| http://purl.uniprot.org/unirules/MF_04095#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:947915 up:source unirule:MF_04095 .
_:947916 up:source unirule:MF_04095 .
_:947917 up:source unirule:MF_04095 .
_:947918 up:source unirule:MF_04095 .
_:947919 up:source unirule:MF_04095 .
_:947920 up:source unirule:MF_04095 .
_:947921 up:source unirule:MF_04095 .
_:947922 up:source unirule:MF_04095 .
_:947923 up:source unirule:MF_04095 .
_:947924 up:source unirule:MF_04095 .
_:947925 up:source unirule:MF_04095 .
_:947926 up:source unirule:MF_04095 .
_:947927 up:source unirule:MF_04095 .
_:947928 up:source unirule:MF_04095 .
_:947929 up:source unirule:MF_04095 .
_:947930 up:source unirule:MF_04095 .
_:947931 up:source unirule:MF_04095 .
_:947932 up:source unirule:MF_04095 .
_:947933 up:source unirule:MF_04095 .
_:947934 up:source unirule:MF_04095 .
_:947935 up:source unirule:MF_04095 .
_:947936 up:source unirule:MF_04095 .
_:947937 up:source unirule:MF_04095 .
_:947938 up:source unirule:MF_04095 .
_:947939 up:source unirule:MF_04095 .
_:947940 up:source unirule:MF_04095 .
_:947941 up:source unirule:MF_04095 .
_:947942 up:source unirule:MF_04095 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation5 ,
?annotation9 ,
?annotation10 ,
?annotation11 ;
up:classifiedWith GO:0003723 ,
GO:0019013 ,
GO:0044172 ,
GO:0044177 ,
keyword:1040 ,
keyword:13 ,
keyword:543 ,
keyword:597 ,
keyword:687 ,
keyword:694 ,
keyword:804 ,
keyword:805 ,
keyword:946 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Nucleoprotein' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Nucleocapsid protein' ;
up:shortName 'NC' ,
'Protein N' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'N' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Packages the positive strand viral genome RNA into a helical ribonucleocapsid (RNP) and plays a fundamental role during virion assembly through its interactions with the viral genome and membrane protein M. Plays an important role in enhancing the efficiency of subgenomic viral RNA transcription as well as viral replication.' .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Homooligomer. Both monomeric and oligomeric forms interact with RNA. Interacts with protein M. Interacts with NSP3; this interaction serves to tether the genome to the newly translated replicase-transcriptase complex at a very early stage of infection.' .
?annotation5 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Located inside the virion, complexed with the viral RNA. Probably associates with ER-derived membranes where it participates in viral RNA synthesis and virus budding' .
?annotation5li6 up:cellularComponent .
?annotation5li7 up:cellularComponent .
?annotation5li8 up:cellularComponent .
?annotation9 a up:PTM_Annotation ;
rdfs:comment 'ADP-ribosylated. The ADP-ribosylation is retained in the virion during infection.' .
?annotation10 a up:PTM_Annotation ;
rdfs:comment 'Phosphorylated on serine and threonine residues.' .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the alphacoronavirus nucleocapsid protein family.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'RNA-binding' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Dimerization' .
?pfsb20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
_:947943 a rdf:Statement ;
up:attribution _:947915 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:947944 a rdf:Statement ;
up:attribution _:947916 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:947945 a rdf:Statement ;
up:attribution _:947917 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:947946 a rdf:Statement ;
up:attribution _:947918 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:947947 a rdf:Statement ;
up:attribution _:947919 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:947948 a rdf:Statement ;
up:attribution _:947920 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:947949 a rdf:Statement ;
up:attribution _:947921 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:947950 a rdf:Statement ;
up:attribution _:947922 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:947951 a rdf:Statement ;
up:attribution _:947923 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:947952 a rdf:Statement ;
up:attribution _:947924 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:13 .
_:947953 a rdf:Statement ;
up:attribution _:947925 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1040 .
_:947954 a rdf:Statement ;
up:attribution _:947926 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:947955 a rdf:Statement ;
up:attribution _:947927 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:687 .
_:947956 a rdf:Statement ;
up:attribution _:947928 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:947957 a rdf:Statement ;
up:attribution _:947929 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:804 .
_:947958 a rdf:Statement ;
up:attribution _:947930 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:805 .
_:947959 a rdf:Statement ;
up:attribution _:947931 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:543 .
_:947960 a rdf:Statement ;
up:attribution _:947932 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:947961 a rdf:Statement ;
up:attribution _:947933 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044172 .
_:947962 a rdf:Statement ;
up:attribution _:947934 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044177 .
_:947963 a rdf:Statement ;
up:attribution _:947935 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019013 .
_:947964 a rdf:Statement ;
up:attribution _:947936 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003723 .
_:947965 a rdf:Statement ;
up:source unirule:MF_04095 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:947966 a rdf:Statement ;
up:attribution _:947937 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:947967 a rdf:Statement ;
up:source unirule:MF_04095 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:947968 a rdf:Statement ;
up:attribution _:947938 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:947969 a rdf:Statement ;
up:source unirule:MF_04095 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:947970 a rdf:Statement ;
up:attribution _:947939 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:947971 a rdf:Statement ;
up:source unirule:MF_04095 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:947972 a rdf:Statement ;
up:attribution _:947940 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:947973 a rdf:Statement ;
up:source unirule:MF_04095 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:947974 a rdf:Statement ;
up:attribution _:947941 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:947975 a rdf:Statement ;
up:source unirule:MF_04095 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:947976 a rdf:Statement ;
up:attribution _:947942 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04095
#Rule MF_04095 Created by:? on:2018-03-19 Modified by:Edouard de Castro on:2019-11-20
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04095 .
?thisOrganism rdfs:subClassOf+ taxon:693995 .
BIND(URI(CONCAT(STR(?this), '#MF_04095a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04095a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04095a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04095a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04095a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_04095a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_04095a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_04095a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch52 faldo:location ?templateMotifSequenceMatchRegionP0413453 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0413455 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04134MF_0409548 .
?templateMotifSequenceMatchRegionP0413453 faldo:begin ?templateMotifSequenceMatchBeginP0413454 .
?templateMotifSequenceMatchBeginP0413454 faldo:position ?templateMotifSequenceMatchBeginPositionP0413449 ;
faldo:reference isoform:P04134-1 .
?templateMotifSequenceProfileAlignmentOperationP0413455 edam:has_input signature:MF_04095 ;
rdf:type edam:operation_0300 .
?targetMotifMatch56 faldo:location ?targetMotifMatchRegionMatch57 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0409559 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04134MF_0409550 .
?targetMotifMatchRegionMatch57 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0409558 .
?targetMotifMatchRegionMatchBeginMF_0409558 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0409551 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0409559 edam:has_input signature:MF_04095 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04134MF_0409548, 1, (STRLEN(?templateMotifCigarP04134MF_0409548) - STRLEN(REPLACE(?templateMotifCigarP04134MF_0409548, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionP0413449) + 1)), '}'), '')))), '[a-z]', '')) AS ?step160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04134MF_0409550, 1, (STRLEN(?targetMotifMatchCigarP04134MF_0409550) - STRLEN(REPLACE(?targetMotifMatchCigarP04134MF_0409550, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04134MF_0409550, 1, (STRLEN(?targetMotifMatchCigarP04134MF_0409550) - STRLEN(REPLACE(?targetMotifMatchCigarP04134MF_0409550, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), '')))), '[^-]', ''))) AS ?step261) .
BIND(((?step261 + ?targetMotifMatchRegionMatchBeginPositionMF_0409551) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04134MF_0409548, 1, (STRLEN(?templateMotifCigarP04134MF_0409548) - STRLEN(REPLACE(?templateMotifCigarP04134MF_0409548, CONCAT('^(?:-*[^-]){', STR(((159 - ?templateMotifSequenceMatchBeginPositionP0413449) + 1)), '}'), '')))), '[a-z]', '')) AS ?step162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04134MF_0409550, 1, (STRLEN(?targetMotifMatchCigarP04134MF_0409550) - STRLEN(REPLACE(?targetMotifMatchCigarP04134MF_0409550, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04134MF_0409550, 1, (STRLEN(?targetMotifMatchCigarP04134MF_0409550) - STRLEN(REPLACE(?targetMotifMatchCigarP04134MF_0409550, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), '')))), '[^-]', ''))) AS ?step263) .
BIND(((?step263 + ?targetMotifMatchRegionMatchBeginPositionMF_0409551) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((BOUND(?thisPositionOn16) && BOUND(?thisPositionOn17))) .
BIND(URI(CONCAT(STR(?this), '#MF_04095a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch69 faldo:location ?templateMotifSequenceMatchRegionP0413470 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0413472 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04134MF_0409565 .
?templateMotifSequenceMatchRegionP0413470 faldo:begin ?templateMotifSequenceMatchBeginP0413471 .
?templateMotifSequenceMatchBeginP0413471 faldo:position ?templateMotifSequenceMatchBeginPositionP0413466 ;
faldo:reference isoform:P04134-1 .
?templateMotifSequenceProfileAlignmentOperationP0413472 edam:has_input signature:MF_04095 ;
rdf:type edam:operation_0300 .
?targetMotifMatch73 faldo:location ?targetMotifMatchRegionMatch74 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0409576 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04134MF_0409567 .
?targetMotifMatchRegionMatch74 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0409575 .
?targetMotifMatchRegionMatchBeginMF_0409575 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0409568 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0409576 edam:has_input signature:MF_04095 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04134MF_0409565, 1, (STRLEN(?templateMotifCigarP04134MF_0409565) - STRLEN(REPLACE(?templateMotifCigarP04134MF_0409565, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionP0413466) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04134MF_0409567, 1, (STRLEN(?targetMotifMatchCigarP04134MF_0409567) - STRLEN(REPLACE(?targetMotifMatchCigarP04134MF_0409567, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04134MF_0409567, 1, (STRLEN(?targetMotifMatchCigarP04134MF_0409567) - STRLEN(REPLACE(?targetMotifMatchCigarP04134MF_0409567, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) .
BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0409568) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04134MF_0409565, 1, (STRLEN(?templateMotifCigarP04134MF_0409565) - STRLEN(REPLACE(?templateMotifCigarP04134MF_0409565, CONCAT('^(?:-*[^-]){', STR(((334 - ?templateMotifSequenceMatchBeginPositionP0413466) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04134MF_0409567, 1, (STRLEN(?targetMotifMatchCigarP04134MF_0409567) - STRLEN(REPLACE(?targetMotifMatchCigarP04134MF_0409567, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04134MF_0409567, 1, (STRLEN(?targetMotifMatchCigarP04134MF_0409567) - STRLEN(REPLACE(?targetMotifMatchCigarP04134MF_0409567, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) .
BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0409568) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) .
FILTER ((BOUND(?thisPositionOn22) && BOUND(?thisPositionOn23))) .
BIND(URI(CONCAT(STR(?this), '#MF_04095a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch86 faldo:location ?templateMotifSequenceMatchRegionP0413487 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0413489 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04134MF_0409582 .
?templateMotifSequenceMatchRegionP0413487 faldo:begin ?templateMotifSequenceMatchBeginP0413488 .
?templateMotifSequenceMatchBeginP0413488 faldo:position ?templateMotifSequenceMatchBeginPositionP0413483 ;
faldo:reference isoform:P04134-1 .
?templateMotifSequenceProfileAlignmentOperationP0413489 edam:has_input signature:MF_04095 ;
rdf:type edam:operation_0300 .
?targetMotifMatch90 faldo:location ?targetMotifMatchRegionMatch91 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0409593 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04134MF_0409584 .
?targetMotifMatchRegionMatch91 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0409592 .
?targetMotifMatchRegionMatchBeginMF_0409592 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0409585 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0409593 edam:has_input signature:MF_04095 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04134MF_0409582, 1, (STRLEN(?templateMotifCigarP04134MF_0409582) - STRLEN(REPLACE(?templateMotifCigarP04134MF_0409582, CONCAT('^(?:-*[^-]){', STR(((9 - ?templateMotifSequenceMatchBeginPositionP0413483) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04134MF_0409584, 1, (STRLEN(?targetMotifMatchCigarP04134MF_0409584) - STRLEN(REPLACE(?targetMotifMatchCigarP04134MF_0409584, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04134MF_0409584, 1, (STRLEN(?targetMotifMatchCigarP04134MF_0409584) - STRLEN(REPLACE(?targetMotifMatchCigarP04134MF_0409584, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) .
BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0409585) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04095a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch101 faldo:location ?templateMotifSequenceMatchRegionP04134102 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04134104 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04134MF_0409597 .
?templateMotifSequenceMatchRegionP04134102 faldo:begin ?templateMotifSequenceMatchBeginP04134103 .
?templateMotifSequenceMatchBeginP04134103 faldo:position ?templateMotifSequenceMatchBeginPositionP0413498 ;
faldo:reference isoform:P04134-1 .
?templateMotifSequenceProfileAlignmentOperationP04134104 edam:has_input signature:MF_04095 ;
rdf:type edam:operation_0300 .
?targetMotifMatch105 faldo:location ?targetMotifMatchRegionMatch106 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04095108 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04134MF_0409599 .
?targetMotifMatchRegionMatch106 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04095107 .
?targetMotifMatchRegionMatchBeginMF_04095107 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04095100 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04095108 edam:has_input signature:MF_04095 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04134MF_0409597, 1, (STRLEN(?templateMotifCigarP04134MF_0409597) - STRLEN(REPLACE(?templateMotifCigarP04134MF_0409597, CONCAT('^(?:-*[^-]){', STR(((156 - ?templateMotifSequenceMatchBeginPositionP0413498) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04134MF_0409599, 1, (STRLEN(?targetMotifMatchCigarP04134MF_0409599) - STRLEN(REPLACE(?targetMotifMatchCigarP04134MF_0409599, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04134MF_0409599, 1, (STRLEN(?targetMotifMatchCigarP04134MF_0409599) - STRLEN(REPLACE(?targetMotifMatchCigarP04134MF_0409599, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) .
BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_04095100) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04095a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch116 faldo:location ?templateMotifSequenceMatchRegionP04134117 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04134119 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04134MF_04095112 .
?templateMotifSequenceMatchRegionP04134117 faldo:begin ?templateMotifSequenceMatchBeginP04134118 .
?templateMotifSequenceMatchBeginP04134118 faldo:position ?templateMotifSequenceMatchBeginPositionP04134113 ;
faldo:reference isoform:P04134-1 .
?templateMotifSequenceProfileAlignmentOperationP04134119 edam:has_input signature:MF_04095 ;
rdf:type edam:operation_0300 .
?targetMotifMatch120 faldo:location ?targetMotifMatchRegionMatch121 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04095123 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04134MF_04095114 .
?targetMotifMatchRegionMatch121 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04095122 .
?targetMotifMatchRegionMatchBeginMF_04095122 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04095115 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04095123 edam:has_input signature:MF_04095 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04134MF_04095112, 1, (STRLEN(?templateMotifCigarP04134MF_04095112) - STRLEN(REPLACE(?templateMotifCigarP04134MF_04095112, CONCAT('^(?:-*[^-]){', STR(((254 - ?templateMotifSequenceMatchBeginPositionP04134113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04134MF_04095114, 1, (STRLEN(?targetMotifMatchCigarP04134MF_04095114) - STRLEN(REPLACE(?targetMotifMatchCigarP04134MF_04095114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04134MF_04095114, 1, (STRLEN(?targetMotifMatchCigarP04134MF_04095114) - STRLEN(REPLACE(?targetMotifMatchCigarP04134MF_04095114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) .
BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_04095115) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04095a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionP04134132 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04134134 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04134MF_04095127 .
?templateMotifSequenceMatchRegionP04134132 faldo:begin ?templateMotifSequenceMatchBeginP04134133 .
?templateMotifSequenceMatchBeginP04134133 faldo:position ?templateMotifSequenceMatchBeginPositionP04134128 ;
faldo:reference isoform:P04134-1 .
?templateMotifSequenceProfileAlignmentOperationP04134134 edam:has_input signature:MF_04095 ;
rdf:type edam:operation_0300 .
?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04095138 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04134MF_04095129 .
?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04095137 .
?targetMotifMatchRegionMatchBeginMF_04095137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04095130 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04095138 edam:has_input signature:MF_04095 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04134MF_04095127, 1, (STRLEN(?templateMotifCigarP04134MF_04095127) - STRLEN(REPLACE(?templateMotifCigarP04134MF_04095127, CONCAT('^(?:-*[^-]){', STR(((256 - ?templateMotifSequenceMatchBeginPositionP04134128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04134MF_04095129, 1, (STRLEN(?targetMotifMatchCigarP04134MF_04095129) - STRLEN(REPLACE(?targetMotifMatchCigarP04134MF_04095129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04134MF_04095129, 1, (STRLEN(?targetMotifMatchCigarP04134MF_04095129) - STRLEN(REPLACE(?targetMotifMatchCigarP04134MF_04095129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) .
BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_04095130) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t141) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04095a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
}
"xsd:string |
