) AS ?name11) .
BIND(URI(CONCAT(STR(?this), '#MF_03147a12')) AS ?name12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
}
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:33090 .
})) .
BIND(?this AS ?case13) .
BIND(URI(CONCAT(STR(?this), '#MF_03147a14')) AS ?name14) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
}
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:33090 .
})) .
BIND(?this AS ?case15) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon65 {taxon:147537 taxon:7742}
?thisOrganism rdfs:subClassOf+ ?supertaxon65 .
})) .
BIND(?this AS ?case16) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
}
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
BIND(?this AS ?case17) .
BIND(URI(CONCAT(STR(?this), '#MF_03147a18')) AS ?name18) .
BIND(URI(CONCAT(STR(?this), '#MF_03147a19')) AS ?name19) .
BIND(URI(CONCAT(STR(?this), '#MF_03147a20')) AS ?name20) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
}
})) .
FILTER (! (EXISTS {
VALUES ?supertaxon66 {taxon:7742 taxon:33090}
?thisOrganism rdfs:subClassOf+ ?supertaxon66 .
})) .
BIND(?this AS ?case21) .
BIND(URI(CONCAT(STR(?this), '#MF_03147a22')) AS ?name22) .
}
}
"xsd:string |
