| http://purl.uniprot.org/unirules/MF_04033#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:906351 up:source unirule:MF_04033 .
_:906352 up:source unirule:MF_04033 .
_:906353 up:source unirule:MF_04033 .
_:906354 up:source unirule:MF_04033 .
_:906355 up:source unirule:MF_04033 .
_:906356 up:source unirule:MF_04033 .
_:906357 up:source unirule:MF_04033 .
_:906358 up:source unirule:MF_04033 .
_:906359 up:source unirule:MF_04033 .
_:906360 up:source unirule:MF_04033 .
_:906361 up:source unirule:MF_04033 .
_:906362 up:source unirule:MF_04033 .
_:906363 up:source unirule:MF_04033 .
_:906364 up:source unirule:MF_04033 .
_:906365 up:source unirule:MF_04033 .
_:906366 up:source unirule:MF_04033 .
_:906367 up:source unirule:MF_04033 .
_:906368 up:source unirule:MF_04033 .
_:906369 up:source unirule:MF_04033 .
_:906370 up:source unirule:MF_04033 .
_:906371 up:source unirule:MF_04033 .
_:906372 up:source unirule:MF_04033 .
_:906373 up:source unirule:MF_04033 .
_:906374 up:source unirule:MF_04033 .
_:906375 up:source unirule:MF_04033 .
_:906376 up:source unirule:MF_04033 .
_:906377 up:source unirule:MF_04033 .
_:906378 up:source unirule:MF_04033 .
_:906379 up:source unirule:MF_04033 .
_:906380 up:source unirule:MF_04033 .
_:906381 up:source unirule:MF_04033 .
_:906382 up:source unirule:MF_04033 .
_:906383 up:source unirule:MF_04033 .
_:906384 up:source unirule:MF_04033 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0016020 ,
GO:0019031 ,
GO:0019064 ,
GO:0020002 ,
GO:0044175 ,
GO:0055036 ,
keyword:1032 ,
keyword:1039 ,
keyword:1043 ,
keyword:1133 ,
keyword:1160 ,
keyword:1162 ,
keyword:1168 ,
keyword:1169 ,
keyword:261 ,
keyword:325 ,
keyword:472 ,
keyword:730 ,
keyword:732 ,
keyword:812 ,
keyword:946 ;
up:precursor "true"^^xsd:boolean ;
up:recommendedName ?name0 .
?name0 up:fullName 'Envelope glycoprotein H' ;
up:shortName 'gH' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'gH' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'The heterodimer glycoprotein H-glycoprotein L is required for the fusion of viral and plasma membranes leading to virus entry into the host cell. Following initial binding to host receptor, membrane fusion is mediated by the fusion machinery composed of gB and the heterodimer gH/gL. May also be involved in the fusion between the virion envelope and the outer nuclear membrane during virion morphogenesis.' .
?annotation3 a up:Subunit_Annotation ;
rdfs:comment 'Interacts with glycoprotein L (gL); this interaction is necessary for the correct processing and cell surface expression of gH. The heterodimer gH/gL seems to interact with gB trimers during fusion.' .
?annotation4 a up:Subcellular_Location_Annotation ;
rdfs:comment 'During virion morphogenesis, this protein probably accumulates in the endosomes and trans-Golgi where secondary envelopment occurs. It is probably transported to the cell surface from where it is endocytosed and directed to the trans-Golgi network (TGN)' .
?annotation4li5 up:cellularComponent .
?annotation4li6 up:cellularComponent .
?annotation4li7 up:cellularComponent .
?annotation8 a up:PTM_Annotation ;
rdfs:comment 'N-glycosylated, O-glycosylated, and sialylated.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the herpesviridae glycoprotein H family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Virion surface' .
?pfsb12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Intravirion' .
?pfsb24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interaction with gL' .
?pfsb30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?sam34 up:classifiedWith keyword:732 .
?signal35 faldo:begin ?signalb36 ;
faldo:end ?signale37 .
?signalb36 faldo:position ?signalbp38 .
?signale37 faldo:position ?signalep39 .
?keyword40 up:range ?signal35 .
_:906385 a rdf:Statement ;
up:attribution _:906351 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:906386 a rdf:Statement ;
up:attribution _:906352 ;
rdf:subject ?this ;
rdf:predicate up:precursor ;
rdf:object "true"^^xsd:boolean .
_:906387 a rdf:Statement ;
up:attribution _:906353 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:906388 a rdf:Statement ;
up:attribution _:906354 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:906389 a rdf:Statement ;
up:attribution _:906355 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:906390 a rdf:Statement ;
up:attribution _:906356 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:906391 a rdf:Statement ;
up:attribution _:906357 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:906392 a rdf:Statement ;
up:attribution _:906358 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:906393 a rdf:Statement ;
up:attribution _:906359 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1169 .
_:906394 a rdf:Statement ;
up:attribution _:906360 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1168 .
_:906395 a rdf:Statement ;
up:attribution _:906361 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:325 .
_:906396 a rdf:Statement ;
up:attribution _:906362 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1032 .
_:906397 a rdf:Statement ;
up:attribution _:906363 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1039 .
_:906398 a rdf:Statement ;
up:attribution _:906364 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1043 .
_:906399 a rdf:Statement ;
up:attribution _:906365 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:906400 a rdf:Statement ;
up:attribution _:906366 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:730 .
_:906401 a rdf:Statement ;
up:attribution _:906367 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
_:906402 a rdf:Statement ;
up:attribution _:906368 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:906403 a rdf:Statement ;
up:attribution _:906369 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:906404 a rdf:Statement ;
up:attribution _:906370 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:261 .
_:906405 a rdf:Statement ;
up:attribution _:906371 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1162 .
_:906406 a rdf:Statement ;
up:attribution _:906372 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:906407 a rdf:Statement ;
up:attribution _:906373 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1160 .
_:906408 a rdf:Statement ;
up:attribution _:906374 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044175 .
_:906409 a rdf:Statement ;
up:attribution _:906375 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0020002 .
_:906410 a rdf:Statement ;
up:attribution _:906376 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016020 .
_:906411 a rdf:Statement ;
up:attribution _:906377 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019031 .
_:906412 a rdf:Statement ;
up:attribution _:906378 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0055036 .
_:906413 a rdf:Statement ;
up:attribution _:906379 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019064 .
_:906414 a rdf:Statement ;
up:source unirule:MF_04033 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:906415 a rdf:Statement ;
up:attribution _:906380 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:906416 a rdf:Statement ;
up:source unirule:MF_04033 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:906417 a rdf:Statement ;
up:attribution _:906381 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:906418 a rdf:Statement ;
up:source unirule:MF_04033 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:906419 a rdf:Statement ;
up:attribution _:906382 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:906420 a rdf:Statement ;
up:source unirule:MF_04033 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:906421 a rdf:Statement ;
up:attribution _:906383 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:906422 a rdf:Statement ;
up:attribution _:906384 ;
rdf:subject ?sam34 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04033
#Rule MF_04033 Created by:? on:2016-05-13 Modified by:Edouard de Castro on:2022-09-29
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04033 .
?thisOrganism rdfs:subClassOf+ taxon:10292 .
BIND(URI(CONCAT(STR(?this), '#MF_04033a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04033a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_04033a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04033a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04033a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_04033a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch45 faldo:location ?templateMotifSequenceMatchRegionP0647746 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0647748 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06477MF_0403341 .
?templateMotifSequenceMatchRegionP0647746 faldo:begin ?templateMotifSequenceMatchBeginP0647747 .
?templateMotifSequenceMatchBeginP0647747 faldo:position ?templateMotifSequenceMatchBeginPositionP0647742 ;
faldo:reference isoform:P06477-1 .
?templateMotifSequenceProfileAlignmentOperationP0647748 edam:has_input signature:MF_04033 ;
rdf:type edam:operation_0300 .
?targetMotifMatch49 faldo:location ?targetMotifMatchRegionMatch50 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0403352 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06477MF_0403343 .
?targetMotifMatchRegionMatch50 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0403351 .
?targetMotifMatchRegionMatchBeginMF_0403351 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0403344 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0403352 edam:has_input signature:MF_04033 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06477MF_0403341, 1, (STRLEN(?templateMotifCigarP06477MF_0403341) - STRLEN(REPLACE(?templateMotifCigarP06477MF_0403341, CONCAT('^(?:-*[^-]){', STR(((803 - ?templateMotifSequenceMatchBeginPositionP0647742) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06477MF_0403343, 1, (STRLEN(?targetMotifMatchCigarP06477MF_0403343) - STRLEN(REPLACE(?targetMotifMatchCigarP06477MF_0403343, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06477MF_0403343, 1, (STRLEN(?targetMotifMatchCigarP06477MF_0403343) - STRLEN(REPLACE(?targetMotifMatchCigarP06477MF_0403343, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0403344) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) .
FILTER ((BOUND(?thisPositionOn14) && BOUND(?thisPositionOn15))) .
BIND(URI(CONCAT(STR(?this), '#MF_04033a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch60 faldo:location ?templateMotifSequenceMatchRegionP0647761 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0647763 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06477MF_0403356 .
?templateMotifSequenceMatchRegionP0647761 faldo:begin ?templateMotifSequenceMatchBeginP0647762 .
?templateMotifSequenceMatchBeginP0647762 faldo:position ?templateMotifSequenceMatchBeginPositionP0647757 ;
faldo:reference isoform:P06477-1 .
?templateMotifSequenceProfileAlignmentOperationP0647763 edam:has_input signature:MF_04033 ;
rdf:type edam:operation_0300 .
?targetMotifMatch64 faldo:location ?targetMotifMatchRegionMatch65 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0403367 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06477MF_0403358 .
?targetMotifMatchRegionMatch65 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0403366 .
?targetMotifMatchRegionMatchBeginMF_0403366 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0403359 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0403367 edam:has_input signature:MF_04033 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06477MF_0403356, 1, (STRLEN(?templateMotifCigarP06477MF_0403356) - STRLEN(REPLACE(?templateMotifCigarP06477MF_0403356, CONCAT('^(?:-*[^-]){', STR(((804 - ?templateMotifSequenceMatchBeginPositionP0647757) + 1)), '}'), '')))), '[a-z]', '')) AS ?step168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06477MF_0403358, 1, (STRLEN(?targetMotifMatchCigarP06477MF_0403358) - STRLEN(REPLACE(?targetMotifMatchCigarP06477MF_0403358, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06477MF_0403358, 1, (STRLEN(?targetMotifMatchCigarP06477MF_0403358) - STRLEN(REPLACE(?targetMotifMatchCigarP06477MF_0403358, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), '')))), '[^-]', ''))) AS ?step269) .
BIND(((?step269 + ?targetMotifMatchRegionMatchBeginPositionMF_0403359) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06477MF_0403356, 1, (STRLEN(?templateMotifCigarP06477MF_0403356) - STRLEN(REPLACE(?templateMotifCigarP06477MF_0403356, CONCAT('^(?:-*[^-]){', STR(((824 - ?templateMotifSequenceMatchBeginPositionP0647757) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06477MF_0403358, 1, (STRLEN(?targetMotifMatchCigarP06477MF_0403358) - STRLEN(REPLACE(?targetMotifMatchCigarP06477MF_0403358, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06477MF_0403358, 1, (STRLEN(?targetMotifMatchCigarP06477MF_0403358) - STRLEN(REPLACE(?targetMotifMatchCigarP06477MF_0403358, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0403359) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER ((BOUND(?thisPositionOn20) && BOUND(?thisPositionOn21))) .
BIND(URI(CONCAT(STR(?this), '#MF_04033a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch77 faldo:location ?templateMotifSequenceMatchRegionP0647778 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0647780 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06477MF_0403373 .
?templateMotifSequenceMatchRegionP0647778 faldo:begin ?templateMotifSequenceMatchBeginP0647779 .
?templateMotifSequenceMatchBeginP0647779 faldo:position ?templateMotifSequenceMatchBeginPositionP0647774 ;
faldo:reference isoform:P06477-1 .
?templateMotifSequenceProfileAlignmentOperationP0647780 edam:has_input signature:MF_04033 ;
rdf:type edam:operation_0300 .
?targetMotifMatch81 faldo:location ?targetMotifMatchRegionMatch82 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0403384 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06477MF_0403375 .
?targetMotifMatchRegionMatch82 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0403383 .
?targetMotifMatchRegionMatchBeginMF_0403383 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0403376 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0403384 edam:has_input signature:MF_04033 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06477MF_0403373, 1, (STRLEN(?templateMotifCigarP06477MF_0403373) - STRLEN(REPLACE(?templateMotifCigarP06477MF_0403373, CONCAT('^(?:-*[^-]){', STR(((825 - ?templateMotifSequenceMatchBeginPositionP0647774) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06477MF_0403375, 1, (STRLEN(?targetMotifMatchCigarP06477MF_0403375) - STRLEN(REPLACE(?targetMotifMatchCigarP06477MF_0403375, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06477MF_0403375, 1, (STRLEN(?targetMotifMatchCigarP06477MF_0403375) - STRLEN(REPLACE(?targetMotifMatchCigarP06477MF_0403375, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0403376) - 1) AS ?thisPositionOn26) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) .
FILTER ((BOUND(?thisPositionOn26) && BOUND(?thisPositionOn27))) .
BIND(URI(CONCAT(STR(?this), '#MF_04033a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionP0647793 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0647795 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06477MF_0403388 .
?templateMotifSequenceMatchRegionP0647793 faldo:begin ?templateMotifSequenceMatchBeginP0647794 .
?templateMotifSequenceMatchBeginP0647794 faldo:position ?templateMotifSequenceMatchBeginPositionP0647789 ;
faldo:reference isoform:P06477-1 .
?templateMotifSequenceProfileAlignmentOperationP0647795 edam:has_input signature:MF_04033 ;
rdf:type edam:operation_0300 .
?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0403399 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06477MF_0403390 .
?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0403398 .
?targetMotifMatchRegionMatchBeginMF_0403398 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0403391 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0403399 edam:has_input signature:MF_04033 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06477MF_0403388, 1, (STRLEN(?templateMotifCigarP06477MF_0403388) - STRLEN(REPLACE(?templateMotifCigarP06477MF_0403388, CONCAT('^(?:-*[^-]){', STR(((259 - ?templateMotifSequenceMatchBeginPositionP0647789) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06477MF_0403390, 1, (STRLEN(?targetMotifMatchCigarP06477MF_0403390) - STRLEN(REPLACE(?targetMotifMatchCigarP06477MF_0403390, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06477MF_0403390, 1, (STRLEN(?targetMotifMatchCigarP06477MF_0403390) - STRLEN(REPLACE(?targetMotifMatchCigarP06477MF_0403390, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0403391) - 1) AS ?thisPositionOn32) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06477MF_0403388, 1, (STRLEN(?templateMotifCigarP06477MF_0403388) - STRLEN(REPLACE(?templateMotifCigarP06477MF_0403388, CONCAT('^(?:-*[^-]){', STR(((323 - ?templateMotifSequenceMatchBeginPositionP0647789) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06477MF_0403390, 1, (STRLEN(?targetMotifMatchCigarP06477MF_0403390) - STRLEN(REPLACE(?targetMotifMatchCigarP06477MF_0403390, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06477MF_0403390, 1, (STRLEN(?targetMotifMatchCigarP06477MF_0403390) - STRLEN(REPLACE(?targetMotifMatchCigarP06477MF_0403390, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0403391) - 1) AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) .
FILTER ((BOUND(?thisPositionOn32) && BOUND(?thisPositionOn33))) .
BIND(URI(CONCAT(STR(?this), '#MF_04033a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:annotation ?samsignal105 ;
up:sequence ?thisSequence .
?samsignal105 up:range ?samsignalr106 ;
rdf:type up:Signal_Peptide_Annotation .
?samsignalr106 faldo:begin ?samsignalb107 ;
faldo:end ?samsignale108 .
?samsignalb107 faldo:position ?samsignalbp109 ;
faldo:reference ?thisSequence .
?samsignale108 faldo:position ?samsignalep110 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam34) .
}
BIND(URI(CONCAT(STR(?this), '#MF_04033a40')) AS ?keyword40) .
}
"xsd:string |
