| http://purl.uniprot.org/unirules/MF_00103#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:40564 up:source unirule:MF_00103 .
_:40565 up:source unirule:MF_00103 .
_:40566 up:source unirule:MF_00103 .
_:40567 up:source unirule:MF_00103 .
_:40568 up:source unirule:MF_00103 .
_:40569 up:source unirule:MF_00103 .
_:40570 up:source unirule:MF_00103 .
_:40571 up:source unirule:MF_00103 .
_:40572 up:source unirule:MF_00103 .
_:40573 up:source unirule:MF_00103 .
_:40574 up:source unirule:MF_00103 .
_:40575 up:source unirule:MF_00103 .
_:40576 up:source unirule:MF_00103 .
_:40577 up:source unirule:MF_00103 .
_:40578 up:source unirule:MF_00103 .
_:40579 up:source unirule:MF_00103 .
_:40580 up:source unirule:MF_00103 .
_:40581 up:source unirule:MF_00103 .
_:40582 up:source unirule:MF_00103 .
_:40583 up:source unirule:MF_00103 .
_:40584 up:source unirule:MF_00103 .
_:40585 up:source unirule:MF_00103 .
_:40586 up:source unirule:MF_00103 .
_:40587 up:source unirule:MF_00103 .
_:40588 up:source unirule:MF_00103 .
_:40589 up:source unirule:MF_00103 .
_:40590 up:source unirule:MF_00103 .
_:40591 up:source unirule:MF_00103 .
_:40592 up:source unirule:MF_00103 .
_:40593 up:source unirule:MF_00103 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0003906 ,
GO:0006281 ,
GO:0008534 ,
keyword:227 ,
keyword:234 ,
keyword:238 ,
keyword:326 ,
keyword:378 ,
keyword:456 ,
keyword:511 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.2.2.23' ;
up:fullName 'Formamidopyrimidine-DNA glycosylase' ;
up:shortName 'Fapy-DNA glycosylase' ;
rdf:type up:Structured_Name .
?name1 up:ecName '4.2.99.18' ;
up:fullName 'DNA-(apurinic or apyrimidinic site) lyase MutM' ;
up:shortName 'AP lyase MutM' ;
rdf:type up:Structured_Name .
?gene2 skos:altLabel 'fpg' ;
skos:prefLabel 'mutM' .
?annotation3 a up:Function_Annotation ;
rdfs:comment "Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates." .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:cofactor chebi:29105 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 zinc ion per subunit.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the FPG family.' .
?case11 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 ,
keyword:863 .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Schiff-base intermediate with DNA' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor; for beta-elimination activity' .
?pfsb26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor; for delta-elimination activity' .
?pfsb32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:16991 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:16991 .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:16991 .
_:40594 a rdf:Statement ;
up:attribution _:40564 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:40595 a rdf:Statement ;
up:attribution _:40565 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:40596 a rdf:Statement ;
up:attribution _:40566 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:40597 a rdf:Statement ;
up:attribution _:40567 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:40598 a rdf:Statement ;
up:attribution _:40568 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:40599 a rdf:Statement ;
up:attribution _:40569 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:40600 a rdf:Statement ;
up:attribution _:40570 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:40601 a rdf:Statement ;
up:attribution _:40571 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:40602 a rdf:Statement ;
up:attribution _:40572 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:40603 a rdf:Statement ;
up:attribution _:40573 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:227 .
_:40604 a rdf:Statement ;
up:attribution _:40574 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:234 .
_:40605 a rdf:Statement ;
up:attribution _:40575 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:40606 a rdf:Statement ;
up:attribution _:40576 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:40607 a rdf:Statement ;
up:attribution _:40577 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:326 .
_:40608 a rdf:Statement ;
up:attribution _:40578 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:40609 a rdf:Statement ;
up:attribution _:40579 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:511 .
_:40610 a rdf:Statement ;
up:attribution _:40580 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003906 .
_:40611 a rdf:Statement ;
up:attribution _:40581 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008534 .
_:40612 a rdf:Statement ;
up:attribution _:40582 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006281 .
_:40613 a rdf:Statement ;
up:attribution _:40583 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:40614 a rdf:Statement ;
up:attribution _:40584 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:40615 a rdf:Statement ;
up:attribution _:40585 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:863 .
_:40616 a rdf:Statement ;
up:attribution _:40586 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:40617 a rdf:Statement ;
up:source unirule:MF_00103 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:40618 a rdf:Statement ;
up:attribution _:40587 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:40619 a rdf:Statement ;
up:source unirule:MF_00103 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:40620 a rdf:Statement ;
up:attribution _:40588 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:40621 a rdf:Statement ;
up:source unirule:MF_00103 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:40622 a rdf:Statement ;
up:attribution _:40589 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:40623 a rdf:Statement ;
up:source unirule:MF_00103 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:40624 a rdf:Statement ;
up:attribution _:40590 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:40625 a rdf:Statement ;
up:source unirule:MF_00103 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:40626 a rdf:Statement ;
up:attribution _:40591 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:40627 a rdf:Statement ;
up:source unirule:MF_00103 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:40628 a rdf:Statement ;
up:attribution _:40592 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:40629 a rdf:Statement ;
up:source unirule:MF_00103 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:40630 a rdf:Statement ;
up:attribution _:40593 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00103
#Rule MF_00103 Created by:? on:2005-02-28 Modified by:Elisabeth Coudert on:2024-01-30
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00103 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00103a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00103a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00103a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00103a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00103a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00103a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00103a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_00103a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch61 faldo:location ?templateMotifSequenceMatchRegionP0552362 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0552364 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP05523MF_0010357 .
?templateMotifSequenceMatchRegionP0552362 faldo:begin ?templateMotifSequenceMatchBeginP0552363 .
?templateMotifSequenceMatchBeginP0552363 faldo:position ?templateMotifSequenceMatchBeginPositionP0552358 ;
faldo:reference isoform:P05523-1 .
?templateMotifSequenceProfileAlignmentOperationP0552364 edam:has_input signature:MF_00103 ;
rdf:type edam:operation_0300 .
?targetMotifMatch65 faldo:location ?targetMotifMatchRegionMatch66 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0010368 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP05523MF_0010359 .
?targetMotifMatchRegionMatch66 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0010367 .
?targetMotifMatchRegionMatchBeginMF_0010367 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0010360 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0010368 edam:has_input signature:MF_00103 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05523MF_0010357, 1, (STRLEN(?templateMotifCigarP05523MF_0010357) - STRLEN(REPLACE(?templateMotifCigarP05523MF_0010357, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP0552358) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05523MF_0010359, 1, (STRLEN(?targetMotifMatchCigarP05523MF_0010359) - STRLEN(REPLACE(?targetMotifMatchCigarP05523MF_0010359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05523MF_0010359, 1, (STRLEN(?targetMotifMatchCigarP05523MF_0010359) - STRLEN(REPLACE(?targetMotifMatchCigarP05523MF_0010359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0010360) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'P')) .
BIND(URI(CONCAT(STR(?this), '#MF_00103a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch76 faldo:location ?templateMotifSequenceMatchRegionP0552377 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0552379 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP05523MF_0010372 .
?templateMotifSequenceMatchRegionP0552377 faldo:begin ?templateMotifSequenceMatchBeginP0552378 .
?templateMotifSequenceMatchBeginP0552378 faldo:position ?templateMotifSequenceMatchBeginPositionP0552373 ;
faldo:reference isoform:P05523-1 .
?templateMotifSequenceProfileAlignmentOperationP0552379 edam:has_input signature:MF_00103 ;
rdf:type edam:operation_0300 .
?targetMotifMatch80 faldo:location ?targetMotifMatchRegionMatch81 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0010383 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP05523MF_0010374 .
?targetMotifMatchRegionMatch81 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0010382 .
?targetMotifMatchRegionMatchBeginMF_0010382 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0010375 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0010383 edam:has_input signature:MF_00103 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05523MF_0010372, 1, (STRLEN(?templateMotifCigarP05523MF_0010372) - STRLEN(REPLACE(?templateMotifCigarP05523MF_0010372, CONCAT('^(?:-*[^-]){', STR(((3 - ?templateMotifSequenceMatchBeginPositionP0552373) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05523MF_0010374, 1, (STRLEN(?targetMotifMatchCigarP05523MF_0010374) - STRLEN(REPLACE(?targetMotifMatchCigarP05523MF_0010374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05523MF_0010374, 1, (STRLEN(?targetMotifMatchCigarP05523MF_0010374) - STRLEN(REPLACE(?targetMotifMatchCigarP05523MF_0010374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) .
BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0010375) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00103a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch91 faldo:location ?templateMotifSequenceMatchRegionP0552392 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0552394 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP05523MF_0010387 .
?templateMotifSequenceMatchRegionP0552392 faldo:begin ?templateMotifSequenceMatchBeginP0552393 .
?templateMotifSequenceMatchBeginP0552393 faldo:position ?templateMotifSequenceMatchBeginPositionP0552388 ;
faldo:reference isoform:P05523-1 .
?templateMotifSequenceProfileAlignmentOperationP0552394 edam:has_input signature:MF_00103 ;
rdf:type edam:operation_0300 .
?targetMotifMatch95 faldo:location ?targetMotifMatchRegionMatch96 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0010398 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP05523MF_0010389 .
?targetMotifMatchRegionMatch96 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0010397 .
?targetMotifMatchRegionMatchBeginMF_0010397 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0010390 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0010398 edam:has_input signature:MF_00103 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05523MF_0010387, 1, (STRLEN(?templateMotifCigarP05523MF_0010387) - STRLEN(REPLACE(?templateMotifCigarP05523MF_0010387, CONCAT('^(?:-*[^-]){', STR(((57 - ?templateMotifSequenceMatchBeginPositionP0552388) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05523MF_0010389, 1, (STRLEN(?targetMotifMatchCigarP05523MF_0010389) - STRLEN(REPLACE(?targetMotifMatchCigarP05523MF_0010389, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05523MF_0010389, 1, (STRLEN(?targetMotifMatchCigarP05523MF_0010389) - STRLEN(REPLACE(?targetMotifMatchCigarP05523MF_0010389, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) .
BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0010390) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00103a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionP05523107 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05523109 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP05523MF_00103102 .
?templateMotifSequenceMatchRegionP05523107 faldo:begin ?templateMotifSequenceMatchBeginP05523108 .
?templateMotifSequenceMatchBeginP05523108 faldo:position ?templateMotifSequenceMatchBeginPositionP05523103 ;
faldo:reference isoform:P05523-1 .
?templateMotifSequenceProfileAlignmentOperationP05523109 edam:has_input signature:MF_00103 ;
rdf:type edam:operation_0300 .
?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00103113 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP05523MF_00103104 .
?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00103112 .
?targetMotifMatchRegionMatchBeginMF_00103112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00103105 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00103113 edam:has_input signature:MF_00103 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05523MF_00103102, 1, (STRLEN(?templateMotifCigarP05523MF_00103102) - STRLEN(REPLACE(?templateMotifCigarP05523MF_00103102, CONCAT('^(?:-*[^-]){', STR(((259 - ?templateMotifSequenceMatchBeginPositionP05523103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05523MF_00103104, 1, (STRLEN(?targetMotifMatchCigarP05523MF_00103104) - STRLEN(REPLACE(?targetMotifMatchCigarP05523MF_00103104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05523MF_00103104, 1, (STRLEN(?targetMotifMatchCigarP05523MF_00103104) - STRLEN(REPLACE(?targetMotifMatchCigarP05523MF_00103104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) .
BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_00103105) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00103a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch121 faldo:location ?templateMotifSequenceMatchRegionP05523122 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05523124 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP05523MF_00103117 .
?templateMotifSequenceMatchRegionP05523122 faldo:begin ?templateMotifSequenceMatchBeginP05523123 .
?templateMotifSequenceMatchBeginP05523123 faldo:position ?templateMotifSequenceMatchBeginPositionP05523118 ;
faldo:reference isoform:P05523-1 .
?templateMotifSequenceProfileAlignmentOperationP05523124 edam:has_input signature:MF_00103 ;
rdf:type edam:operation_0300 .
?targetMotifMatch125 faldo:location ?targetMotifMatchRegionMatch126 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00103128 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP05523MF_00103119 .
?targetMotifMatchRegionMatch126 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00103127 .
?targetMotifMatchRegionMatchBeginMF_00103127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00103120 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00103128 edam:has_input signature:MF_00103 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05523MF_00103117, 1, (STRLEN(?templateMotifCigarP05523MF_00103117) - STRLEN(REPLACE(?templateMotifCigarP05523MF_00103117, CONCAT('^(?:-*[^-]){', STR(((90 - ?templateMotifSequenceMatchBeginPositionP05523118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05523MF_00103119, 1, (STRLEN(?targetMotifMatchCigarP05523MF_00103119) - STRLEN(REPLACE(?targetMotifMatchCigarP05523MF_00103119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05523MF_00103119, 1, (STRLEN(?targetMotifMatchCigarP05523MF_00103119) - STRLEN(REPLACE(?targetMotifMatchCigarP05523MF_00103119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) .
BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_00103120) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00103a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionP05523137 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05523139 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP05523MF_00103132 .
?templateMotifSequenceMatchRegionP05523137 faldo:begin ?templateMotifSequenceMatchBeginP05523138 .
?templateMotifSequenceMatchBeginP05523138 faldo:position ?templateMotifSequenceMatchBeginPositionP05523133 ;
faldo:reference isoform:P05523-1 .
?templateMotifSequenceProfileAlignmentOperationP05523139 edam:has_input signature:MF_00103 ;
rdf:type edam:operation_0300 .
?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00103143 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP05523MF_00103134 .
?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00103142 .
?targetMotifMatchRegionMatchBeginMF_00103142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00103135 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00103143 edam:has_input signature:MF_00103 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05523MF_00103132, 1, (STRLEN(?templateMotifCigarP05523MF_00103132) - STRLEN(REPLACE(?templateMotifCigarP05523MF_00103132, CONCAT('^(?:-*[^-]){', STR(((109 - ?templateMotifSequenceMatchBeginPositionP05523133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05523MF_00103134, 1, (STRLEN(?targetMotifMatchCigarP05523MF_00103134) - STRLEN(REPLACE(?targetMotifMatchCigarP05523MF_00103134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05523MF_00103134, 1, (STRLEN(?targetMotifMatchCigarP05523MF_00103134) - STRLEN(REPLACE(?targetMotifMatchCigarP05523MF_00103134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_00103135) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t146) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00103a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch151 faldo:location ?templateMotifSequenceMatchRegionP05523152 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05523154 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP05523MF_00103147 .
?templateMotifSequenceMatchRegionP05523152 faldo:begin ?templateMotifSequenceMatchBeginP05523153 .
?templateMotifSequenceMatchBeginP05523153 faldo:position ?templateMotifSequenceMatchBeginPositionP05523148 ;
faldo:reference isoform:P05523-1 .
?templateMotifSequenceProfileAlignmentOperationP05523154 edam:has_input signature:MF_00103 ;
rdf:type edam:operation_0300 .
?targetMotifMatch155 faldo:location ?targetMotifMatchRegionMatch156 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00103158 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP05523MF_00103149 .
?targetMotifMatchRegionMatch156 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00103157 .
?targetMotifMatchRegionMatchBeginMF_00103157 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00103150 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00103158 edam:has_input signature:MF_00103 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05523MF_00103147, 1, (STRLEN(?templateMotifCigarP05523MF_00103147) - STRLEN(REPLACE(?templateMotifCigarP05523MF_00103147, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionP05523148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05523MF_00103149, 1, (STRLEN(?targetMotifMatchCigarP05523MF_00103149) - STRLEN(REPLACE(?targetMotifMatchCigarP05523MF_00103149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05523MF_00103149, 1, (STRLEN(?targetMotifMatchCigarP05523MF_00103149) - STRLEN(REPLACE(?targetMotifMatchCigarP05523MF_00103149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) .
BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_00103150) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t161) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER (REGEX('[KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00103a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this a up:Protein .
?this rdfs:seeAlso .
BIND(?this AS ?case11) .
}
}
"xsd:string |
