| http://purl.uniprot.org/unirules/MF_04124#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:960725 up:source unirule:MF_04124 .
_:960726 up:ecName '2.7.7.50' ;
up:fullName 'mRNA guanylyltransferase' ;
rdf:type up:Structured_Name .
_:960727 up:source unirule:MF_04124 .
_:960728 up:ecName '2.1.1.56' ;
up:fullName 'mRNA (guanine-N(7))-methyltransferase' ;
rdf:type up:Structured_Name .
_:960729 up:source unirule:MF_04124 .
_:960730 up:source unirule:MF_04124 .
_:960731 up:source unirule:MF_04124 .
_:960732 up:source unirule:MF_04124 .
_:960733 up:source unirule:MF_04124 .
_:960734 up:source unirule:MF_04124 .
_:960735 up:source unirule:MF_04124 .
_:960736 up:source unirule:MF_04124 .
_:960737 up:source unirule:MF_04124 .
_:960738 up:source unirule:MF_04124 .
_:960739 up:source unirule:MF_04124 .
_:960740 up:source unirule:MF_04124 .
_:960741 up:source unirule:MF_04124 .
_:960742 up:source unirule:MF_04124 .
_:960743 up:source unirule:MF_04124 .
_:960744 up:source unirule:MF_04124 .
_:960745 up:source unirule:MF_04124 .
_:960746 up:source unirule:MF_04124 .
_:960747 up:source unirule:MF_04124 .
_:960748 up:source unirule:MF_04124 .
_:960749 up:source unirule:MF_04124 .
_:960750 up:source unirule:MF_04124 .
_:960751 up:source unirule:MF_04124 .
_:960752 up:source unirule:MF_04124 .
_:960753 up:source unirule:MF_04124 .
_:960754 up:source unirule:MF_04124 .
_:960755 up:source unirule:MF_04124 .
_:960756 up:source unirule:MF_04124 .
_:960757 up:source unirule:MF_04124 .
_:960758 up:source unirule:MF_04124 .
?this up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation11 ;
up:classifiedWith GO:0003723 ,
GO:0004482 ,
GO:0004484 ,
GO:0005525 ,
GO:0016032 ,
GO:0019013 ,
keyword:342 ,
keyword:489 ,
keyword:506 ,
keyword:507 ,
keyword:511 ,
keyword:547 ,
keyword:548 ,
keyword:694 ,
keyword:808 ,
keyword:899 ,
keyword:945 ,
keyword:946 ,
keyword:949 ;
up:domain ?namedpart1 ,
?namedpart2 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Protein VP3' ;
rdf:type up:Structured_Name .
?namedpart1 up:recommendedName _:960726 .
?namedpart2 up:recommendedName _:960728 .
?annotation3 a up:Function_Annotation ;
rdfs:comment "Multifunctional enzyme involved in mRNA capping. Catalyzes the formation of the 5' cap structure on the viral plus-strand transcripts. Specifically binds to GTP and displays guanylyltransferase and methyltransferase activities. Has affinity for ssRNA but not for dsRNA. Capping activity is non-specific and caps RNAs that initiate with either a G or an A residue. Together with VP1 polymerase, forms a VP1-VP3 complex positioned near the channels situated at each of the five-fold vertices of the core. Following infection, the outermost layer of the virus is lost, leaving a double-layered particle (DLP) made up of the core and VP6 shell. VP1 then catalyzes the transcription of fully conservative plus-strand genomic RNAs that are capped by VP3 and extruded through the DLP's channels into the cytoplasm where they function as mRNAs for translation of viral proteins. DLPs probably have an RNA triphosphatase activity as well, whereas open cores do not." .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Interacts with VP1. Interacts with VP2.' .
?annotation9 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Attached inside the inner capsid as a minor component. There are about 11 to 12 copies per virion' .
?annotation9li10 up:cellularComponent .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the rotavirus VP3 family.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'N7-methyltransferase activity' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
rdf:type up:Region_Annotation ;
rdfs:comment "2'-O-methyltransferase activity" .
?pfsb20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'N7-methyltransferase activity' .
?pfsb26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'GTase/RTPase activity' .
?pfsb32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
_:960759 a rdf:Statement ;
up:attribution _:960725 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:960760 a rdf:Statement ;
up:attribution _:960727 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart1 .
_:960761 a rdf:Statement ;
up:attribution _:960729 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart2 .
_:960762 a rdf:Statement ;
up:attribution _:960730 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:960763 a rdf:Statement ;
up:attribution _:960731 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:960764 a rdf:Statement ;
up:attribution _:960732 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:960765 a rdf:Statement ;
up:attribution _:960733 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:960766 a rdf:Statement ;
up:attribution _:960734 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:960767 a rdf:Statement ;
up:attribution _:960735 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:960768 a rdf:Statement ;
up:attribution _:960736 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:342 .
_:960769 a rdf:Statement ;
up:attribution _:960737 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:945 .
_:960770 a rdf:Statement ;
up:attribution _:960738 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:960771 a rdf:Statement ;
up:attribution _:960739 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:506 .
_:960772 a rdf:Statement ;
up:attribution _:960740 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:507 .
_:960773 a rdf:Statement ;
up:attribution _:960741 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:511 .
_:960774 a rdf:Statement ;
up:attribution _:960742 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:960775 a rdf:Statement ;
up:attribution _:960743 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:548 .
_:960776 a rdf:Statement ;
up:attribution _:960744 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:960777 a rdf:Statement ;
up:attribution _:960745 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:960778 a rdf:Statement ;
up:attribution _:960746 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:960779 a rdf:Statement ;
up:attribution _:960747 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:899 .
_:960780 a rdf:Statement ;
up:attribution _:960748 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:960781 a rdf:Statement ;
up:attribution _:960749 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019013 .
_:960782 a rdf:Statement ;
up:attribution _:960750 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005525 .
_:960783 a rdf:Statement ;
up:attribution _:960751 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004482 .
_:960784 a rdf:Statement ;
up:attribution _:960752 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004484 .
_:960785 a rdf:Statement ;
up:attribution _:960753 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003723 .
_:960786 a rdf:Statement ;
up:attribution _:960754 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016032 .
_:960787 a rdf:Statement ;
up:source unirule:MF_04124 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:960788 a rdf:Statement ;
up:attribution _:960755 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:960789 a rdf:Statement ;
up:source unirule:MF_04124 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:960790 a rdf:Statement ;
up:attribution _:960756 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:960791 a rdf:Statement ;
up:source unirule:MF_04124 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:960792 a rdf:Statement ;
up:attribution _:960757 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:960793 a rdf:Statement ;
up:source unirule:MF_04124 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:960794 a rdf:Statement ;
up:attribution _:960758 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04124
#Rule MF_04124 Created by:? on:2018-03-28 Modified by:Elisabeth Coudert on:2024-01-30
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04124 .
?thisOrganism rdfs:subClassOf+ taxon:10912 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_04128 .
})) .
BIND(URI(CONCAT(STR(?this), '#MF_04124a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04124a1')) AS ?namedpart1) .
BIND(URI(CONCAT(STR(?this), '#MF_04124a2')) AS ?namedpart2) .
BIND(URI(CONCAT(STR(?this), '#MF_04124a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04124a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04124a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_04124a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_04124a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_04124a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch40 faldo:location ?templateMotifSequenceMatchRegionA2T3S541 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2T3S543 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2T3S5MF_0412436 .
?templateMotifSequenceMatchRegionA2T3S541 faldo:begin ?templateMotifSequenceMatchBeginA2T3S542 .
?templateMotifSequenceMatchBeginA2T3S542 faldo:position ?templateMotifSequenceMatchBeginPositionA2T3S537 ;
faldo:reference isoform:A2T3S5-1 .
?templateMotifSequenceProfileAlignmentOperationA2T3S543 edam:has_input signature:MF_04124 ;
rdf:type edam:operation_0300 .
?targetMotifMatch44 faldo:location ?targetMotifMatchRegionMatch45 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0412447 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2T3S5MF_0412438 .
?targetMotifMatchRegionMatch45 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0412446 .
?targetMotifMatchRegionMatchBeginMF_0412446 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0412439 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0412447 edam:has_input signature:MF_04124 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3S5MF_0412436, 1, (STRLEN(?templateMotifCigarA2T3S5MF_0412436) - STRLEN(REPLACE(?templateMotifCigarA2T3S5MF_0412436, CONCAT('^(?:-*[^-]){', STR(((171 - ?templateMotifSequenceMatchBeginPositionA2T3S537) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3S5MF_0412438, 1, (STRLEN(?targetMotifMatchCigarA2T3S5MF_0412438) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3S5MF_0412438, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3S5MF_0412438, 1, (STRLEN(?targetMotifMatchCigarA2T3S5MF_0412438) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3S5MF_0412438, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) .
BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0412439) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3S5MF_0412436, 1, (STRLEN(?templateMotifCigarA2T3S5MF_0412436) - STRLEN(REPLACE(?templateMotifCigarA2T3S5MF_0412436, CONCAT('^(?:-*[^-]){', STR(((245 - ?templateMotifSequenceMatchBeginPositionA2T3S537) + 1)), '}'), '')))), '[a-z]', '')) AS ?step150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3S5MF_0412438, 1, (STRLEN(?targetMotifMatchCigarA2T3S5MF_0412438) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3S5MF_0412438, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3S5MF_0412438, 1, (STRLEN(?targetMotifMatchCigarA2T3S5MF_0412438) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3S5MF_0412438, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), '')))), '[^-]', ''))) AS ?step251) .
BIND(((?step251 + ?targetMotifMatchRegionMatchBeginPositionMF_0412439) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((BOUND(?thisPositionOn16) && BOUND(?thisPositionOn17))) .
BIND(URI(CONCAT(STR(?this), '#MF_04124a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch57 faldo:location ?templateMotifSequenceMatchRegionA2T3S558 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2T3S560 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2T3S5MF_0412453 .
?templateMotifSequenceMatchRegionA2T3S558 faldo:begin ?templateMotifSequenceMatchBeginA2T3S559 .
?templateMotifSequenceMatchBeginA2T3S559 faldo:position ?templateMotifSequenceMatchBeginPositionA2T3S554 ;
faldo:reference isoform:A2T3S5-1 .
?templateMotifSequenceProfileAlignmentOperationA2T3S560 edam:has_input signature:MF_04124 ;
rdf:type edam:operation_0300 .
?targetMotifMatch61 faldo:location ?targetMotifMatchRegionMatch62 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0412464 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2T3S5MF_0412455 .
?targetMotifMatchRegionMatch62 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0412463 .
?targetMotifMatchRegionMatchBeginMF_0412463 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0412456 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0412464 edam:has_input signature:MF_04124 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3S5MF_0412453, 1, (STRLEN(?templateMotifCigarA2T3S5MF_0412453) - STRLEN(REPLACE(?templateMotifCigarA2T3S5MF_0412453, CONCAT('^(?:-*[^-]){', STR(((246 - ?templateMotifSequenceMatchBeginPositionA2T3S554) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3S5MF_0412455, 1, (STRLEN(?targetMotifMatchCigarA2T3S5MF_0412455) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3S5MF_0412455, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3S5MF_0412455, 1, (STRLEN(?targetMotifMatchCigarA2T3S5MF_0412455) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3S5MF_0412455, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) .
BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0412456) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3S5MF_0412453, 1, (STRLEN(?templateMotifCigarA2T3S5MF_0412453) - STRLEN(REPLACE(?templateMotifCigarA2T3S5MF_0412453, CONCAT('^(?:-*[^-]){', STR(((428 - ?templateMotifSequenceMatchBeginPositionA2T3S554) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3S5MF_0412455, 1, (STRLEN(?targetMotifMatchCigarA2T3S5MF_0412455) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3S5MF_0412455, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3S5MF_0412455, 1, (STRLEN(?targetMotifMatchCigarA2T3S5MF_0412455) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3S5MF_0412455, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) .
BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0412456) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) .
FILTER ((BOUND(?thisPositionOn22) && BOUND(?thisPositionOn23))) .
BIND(URI(CONCAT(STR(?this), '#MF_04124a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch74 faldo:location ?templateMotifSequenceMatchRegionA2T3S575 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2T3S577 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2T3S5MF_0412470 .
?templateMotifSequenceMatchRegionA2T3S575 faldo:begin ?templateMotifSequenceMatchBeginA2T3S576 .
?templateMotifSequenceMatchBeginA2T3S576 faldo:position ?templateMotifSequenceMatchBeginPositionA2T3S571 ;
faldo:reference isoform:A2T3S5-1 .
?templateMotifSequenceProfileAlignmentOperationA2T3S577 edam:has_input signature:MF_04124 ;
rdf:type edam:operation_0300 .
?targetMotifMatch78 faldo:location ?targetMotifMatchRegionMatch79 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0412481 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2T3S5MF_0412472 .
?targetMotifMatchRegionMatch79 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0412480 .
?targetMotifMatchRegionMatchBeginMF_0412480 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0412473 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0412481 edam:has_input signature:MF_04124 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3S5MF_0412470, 1, (STRLEN(?templateMotifCigarA2T3S5MF_0412470) - STRLEN(REPLACE(?templateMotifCigarA2T3S5MF_0412470, CONCAT('^(?:-*[^-]){', STR(((429 - ?templateMotifSequenceMatchBeginPositionA2T3S571) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3S5MF_0412472, 1, (STRLEN(?targetMotifMatchCigarA2T3S5MF_0412472) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3S5MF_0412472, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3S5MF_0412472, 1, (STRLEN(?targetMotifMatchCigarA2T3S5MF_0412472) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3S5MF_0412472, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) .
BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0412473) - 1) AS ?thisPositionOn28) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3S5MF_0412470, 1, (STRLEN(?templateMotifCigarA2T3S5MF_0412470) - STRLEN(REPLACE(?templateMotifCigarA2T3S5MF_0412470, CONCAT('^(?:-*[^-]){', STR(((555 - ?templateMotifSequenceMatchBeginPositionA2T3S571) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3S5MF_0412472, 1, (STRLEN(?targetMotifMatchCigarA2T3S5MF_0412472) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3S5MF_0412472, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3S5MF_0412472, 1, (STRLEN(?targetMotifMatchCigarA2T3S5MF_0412472) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3S5MF_0412472, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) .
BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0412473) - 1) AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) .
FILTER ((BOUND(?thisPositionOn28) && BOUND(?thisPositionOn29))) .
BIND(URI(CONCAT(STR(?this), '#MF_04124a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch91 faldo:location ?templateMotifSequenceMatchRegionA2T3S592 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2T3S594 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2T3S5MF_0412487 .
?templateMotifSequenceMatchRegionA2T3S592 faldo:begin ?templateMotifSequenceMatchBeginA2T3S593 .
?templateMotifSequenceMatchBeginA2T3S593 faldo:position ?templateMotifSequenceMatchBeginPositionA2T3S588 ;
faldo:reference isoform:A2T3S5-1 .
?templateMotifSequenceProfileAlignmentOperationA2T3S594 edam:has_input signature:MF_04124 ;
rdf:type edam:operation_0300 .
?targetMotifMatch95 faldo:location ?targetMotifMatchRegionMatch96 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0412498 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2T3S5MF_0412489 .
?targetMotifMatchRegionMatch96 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0412497 .
?targetMotifMatchRegionMatchBeginMF_0412497 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0412490 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0412498 edam:has_input signature:MF_04124 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3S5MF_0412487, 1, (STRLEN(?templateMotifCigarA2T3S5MF_0412487) - STRLEN(REPLACE(?templateMotifCigarA2T3S5MF_0412487, CONCAT('^(?:-*[^-]){', STR(((556 - ?templateMotifSequenceMatchBeginPositionA2T3S588) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3S5MF_0412489, 1, (STRLEN(?targetMotifMatchCigarA2T3S5MF_0412489) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3S5MF_0412489, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3S5MF_0412489, 1, (STRLEN(?targetMotifMatchCigarA2T3S5MF_0412489) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3S5MF_0412489, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) .
BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0412490) - 1) AS ?thisPositionOn34) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) .
FILTER ((BOUND(?thisPositionOn34) && BOUND(?thisPositionOn35))) .
BIND(URI(CONCAT(STR(?this), '#MF_04124a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
}
"xsd:string |
