| http://purl.uniprot.org/unirules/MF_04089#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:945278 up:source unirule:MF_04089 .
_:945279 up:source unirule:MF_04089 .
_:945280 up:source unirule:MF_04089 .
_:945281 up:source unirule:MF_04089 .
_:945282 up:source unirule:MF_04089 .
_:945283 up:source unirule:MF_04089 .
_:945284 up:source unirule:MF_04089 .
_:945285 up:source unirule:MF_04089 .
_:945286 up:source unirule:MF_04089 .
_:945287 up:source unirule:MF_04089 .
_:945288 up:source unirule:MF_04089 .
_:945289 up:source unirule:MF_04089 .
_:945290 up:source unirule:MF_04089 .
_:945291 up:source unirule:MF_04089 .
_:945292 up:source unirule:MF_04089 .
_:945293 up:source unirule:MF_04089 .
_:945294 up:source unirule:MF_04089 .
_:945295 up:source unirule:MF_04089 .
_:945296 up:source unirule:MF_04089 .
_:945297 up:source unirule:MF_04089 .
_:945298 up:source unirule:MF_04089 .
_:945299 up:source unirule:MF_04089 .
_:945300 up:source unirule:MF_04089 .
_:945301 up:source unirule:MF_04089 .
_:945302 up:source unirule:MF_04089 .
_:945303 up:source unirule:MF_04089 .
_:945304 up:source unirule:MF_04089 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation5 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0000166 ,
GO:0003723 ,
GO:0016817 ,
GO:0019079 ,
GO:0030430 ,
GO:0046872 ,
keyword:1035 ,
keyword:378 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:67 ,
keyword:694 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.6.4.-' ;
up:fullName 'Non-structural protein 2' ;
up:shortName 'NSP2' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'NCVP3' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Non-structural RNA-binding protein 35' ;
up:shortName 'NS35' ;
rdf:type up:Structured_Name .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Participates in replication and packaging of the viral genome. Plays a crucial role, together with NSP5, in the formation of virus factories (viroplasms) which are large inclusions in the host cytoplasm where replication intermediates are assembled and viral RNA replication takes place. Displays ssRNA binding, NTPase, RNA triphosphatase (RTPase) and ATP-independent helix-unwinding activities. The unwinding activity may prepare and organize plus-strand RNAs for packaging and replication by removing interfering secondary structures. The RTPase activity plays a role in the removal of the gamma-phosphate from the rotavirus RNA minus strands of dsRNA genome segments. Participates in the selective exclusion of host proteins from stress granules (SG) and P bodies (PB). Participates also in the sequestration of these remodeled organelles in viral factories.' .
?annotation4 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Homooctamer. Interacts with VP1; this interaction is weak. Interacts with NSP5; this interaction leads to up-regulation of NSP5 phosphorylation and formation of viral factories. Interacts with host DCP1A, DCP1B, DDX6, EDC4 and EIF2S1/eIF2-alpha; these interactions are probably part of the sequestration of some host SGs and PBs proteins in viral factories.' .
?annotation6 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Found in spherical cytoplasmic structures, called viral factories, that appear early after infection and are the site of viral replication and packaging' .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the rotavirus NSP2 family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:30616 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:30616 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:30616 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:30616 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'RNA-binding' .
?pfsb39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'For NTPase and RTPase activities' .
?pfsb45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
_:945305 a rdf:Statement ;
up:attribution _:945278 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:945306 a rdf:Statement ;
up:attribution _:945279 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:945307 a rdf:Statement ;
up:attribution _:945280 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:945308 a rdf:Statement ;
up:attribution _:945281 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:945309 a rdf:Statement ;
up:attribution _:945282 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:945310 a rdf:Statement ;
up:attribution _:945283 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:945311 a rdf:Statement ;
up:attribution _:945284 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:945312 a rdf:Statement ;
up:attribution _:945285 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:945313 a rdf:Statement ;
up:attribution _:945286 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:945314 a rdf:Statement ;
up:attribution _:945287 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1035 .
_:945315 a rdf:Statement ;
up:attribution _:945288 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:945316 a rdf:Statement ;
up:attribution _:945289 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:945317 a rdf:Statement ;
up:attribution _:945290 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:945318 a rdf:Statement ;
up:attribution _:945291 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:945319 a rdf:Statement ;
up:attribution _:945292 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:945320 a rdf:Statement ;
up:attribution _:945293 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030430 .
_:945321 a rdf:Statement ;
up:attribution _:945294 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016817 .
_:945322 a rdf:Statement ;
up:attribution _:945295 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046872 .
_:945323 a rdf:Statement ;
up:attribution _:945296 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000166 .
_:945324 a rdf:Statement ;
up:attribution _:945297 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003723 .
_:945325 a rdf:Statement ;
up:attribution _:945298 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019079 .
_:945326 a rdf:Statement ;
up:source unirule:MF_04089 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:945327 a rdf:Statement ;
up:attribution _:945299 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:945328 a rdf:Statement ;
up:source unirule:MF_04089 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:945329 a rdf:Statement ;
up:attribution _:945300 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:945330 a rdf:Statement ;
up:source unirule:MF_04089 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:945331 a rdf:Statement ;
up:attribution _:945301 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:945332 a rdf:Statement ;
up:source unirule:MF_04089 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:945333 a rdf:Statement ;
up:attribution _:945302 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:945334 a rdf:Statement ;
up:source unirule:MF_04089 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:945335 a rdf:Statement ;
up:attribution _:945303 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:945336 a rdf:Statement ;
up:source unirule:MF_04089 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:945337 a rdf:Statement ;
up:attribution _:945304 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04089
#Rule MF_04089 Created by:? on:2018-02-09 Modified by:Chantal Hulo on:2023-08-29
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04089 .
?thisOrganism rdfs:subClassOf+ taxon:10912 .
BIND(URI(CONCAT(STR(?this), '#MF_04089a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04089a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04089a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_04089a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04089a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04089a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_04089a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_04089a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch53 faldo:location ?templateMotifSequenceMatchRegionQ0324354 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0324356 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ03243MF_0408949 .
?templateMotifSequenceMatchRegionQ0324354 faldo:begin ?templateMotifSequenceMatchBeginQ0324355 .
?templateMotifSequenceMatchBeginQ0324355 faldo:position ?templateMotifSequenceMatchBeginPositionQ0324350 ;
faldo:reference isoform:Q03243-1 .
?templateMotifSequenceProfileAlignmentOperationQ0324356 edam:has_input signature:MF_04089 ;
rdf:type edam:operation_0300 .
?targetMotifMatch57 faldo:location ?targetMotifMatchRegionMatch58 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0408960 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ03243MF_0408951 .
?targetMotifMatchRegionMatch58 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0408959 .
?targetMotifMatchRegionMatchBeginMF_0408959 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0408952 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0408960 edam:has_input signature:MF_04089 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ03243MF_0408949, 1, (STRLEN(?templateMotifCigarQ03243MF_0408949) - STRLEN(REPLACE(?templateMotifCigarQ03243MF_0408949, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionQ0324350) + 1)), '}'), '')))), '[a-z]', '')) AS ?step161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ03243MF_0408951, 1, (STRLEN(?targetMotifMatchCigarQ03243MF_0408951) - STRLEN(REPLACE(?targetMotifMatchCigarQ03243MF_0408951, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ03243MF_0408951, 1, (STRLEN(?targetMotifMatchCigarQ03243MF_0408951) - STRLEN(REPLACE(?targetMotifMatchCigarQ03243MF_0408951, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), '')))), '[^-]', ''))) AS ?step262) .
BIND(((?step262 + ?targetMotifMatchRegionMatchBeginPositionMF_0408952) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ03243MF_0408949, 1, (STRLEN(?templateMotifCigarQ03243MF_0408949) - STRLEN(REPLACE(?templateMotifCigarQ03243MF_0408949, CONCAT('^(?:-*[^-]){', STR(((109 - ?templateMotifSequenceMatchBeginPositionQ0324350) + 1)), '}'), '')))), '[a-z]', '')) AS ?step163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ03243MF_0408951, 1, (STRLEN(?targetMotifMatchCigarQ03243MF_0408951) - STRLEN(REPLACE(?targetMotifMatchCigarQ03243MF_0408951, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ03243MF_0408951, 1, (STRLEN(?targetMotifMatchCigarQ03243MF_0408951) - STRLEN(REPLACE(?targetMotifMatchCigarQ03243MF_0408951, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), '')))), '[^-]', ''))) AS ?step264) .
BIND(((?step264 + ?targetMotifMatchRegionMatchBeginPositionMF_0408952) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER (REGEX('[SDQ][VI][RLF]', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04089a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch70 faldo:location ?templateMotifSequenceMatchRegionQ0324371 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0324373 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ03243MF_0408966 .
?templateMotifSequenceMatchRegionQ0324371 faldo:begin ?templateMotifSequenceMatchBeginQ0324372 .
?templateMotifSequenceMatchBeginQ0324372 faldo:position ?templateMotifSequenceMatchBeginPositionQ0324367 ;
faldo:reference isoform:Q03243-1 .
?templateMotifSequenceProfileAlignmentOperationQ0324373 edam:has_input signature:MF_04089 ;
rdf:type edam:operation_0300 .
?targetMotifMatch74 faldo:location ?targetMotifMatchRegionMatch75 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0408977 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ03243MF_0408968 .
?targetMotifMatchRegionMatch75 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0408976 .
?targetMotifMatchRegionMatchBeginMF_0408976 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0408969 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0408977 edam:has_input signature:MF_04089 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ03243MF_0408966, 1, (STRLEN(?templateMotifCigarQ03243MF_0408966) - STRLEN(REPLACE(?templateMotifCigarQ03243MF_0408966, CONCAT('^(?:-*[^-]){', STR(((221 - ?templateMotifSequenceMatchBeginPositionQ0324367) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ03243MF_0408968, 1, (STRLEN(?targetMotifMatchCigarQ03243MF_0408968) - STRLEN(REPLACE(?targetMotifMatchCigarQ03243MF_0408968, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ03243MF_0408968, 1, (STRLEN(?targetMotifMatchCigarQ03243MF_0408968) - STRLEN(REPLACE(?targetMotifMatchCigarQ03243MF_0408968, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0408969) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ03243MF_0408966, 1, (STRLEN(?templateMotifCigarQ03243MF_0408966) - STRLEN(REPLACE(?templateMotifCigarQ03243MF_0408966, CONCAT('^(?:-*[^-]){', STR(((223 - ?templateMotifSequenceMatchBeginPositionQ0324367) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ03243MF_0408968, 1, (STRLEN(?targetMotifMatchCigarQ03243MF_0408968) - STRLEN(REPLACE(?targetMotifMatchCigarQ03243MF_0408968, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ03243MF_0408968, 1, (STRLEN(?targetMotifMatchCigarQ03243MF_0408968) - STRLEN(REPLACE(?targetMotifMatchCigarQ03243MF_0408968, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0408969) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER (REGEX('HG[KH]', SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04089a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionQ0324388 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0324390 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ03243MF_0408983 .
?templateMotifSequenceMatchRegionQ0324388 faldo:begin ?templateMotifSequenceMatchBeginQ0324389 .
?templateMotifSequenceMatchBeginQ0324389 faldo:position ?templateMotifSequenceMatchBeginPositionQ0324384 ;
faldo:reference isoform:Q03243-1 .
?templateMotifSequenceProfileAlignmentOperationQ0324390 edam:has_input signature:MF_04089 ;
rdf:type edam:operation_0300 .
?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0408994 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ03243MF_0408985 .
?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0408993 .
?targetMotifMatchRegionMatchBeginMF_0408993 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0408986 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0408994 edam:has_input signature:MF_04089 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ03243MF_0408983, 1, (STRLEN(?templateMotifCigarQ03243MF_0408983) - STRLEN(REPLACE(?templateMotifCigarQ03243MF_0408983, CONCAT('^(?:-*[^-]){', STR(((188 - ?templateMotifSequenceMatchBeginPositionQ0324384) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ03243MF_0408985, 1, (STRLEN(?targetMotifMatchCigarQ03243MF_0408985) - STRLEN(REPLACE(?targetMotifMatchCigarQ03243MF_0408985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ03243MF_0408985, 1, (STRLEN(?targetMotifMatchCigarQ03243MF_0408985) - STRLEN(REPLACE(?targetMotifMatchCigarQ03243MF_0408985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0408986) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_04089a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionQ03243103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ03243105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ03243MF_0408998 .
?templateMotifSequenceMatchRegionQ03243103 faldo:begin ?templateMotifSequenceMatchBeginQ03243104 .
?templateMotifSequenceMatchBeginQ03243104 faldo:position ?templateMotifSequenceMatchBeginPositionQ0324399 ;
faldo:reference isoform:Q03243-1 .
?templateMotifSequenceProfileAlignmentOperationQ03243105 edam:has_input signature:MF_04089 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04089109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ03243MF_04089100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04089108 .
?targetMotifMatchRegionMatchBeginMF_04089108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04089101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04089109 edam:has_input signature:MF_04089 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ03243MF_0408998, 1, (STRLEN(?templateMotifCigarQ03243MF_0408998) - STRLEN(REPLACE(?templateMotifCigarQ03243MF_0408998, CONCAT('^(?:-*[^-]){', STR(((227 - ?templateMotifSequenceMatchBeginPositionQ0324399) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ03243MF_04089100, 1, (STRLEN(?targetMotifMatchCigarQ03243MF_04089100) - STRLEN(REPLACE(?targetMotifMatchCigarQ03243MF_04089100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ03243MF_04089100, 1, (STRLEN(?targetMotifMatchCigarQ03243MF_04089100) - STRLEN(REPLACE(?targetMotifMatchCigarQ03243MF_04089100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_04089101) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_04089a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionP03537118 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03537120 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03537MF_04089113 .
?templateMotifSequenceMatchRegionP03537118 faldo:begin ?templateMotifSequenceMatchBeginP03537119 .
?templateMotifSequenceMatchBeginP03537119 faldo:position ?templateMotifSequenceMatchBeginPositionP03537114 ;
faldo:reference isoform:P03537-1 .
?templateMotifSequenceProfileAlignmentOperationP03537120 edam:has_input signature:MF_04089 ;
rdf:type edam:operation_0300 .
?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04089124 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03537MF_04089115 .
?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04089123 .
?targetMotifMatchRegionMatchBeginMF_04089123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04089116 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04089124 edam:has_input signature:MF_04089 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03537MF_04089113, 1, (STRLEN(?templateMotifCigarP03537MF_04089113) - STRLEN(REPLACE(?templateMotifCigarP03537MF_04089113, CONCAT('^(?:-*[^-]){', STR(((205 - ?templateMotifSequenceMatchBeginPositionP03537114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03537MF_04089115, 1, (STRLEN(?targetMotifMatchCigarP03537MF_04089115) - STRLEN(REPLACE(?targetMotifMatchCigarP03537MF_04089115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03537MF_04089115, 1, (STRLEN(?targetMotifMatchCigarP03537MF_04089115) - STRLEN(REPLACE(?targetMotifMatchCigarP03537MF_04089115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_04089116) - 1) AS ?thisPositionOn41) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03537MF_04089113, 1, (STRLEN(?templateMotifCigarP03537MF_04089113) - STRLEN(REPLACE(?templateMotifCigarP03537MF_04089113, CONCAT('^(?:-*[^-]){', STR(((241 - ?templateMotifSequenceMatchBeginPositionP03537114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03537MF_04089115, 1, (STRLEN(?targetMotifMatchCigarP03537MF_04089115) - STRLEN(REPLACE(?targetMotifMatchCigarP03537MF_04089115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03537MF_04089115, 1, (STRLEN(?targetMotifMatchCigarP03537MF_04089115) - STRLEN(REPLACE(?targetMotifMatchCigarP03537MF_04089115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) .
BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_04089116) - 1) AS ?thisPositionOn42) .
BIND(?this AS ?pfs2t129) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse40) .
FILTER ((BOUND(?thisPositionOn41) && BOUND(?thisPositionOn42))) .
BIND(URI(CONCAT(STR(?this), '#MF_04089a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionP03537135 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03537137 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03537MF_04089130 .
?templateMotifSequenceMatchRegionP03537135 faldo:begin ?templateMotifSequenceMatchBeginP03537136 .
?templateMotifSequenceMatchBeginP03537136 faldo:position ?templateMotifSequenceMatchBeginPositionP03537131 ;
faldo:reference isoform:P03537-1 .
?templateMotifSequenceProfileAlignmentOperationP03537137 edam:has_input signature:MF_04089 ;
rdf:type edam:operation_0300 .
?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04089141 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03537MF_04089132 .
?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04089140 .
?targetMotifMatchRegionMatchBeginMF_04089140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04089133 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04089141 edam:has_input signature:MF_04089 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03537MF_04089130, 1, (STRLEN(?templateMotifCigarP03537MF_04089130) - STRLEN(REPLACE(?templateMotifCigarP03537MF_04089130, CONCAT('^(?:-*[^-]){', STR(((225 - ?templateMotifSequenceMatchBeginPositionP03537131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03537MF_04089132, 1, (STRLEN(?targetMotifMatchCigarP03537MF_04089132) - STRLEN(REPLACE(?targetMotifMatchCigarP03537MF_04089132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03537MF_04089132, 1, (STRLEN(?targetMotifMatchCigarP03537MF_04089132) - STRLEN(REPLACE(?targetMotifMatchCigarP03537MF_04089132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) .
BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_04089133) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs2t144) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_04089a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
}
"xsd:string |
