| http://purl.uniprot.org/unirules/MF_00082#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:31655 up:source unirule:MF_00082 .
_:31656 up:source unirule:MF_00082 .
_:31657 up:source unirule:MF_00082 .
_:31658 up:source unirule:MF_00082 .
_:31659 up:source unirule:MF_00082 .
_:31660 up:source unirule:MF_00082 .
_:31661 up:source unirule:MF_00082 .
_:31662 up:source unirule:MF_00082 .
_:31663 up:source unirule:MF_00082 .
_:31664 up:source unirule:MF_00082 .
_:31665 up:source unirule:MF_00082 .
_:31666 up:source unirule:MF_00082 .
_:31667 up:source unirule:MF_00082 .
_:31668 up:source unirule:MF_00082 .
_:31669 up:source unirule:MF_00082 .
_:31670 up:source unirule:MF_00082 .
_:31671 up:source unirule:MF_00082 .
_:31672 up:source unirule:MF_00082 .
_:31673 up:source unirule:MF_00082 .
_:31674 up:source unirule:MF_00082 .
_:31675 up:source unirule:MF_00082 .
_:31676 up:source unirule:MF_00082 .
_:31677 up:source unirule:MF_00082 .
_:31678 up:source unirule:MF_00082 .
_:31679 up:source unirule:MF_00082 .
_:31680 up:source unirule:MF_00082 .
_:31681 up:source unirule:MF_00082 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0003991 ,
GO:0005524 ,
GO:0042450 ,
keyword:28 ,
keyword:418 ,
keyword:547 ,
keyword:55 ,
keyword:67 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.2.8' ;
up:fullName 'Acetylglutamate kinase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'N-acetyl-L-glutamate 5-phosphotransferase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'NAG kinase' ;
up:shortName 'NAGK' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'argB' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the ATP-dependent phosphorylation of N-acetyl-L-glutamate.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 2/4.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the acetylglutamate kinase family. ArgB subfamily.' .
?case9 up:classifiedWith GO:0009507 .
?case11 up:classifiedWith GO:0005737 ,
keyword:963 .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf ?molecule18 .
?molecule18 rdfs:label 'substrate' .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf ?molecule26 .
?molecule26 rdfs:label 'substrate' .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf ?molecule34 .
?molecule34 rdfs:label 'substrate' .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:30616 .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
up:ligand ?ligand60 ;
rdf:type up:Binding_Site_Annotation .
?pfsb58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand60 rdfs:subClassOf chebi:30616 .
_:31682 a rdf:Statement ;
up:attribution _:31655 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:31683 a rdf:Statement ;
up:attribution _:31656 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:31684 a rdf:Statement ;
up:attribution _:31657 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:31685 a rdf:Statement ;
up:attribution _:31658 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:31686 a rdf:Statement ;
up:attribution _:31659 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:31687 a rdf:Statement ;
up:attribution _:31660 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:31688 a rdf:Statement ;
up:attribution _:31661 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:31689 a rdf:Statement ;
up:attribution _:31662 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:31690 a rdf:Statement ;
up:attribution _:31663 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:31691 a rdf:Statement ;
up:attribution _:31664 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:55 .
_:31692 a rdf:Statement ;
up:attribution _:31665 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:31693 a rdf:Statement ;
up:attribution _:31666 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:31694 a rdf:Statement ;
up:attribution _:31667 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:31695 a rdf:Statement ;
up:attribution _:31668 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:31696 a rdf:Statement ;
up:attribution _:31669 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003991 .
_:31697 a rdf:Statement ;
up:attribution _:31670 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:31698 a rdf:Statement ;
up:attribution _:31671 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042450 .
_:31699 a rdf:Statement ;
up:attribution _:31672 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009507 .
_:31700 a rdf:Statement ;
up:attribution _:31673 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:31701 a rdf:Statement ;
up:attribution _:31674 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:31702 a rdf:Statement ;
up:source unirule:MF_00082 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:31703 a rdf:Statement ;
up:attribution _:31675 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:31704 a rdf:Statement ;
up:source unirule:MF_00082 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:31705 a rdf:Statement ;
up:attribution _:31676 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:31706 a rdf:Statement ;
up:source unirule:MF_00082 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:31707 a rdf:Statement ;
up:attribution _:31677 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:31708 a rdf:Statement ;
up:source unirule:MF_00082 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:31709 a rdf:Statement ;
up:attribution _:31678 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:31710 a rdf:Statement ;
up:source unirule:MF_00082 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:31711 a rdf:Statement ;
up:attribution _:31679 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:31712 a rdf:Statement ;
up:source unirule:MF_00082 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:31713 a rdf:Statement ;
up:attribution _:31680 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:31714 a rdf:Statement ;
up:source unirule:MF_00082 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:31715 a rdf:Statement ;
up:attribution _:31681 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00082
#Rule MF_00082 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-06-13
{
VALUES ?supertaxon63 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00082 .
?thisOrganism rdfs:subClassOf+ ?supertaxon63 .
} UNION {
?this rdfs:seeAlso signature:MF_00082 .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
} UNION {
?this up:encodedIn up:Cyanelle .
} UNION {
?this up:encodedIn up:Apicoplast .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
} UNION {
?this up:encodedIn up:Non-photosynthetic_plastid .
}
}
BIND(URI(CONCAT(STR(?this), '#MF_00082a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00082a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00082a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00082a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00082a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00082a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00082a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch68 faldo:location ?templateMotifSequenceMatchRegionP0A6C869 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6C871 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6C8MF_0008264 .
?templateMotifSequenceMatchRegionP0A6C869 faldo:begin ?templateMotifSequenceMatchBeginP0A6C870 .
?templateMotifSequenceMatchBeginP0A6C870 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6C865 ;
faldo:reference isoform:P0A6C8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6C871 edam:has_input signature:MF_00082 ;
rdf:type edam:operation_0300 .
?targetMotifMatch72 faldo:location ?targetMotifMatchRegionMatch73 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0008275 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6C8MF_0008266 .
?targetMotifMatchRegionMatch73 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0008274 .
?targetMotifMatchRegionMatchBeginMF_0008274 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0008267 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0008275 edam:has_input signature:MF_00082 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6C8MF_0008264, 1, (STRLEN(?templateMotifCigarP0A6C8MF_0008264) - STRLEN(REPLACE(?templateMotifCigarP0A6C8MF_0008264, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionP0A6C865) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6C8MF_0008266, 1, (STRLEN(?targetMotifMatchCigarP0A6C8MF_0008266) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6C8MF_0008266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6C8MF_0008266, 1, (STRLEN(?targetMotifMatchCigarP0A6C8MF_0008266) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6C8MF_0008266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) .
BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0008267) - 1) AS ?thisPositionOn19) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6C8MF_0008264, 1, (STRLEN(?templateMotifCigarP0A6C8MF_0008264) - STRLEN(REPLACE(?templateMotifCigarP0A6C8MF_0008264, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionP0A6C865) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6C8MF_0008266, 1, (STRLEN(?targetMotifMatchCigarP0A6C8MF_0008266) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6C8MF_0008266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6C8MF_0008266, 1, (STRLEN(?targetMotifMatchCigarP0A6C8MF_0008266) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6C8MF_0008266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0008267) - 1) AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse16) .
FILTER (REGEX('[GA][GSA]', SUBSTR(?thisSequenceValue, ?thisPositionOn19, (?thisPositionOn20 - ?thisPositionOn19)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00082a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch85 faldo:location ?templateMotifSequenceMatchRegionP0A6C886 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6C888 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6C8MF_0008281 .
?templateMotifSequenceMatchRegionP0A6C886 faldo:begin ?templateMotifSequenceMatchBeginP0A6C887 .
?templateMotifSequenceMatchBeginP0A6C887 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6C882 ;
faldo:reference isoform:P0A6C8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6C888 edam:has_input signature:MF_00082 ;
rdf:type edam:operation_0300 .
?targetMotifMatch89 faldo:location ?targetMotifMatchRegionMatch90 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0008292 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6C8MF_0008283 .
?targetMotifMatchRegionMatch90 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0008291 .
?targetMotifMatchRegionMatchBeginMF_0008291 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0008284 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0008292 edam:has_input signature:MF_00082 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6C8MF_0008281, 1, (STRLEN(?templateMotifCigarP0A6C8MF_0008281) - STRLEN(REPLACE(?templateMotifCigarP0A6C8MF_0008281, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionP0A6C882) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6C8MF_0008283, 1, (STRLEN(?targetMotifMatchCigarP0A6C8MF_0008283) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6C8MF_0008283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6C8MF_0008283, 1, (STRLEN(?targetMotifMatchCigarP0A6C8MF_0008283) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6C8MF_0008283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) .
BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0008284) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00082a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch100 faldo:location ?templateMotifSequenceMatchRegionP0A6C8101 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6C8103 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6C8MF_0008296 .
?templateMotifSequenceMatchRegionP0A6C8101 faldo:begin ?templateMotifSequenceMatchBeginP0A6C8102 .
?templateMotifSequenceMatchBeginP0A6C8102 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6C897 ;
faldo:reference isoform:P0A6C8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6C8103 edam:has_input signature:MF_00082 ;
rdf:type edam:operation_0300 .
?targetMotifMatch104 faldo:location ?targetMotifMatchRegionMatch105 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00082107 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6C8MF_0008298 .
?targetMotifMatchRegionMatch105 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00082106 .
?targetMotifMatchRegionMatchBeginMF_00082106 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0008299 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00082107 edam:has_input signature:MF_00082 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6C8MF_0008296, 1, (STRLEN(?templateMotifCigarP0A6C8MF_0008296) - STRLEN(REPLACE(?templateMotifCigarP0A6C8MF_0008296, CONCAT('^(?:-*[^-]){', STR(((158 - ?templateMotifSequenceMatchBeginPositionP0A6C897) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6C8MF_0008298, 1, (STRLEN(?targetMotifMatchCigarP0A6C8MF_0008298) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6C8MF_0008298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6C8MF_0008298, 1, (STRLEN(?targetMotifMatchCigarP0A6C8MF_0008298) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6C8MF_0008298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) .
BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0008299) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t110) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00082a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch115 faldo:location ?templateMotifSequenceMatchRegionP0A6C8116 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6C8118 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6C8MF_00082111 .
?templateMotifSequenceMatchRegionP0A6C8116 faldo:begin ?templateMotifSequenceMatchBeginP0A6C8117 .
?templateMotifSequenceMatchBeginP0A6C8117 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6C8112 ;
faldo:reference isoform:P0A6C8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6C8118 edam:has_input signature:MF_00082 ;
rdf:type edam:operation_0300 .
?targetMotifMatch119 faldo:location ?targetMotifMatchRegionMatch120 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00082122 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6C8MF_00082113 .
?targetMotifMatchRegionMatch120 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00082121 .
?targetMotifMatchRegionMatchBeginMF_00082121 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00082114 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00082122 edam:has_input signature:MF_00082 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6C8MF_00082111, 1, (STRLEN(?templateMotifCigarP0A6C8MF_00082111) - STRLEN(REPLACE(?templateMotifCigarP0A6C8MF_00082111, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionP0A6C8112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6C8MF_00082113, 1, (STRLEN(?targetMotifMatchCigarP0A6C8MF_00082113) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6C8MF_00082113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6C8MF_00082113, 1, (STRLEN(?targetMotifMatchCigarP0A6C8MF_00082113) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6C8MF_00082113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) .
BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_00082114) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00082a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch130 faldo:location ?templateMotifSequenceMatchRegionP0A6C8131 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6C8133 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6C8MF_00082126 .
?templateMotifSequenceMatchRegionP0A6C8131 faldo:begin ?templateMotifSequenceMatchBeginP0A6C8132 .
?templateMotifSequenceMatchBeginP0A6C8132 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6C8127 ;
faldo:reference isoform:P0A6C8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6C8133 edam:has_input signature:MF_00082 ;
rdf:type edam:operation_0300 .
?targetMotifMatch134 faldo:location ?targetMotifMatchRegionMatch135 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00082137 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6C8MF_00082128 .
?targetMotifMatchRegionMatch135 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00082136 .
?targetMotifMatchRegionMatchBeginMF_00082136 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00082129 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00082137 edam:has_input signature:MF_00082 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6C8MF_00082126, 1, (STRLEN(?templateMotifCigarP0A6C8MF_00082126) - STRLEN(REPLACE(?templateMotifCigarP0A6C8MF_00082126, CONCAT('^(?:-*[^-]){', STR(((217 - ?templateMotifSequenceMatchBeginPositionP0A6C8127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6C8MF_00082128, 1, (STRLEN(?targetMotifMatchCigarP0A6C8MF_00082128) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6C8MF_00082128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6C8MF_00082128, 1, (STRLEN(?targetMotifMatchCigarP0A6C8MF_00082128) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6C8MF_00082128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) .
BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_00082129) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t140) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00082a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch145 faldo:location ?templateMotifSequenceMatchRegionP0A6C8146 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6C8148 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6C8MF_00082141 .
?templateMotifSequenceMatchRegionP0A6C8146 faldo:begin ?templateMotifSequenceMatchBeginP0A6C8147 .
?templateMotifSequenceMatchBeginP0A6C8147 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6C8142 ;
faldo:reference isoform:P0A6C8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6C8148 edam:has_input signature:MF_00082 ;
rdf:type edam:operation_0300 .
?targetMotifMatch149 faldo:location ?targetMotifMatchRegionMatch150 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00082152 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6C8MF_00082143 .
?targetMotifMatchRegionMatch150 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00082151 .
?targetMotifMatchRegionMatchBeginMF_00082151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00082144 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00082152 edam:has_input signature:MF_00082 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6C8MF_00082141, 1, (STRLEN(?templateMotifCigarP0A6C8MF_00082141) - STRLEN(REPLACE(?templateMotifCigarP0A6C8MF_00082141, CONCAT('^(?:-*[^-]){', STR(((181 - ?templateMotifSequenceMatchBeginPositionP0A6C8142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6C8MF_00082143, 1, (STRLEN(?targetMotifMatchCigarP0A6C8MF_00082143) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6C8MF_00082143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6C8MF_00082143, 1, (STRLEN(?targetMotifMatchCigarP0A6C8MF_00082143) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6C8MF_00082143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) .
BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_00082144) - 1) AS ?thisPositionOn54) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6C8MF_00082141, 1, (STRLEN(?templateMotifCigarP0A6C8MF_00082141) - STRLEN(REPLACE(?templateMotifCigarP0A6C8MF_00082141, CONCAT('^(?:-*[^-]){', STR(((186 - ?templateMotifSequenceMatchBeginPositionP0A6C8142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6C8MF_00082143, 1, (STRLEN(?targetMotifMatchCigarP0A6C8MF_00082143) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6C8MF_00082143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6C8MF_00082143, 1, (STRLEN(?targetMotifMatchCigarP0A6C8MF_00082143) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6C8MF_00082143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) .
BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_00082144) - 1) AS ?thisPositionOn55) .
BIND(?this AS ?pfs2t157) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER (REGEX('D[VI]S[GS]IL', SUBSTR(?thisSequenceValue, ?thisPositionOn54, (?thisPositionOn55 - ?thisPositionOn54)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00082a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch162 faldo:location ?templateMotifSequenceMatchRegionP0A6C8163 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6C8165 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6C8MF_00082158 .
?templateMotifSequenceMatchRegionP0A6C8163 faldo:begin ?templateMotifSequenceMatchBeginP0A6C8164 .
?templateMotifSequenceMatchBeginP0A6C8164 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6C8159 ;
faldo:reference isoform:P0A6C8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6C8165 edam:has_input signature:MF_00082 ;
rdf:type edam:operation_0300 .
?targetMotifMatch166 faldo:location ?targetMotifMatchRegionMatch167 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00082169 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6C8MF_00082160 .
?targetMotifMatchRegionMatch167 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00082168 .
?targetMotifMatchRegionMatchBeginMF_00082168 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00082161 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00082169 edam:has_input signature:MF_00082 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6C8MF_00082158, 1, (STRLEN(?templateMotifCigarP0A6C8MF_00082158) - STRLEN(REPLACE(?templateMotifCigarP0A6C8MF_00082158, CONCAT('^(?:-*[^-]){', STR(((209 - ?templateMotifSequenceMatchBeginPositionP0A6C8159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6C8MF_00082160, 1, (STRLEN(?targetMotifMatchCigarP0A6C8MF_00082160) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6C8MF_00082160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6C8MF_00082160, 1, (STRLEN(?targetMotifMatchCigarP0A6C8MF_00082160) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6C8MF_00082160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), '')))), '[^-]', ''))) AS ?step2171) .
BIND(((?step2171 + ?targetMotifMatchRegionMatchBeginPositionMF_00082161) - 1) AS ?thisPositionOn61) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6C8MF_00082158, 1, (STRLEN(?templateMotifCigarP0A6C8MF_00082158) - STRLEN(REPLACE(?templateMotifCigarP0A6C8MF_00082158, CONCAT('^(?:-*[^-]){', STR(((211 - ?templateMotifSequenceMatchBeginPositionP0A6C8159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6C8MF_00082160, 1, (STRLEN(?targetMotifMatchCigarP0A6C8MF_00082160) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6C8MF_00082160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6C8MF_00082160, 1, (STRLEN(?targetMotifMatchCigarP0A6C8MF_00082160) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6C8MF_00082160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) .
BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_00082161) - 1) AS ?thisPositionOn62) .
BIND(?this AS ?pfs2t174) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, (?thisPositionOn62 - ?thisPositionOn61)) = 'IIT')) .
BIND(URI(CONCAT(STR(?this), '#MF_00082a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon175 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon175 .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
FILTER (! (EXISTS {
VALUES ?supertaxon176 {taxon:2 taxon:2157}
?thisOrganism rdfs:subClassOf+ ?supertaxon176 .
})) .
BIND(?this AS ?case12) .
}
}
"xsd:string |
