| http://purl.uniprot.org/unirules/MF_00126#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:50438 up:source unirule:MF_00126 .
_:50439 up:source unirule:MF_00126 .
_:50440 up:source unirule:MF_00126 .
_:50441 up:source unirule:MF_00126 .
_:50442 up:source unirule:MF_00126 .
_:50443 up:source unirule:MF_00126 .
_:50444 up:source unirule:MF_00126 .
_:50445 up:source unirule:MF_00126 .
_:50446 up:source unirule:MF_00126 .
_:50447 up:source unirule:MF_00126 .
_:50448 up:source unirule:MF_00126 .
_:50449 up:source unirule:MF_00126 .
_:50450 up:source unirule:MF_00126 .
_:50451 up:source unirule:MF_00126 .
_:50452 up:source unirule:MF_00126 .
_:50453 up:source unirule:MF_00126 .
_:50454 up:source unirule:MF_00126 .
_:50455 up:source unirule:MF_00126 .
_:50456 up:source unirule:MF_00126 .
_:50457 up:source unirule:MF_00126 .
_:50458 up:source unirule:MF_00126 .
_:50459 up:source unirule:MF_00126 .
_:50460 up:source unirule:MF_00126 .
_:50461 up:source unirule:MF_00126 .
_:50462 up:source unirule:MF_00126 .
_:50463 up:source unirule:MF_00126 .
_:50464 up:source unirule:MF_00126 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0004819 ,
GO:0005524 ,
GO:0005737 ,
GO:0006424 ,
keyword:30 ,
keyword:436 ,
keyword:547 ,
keyword:648 ,
keyword:67 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.1.1.18' ;
up:fullName 'Glutamine--tRNA ligase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Glutaminyl-tRNA synthetase' ;
up:shortName 'GlnRS' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'glnS' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class-I aminoacyl-tRNA synthetase family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:30616 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:30616 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:30616 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:30616 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interaction with tRNA' .
?pfsb39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
rdf:type up:Motif_Annotation ;
rdfs:comment "'HIGH' region" .
?pfsb45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
rdf:type up:Motif_Annotation ;
rdfs:comment "'KMSKS' region" .
?pfsb51 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
up:ligand ?ligand59 ;
rdf:type up:Binding_Site_Annotation .
?pfsb57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?ligand59 rdfs:subClassOf chebi:58359 .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
up:ligand ?ligand66 ;
rdf:type up:Binding_Site_Annotation .
?pfsb64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?ligand66 rdfs:subClassOf chebi:58359 .
?pfs69 up:annotation ?annotation70 .
?annotation70 faldo:begin ?pfsb71 ;
faldo:end ?pfse72 ;
up:ligand ?ligand73 ;
rdf:type up:Binding_Site_Annotation .
?pfsb71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfse72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?ligand73 rdfs:subClassOf chebi:30616 .
_:50465 a rdf:Statement ;
up:attribution _:50438 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:50466 a rdf:Statement ;
up:attribution _:50439 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:50467 a rdf:Statement ;
up:attribution _:50440 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:50468 a rdf:Statement ;
up:attribution _:50441 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:50469 a rdf:Statement ;
up:attribution _:50442 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:50470 a rdf:Statement ;
up:attribution _:50443 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:50471 a rdf:Statement ;
up:attribution _:50444 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:50472 a rdf:Statement ;
up:attribution _:50445 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:30 .
_:50473 a rdf:Statement ;
up:attribution _:50446 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:50474 a rdf:Statement ;
up:attribution _:50447 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:50475 a rdf:Statement ;
up:attribution _:50448 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:50476 a rdf:Statement ;
up:attribution _:50449 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:50477 a rdf:Statement ;
up:attribution _:50450 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:50478 a rdf:Statement ;
up:attribution _:50451 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:50479 a rdf:Statement ;
up:attribution _:50452 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004819 .
_:50480 a rdf:Statement ;
up:attribution _:50453 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006424 .
_:50481 a rdf:Statement ;
up:attribution _:50454 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:50482 a rdf:Statement ;
up:source unirule:MF_00126 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:50483 a rdf:Statement ;
up:attribution _:50455 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:50484 a rdf:Statement ;
up:source unirule:MF_00126 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:50485 a rdf:Statement ;
up:attribution _:50456 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:50486 a rdf:Statement ;
up:source unirule:MF_00126 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:50487 a rdf:Statement ;
up:attribution _:50457 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:50488 a rdf:Statement ;
up:source unirule:MF_00126 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:50489 a rdf:Statement ;
up:attribution _:50458 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:50490 a rdf:Statement ;
up:source unirule:MF_00126 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:50491 a rdf:Statement ;
up:attribution _:50459 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:50492 a rdf:Statement ;
up:source unirule:MF_00126 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:50493 a rdf:Statement ;
up:attribution _:50460 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:50494 a rdf:Statement ;
up:source unirule:MF_00126 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:50495 a rdf:Statement ;
up:attribution _:50461 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:50496 a rdf:Statement ;
up:source unirule:MF_00126 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:50497 a rdf:Statement ;
up:attribution _:50462 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:50498 a rdf:Statement ;
up:source unirule:MF_00126 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:50499 a rdf:Statement ;
up:attribution _:50463 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:50500 a rdf:Statement ;
up:source unirule:MF_00126 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:50501 a rdf:Statement ;
up:attribution _:50464 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00126
#Rule MF_00126 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00126 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00126a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00126a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00126a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00126a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00126a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00126a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch80 faldo:location ?templateMotifSequenceMatchRegionP0096281 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0096283 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00962MF_0012676 .
?templateMotifSequenceMatchRegionP0096281 faldo:begin ?templateMotifSequenceMatchBeginP0096282 .
?templateMotifSequenceMatchBeginP0096282 faldo:position ?templateMotifSequenceMatchBeginPositionP0096277 ;
faldo:reference isoform:P00962-1 .
?templateMotifSequenceProfileAlignmentOperationP0096283 edam:has_input signature:MF_00126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch84 faldo:location ?targetMotifMatchRegionMatch85 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0012687 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00962MF_0012678 .
?targetMotifMatchRegionMatch85 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0012686 .
?targetMotifMatchRegionMatchBeginMF_0012686 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0012679 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0012687 edam:has_input signature:MF_00126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_0012676, 1, (STRLEN(?templateMotifCigarP00962MF_0012676) - STRLEN(REPLACE(?templateMotifCigarP00962MF_0012676, CONCAT('^(?:-*[^-]){', STR(((35 - ?templateMotifSequenceMatchBeginPositionP0096277) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_0012678, 1, (STRLEN(?targetMotifMatchCigarP00962MF_0012678) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_0012678, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_0012678, 1, (STRLEN(?targetMotifMatchCigarP00962MF_0012678) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_0012678, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0012679) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_0012676, 1, (STRLEN(?templateMotifCigarP00962MF_0012676) - STRLEN(REPLACE(?templateMotifCigarP00962MF_0012676, CONCAT('^(?:-*[^-]){', STR(((37 - ?templateMotifSequenceMatchBeginPositionP0096277) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_0012678, 1, (STRLEN(?targetMotifMatchCigarP00962MF_0012678) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_0012678, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_0012678, 1, (STRLEN(?targetMotifMatchCigarP00962MF_0012678) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_0012678, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) .
BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0012679) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t92) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER (REGEX('[ED]PN', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00126a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch97 faldo:location ?templateMotifSequenceMatchRegionP0096298 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00962100 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00962MF_0012693 .
?templateMotifSequenceMatchRegionP0096298 faldo:begin ?templateMotifSequenceMatchBeginP0096299 .
?templateMotifSequenceMatchBeginP0096299 faldo:position ?templateMotifSequenceMatchBeginPositionP0096294 ;
faldo:reference isoform:P00962-1 .
?templateMotifSequenceProfileAlignmentOperationP00962100 edam:has_input signature:MF_00126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch101 faldo:location ?targetMotifMatchRegionMatch102 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00126104 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00962MF_0012695 .
?targetMotifMatchRegionMatch102 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00126103 .
?targetMotifMatchRegionMatchBeginMF_00126103 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0012696 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00126104 edam:has_input signature:MF_00126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_0012693, 1, (STRLEN(?templateMotifCigarP00962MF_0012693) - STRLEN(REPLACE(?templateMotifCigarP00962MF_0012693, CONCAT('^(?:-*[^-]){', STR(((41 - ?templateMotifSequenceMatchBeginPositionP0096294) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_0012695, 1, (STRLEN(?targetMotifMatchCigarP00962MF_0012695) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_0012695, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_0012695, 1, (STRLEN(?targetMotifMatchCigarP00962MF_0012695) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_0012695, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0012696) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_0012693, 1, (STRLEN(?templateMotifCigarP00962MF_0012693) - STRLEN(REPLACE(?templateMotifCigarP00962MF_0012693, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionP0096294) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_0012695, 1, (STRLEN(?targetMotifMatchCigarP00962MF_0012695) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_0012695, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_0012695, 1, (STRLEN(?targetMotifMatchCigarP00962MF_0012695) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_0012695, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0012696) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER (REGEX('H[IL]GH[AS]K[SA]', SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00126a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch114 faldo:location ?templateMotifSequenceMatchRegionP00962115 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00962117 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00962MF_00126110 .
?templateMotifSequenceMatchRegionP00962115 faldo:begin ?templateMotifSequenceMatchBeginP00962116 .
?templateMotifSequenceMatchBeginP00962116 faldo:position ?templateMotifSequenceMatchBeginPositionP00962111 ;
faldo:reference isoform:P00962-1 .
?templateMotifSequenceProfileAlignmentOperationP00962117 edam:has_input signature:MF_00126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch118 faldo:location ?targetMotifMatchRegionMatch119 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00126121 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00962MF_00126112 .
?targetMotifMatchRegionMatch119 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00126120 .
?targetMotifMatchRegionMatchBeginMF_00126120 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00126113 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00126121 edam:has_input signature:MF_00126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126110, 1, (STRLEN(?templateMotifCigarP00962MF_00126110) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126110, CONCAT('^(?:-*[^-]){', STR(((261 - ?templateMotifSequenceMatchBeginPositionP00962111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126112, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126112) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126112, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126112) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) .
BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_00126113) - 1) AS ?thisPositionOn28) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126110, 1, (STRLEN(?templateMotifCigarP00962MF_00126110) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126110, CONCAT('^(?:-*[^-]){', STR(((262 - ?templateMotifSequenceMatchBeginPositionP00962111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126112, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126112) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126112, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126112) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) .
BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_00126113) - 1) AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, (?thisPositionOn29 - ?thisPositionOn28)) = 'RL')) .
BIND(URI(CONCAT(STR(?this), '#MF_00126a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionP00962132 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00962134 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00962MF_00126127 .
?templateMotifSequenceMatchRegionP00962132 faldo:begin ?templateMotifSequenceMatchBeginP00962133 .
?templateMotifSequenceMatchBeginP00962133 faldo:position ?templateMotifSequenceMatchBeginPositionP00962128 ;
faldo:reference isoform:P00962-1 .
?templateMotifSequenceProfileAlignmentOperationP00962134 edam:has_input signature:MF_00126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00126138 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00962MF_00126129 .
?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00126137 .
?targetMotifMatchRegionMatchBeginMF_00126137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00126130 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00126138 edam:has_input signature:MF_00126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126127, 1, (STRLEN(?templateMotifCigarP00962MF_00126127) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126127, CONCAT('^(?:-*[^-]){', STR(((269 - ?templateMotifSequenceMatchBeginPositionP00962128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126129, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126129) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126129, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126129) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) .
BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_00126130) - 1) AS ?thisPositionOn35) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126127, 1, (STRLEN(?templateMotifCigarP00962MF_00126127) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126127, CONCAT('^(?:-*[^-]){', STR(((271 - ?templateMotifSequenceMatchBeginPositionP00962128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126129, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126129) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126129, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126129) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_00126130) - 1) AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER (REGEX('[MVL]SK', SUBSTR(?thisSequenceValue, ?thisPositionOn35, (?thisPositionOn36 - ?thisPositionOn35)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00126a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionP00962149 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00962151 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00962MF_00126144 .
?templateMotifSequenceMatchRegionP00962149 faldo:begin ?templateMotifSequenceMatchBeginP00962150 .
?templateMotifSequenceMatchBeginP00962150 faldo:position ?templateMotifSequenceMatchBeginPositionP00962145 ;
faldo:reference isoform:P00962-1 .
?templateMotifSequenceProfileAlignmentOperationP00962151 edam:has_input signature:MF_00126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00126155 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00962MF_00126146 .
?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00126154 .
?targetMotifMatchRegionMatchBeginMF_00126154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00126147 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00126155 edam:has_input signature:MF_00126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126144, 1, (STRLEN(?templateMotifCigarP00962MF_00126144) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126144, CONCAT('^(?:-*[^-]){', STR(((317 - ?templateMotifSequenceMatchBeginPositionP00962145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126146, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126146) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126146, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126146) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) .
BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_00126147) - 1) AS ?thisPositionOn41) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126144, 1, (STRLEN(?templateMotifCigarP00962MF_00126144) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126144, CONCAT('^(?:-*[^-]){', STR(((324 - ?templateMotifSequenceMatchBeginPositionP00962145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126146, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126146) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126146, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126146) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) .
BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_00126147) - 1) AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t160) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, (?thisPositionOn42 - ?thisPositionOn41)) = 'TKQDNTIE')) .
BIND(URI(CONCAT(STR(?this), '#MF_00126a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch165 faldo:location ?templateMotifSequenceMatchRegionP00962166 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00962168 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00962MF_00126161 .
?templateMotifSequenceMatchRegionP00962166 faldo:begin ?templateMotifSequenceMatchBeginP00962167 .
?templateMotifSequenceMatchBeginP00962167 faldo:position ?templateMotifSequenceMatchBeginPositionP00962162 ;
faldo:reference isoform:P00962-1 .
?templateMotifSequenceProfileAlignmentOperationP00962168 edam:has_input signature:MF_00126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch169 faldo:location ?targetMotifMatchRegionMatch170 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00126172 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00962MF_00126163 .
?targetMotifMatchRegionMatch170 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00126171 .
?targetMotifMatchRegionMatchBeginMF_00126171 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00126164 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00126172 edam:has_input signature:MF_00126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126161, 1, (STRLEN(?templateMotifCigarP00962MF_00126161) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126161, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionP00962162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126163, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126163) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126163, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126163) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) .
BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_00126164) - 1) AS ?thisPositionOn47) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126161, 1, (STRLEN(?templateMotifCigarP00962MF_00126161) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126161, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionP00962162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126163, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126163) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126163, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126163) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) .
BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_00126164) - 1) AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t177) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse46) .
FILTER (REGEX('P[ED]P[NS]G[YF][ARNDCQEGHILKMFPSTWYVBZJUOX]H[LI]GH', SUBSTR(?thisSequenceValue, ?thisPositionOn47, (?thisPositionOn48 - ?thisPositionOn47)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00126a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch182 faldo:location ?templateMotifSequenceMatchRegionP00962183 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00962185 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00962MF_00126178 .
?templateMotifSequenceMatchRegionP00962183 faldo:begin ?templateMotifSequenceMatchBeginP00962184 .
?templateMotifSequenceMatchBeginP00962184 faldo:position ?templateMotifSequenceMatchBeginPositionP00962179 ;
faldo:reference isoform:P00962-1 .
?templateMotifSequenceProfileAlignmentOperationP00962185 edam:has_input signature:MF_00126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch186 faldo:location ?targetMotifMatchRegionMatch187 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00126189 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00962MF_00126180 .
?targetMotifMatchRegionMatch187 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00126188 .
?targetMotifMatchRegionMatchBeginMF_00126188 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00126181 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00126189 edam:has_input signature:MF_00126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126178, 1, (STRLEN(?templateMotifCigarP00962MF_00126178) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126178, CONCAT('^(?:-*[^-]){', STR(((268 - ?templateMotifSequenceMatchBeginPositionP00962179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126180, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126180) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126180, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126180) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) .
BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_00126181) - 1) AS ?thisPositionOn53) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126178, 1, (STRLEN(?templateMotifCigarP00962MF_00126178) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126178, CONCAT('^(?:-*[^-]){', STR(((272 - ?templateMotifSequenceMatchBeginPositionP00962179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126180, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126180) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126180, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126180) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) .
BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_00126181) - 1) AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t194) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse52) .
FILTER (REGEX('[LVI][LMT]SKR', SUBSTR(?thisSequenceValue, ?thisPositionOn53, (?thisPositionOn54 - ?thisPositionOn53)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00126a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch199 faldo:location ?templateMotifSequenceMatchRegionP00962200 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00962202 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00962MF_00126195 .
?templateMotifSequenceMatchRegionP00962200 faldo:begin ?templateMotifSequenceMatchBeginP00962201 .
?templateMotifSequenceMatchBeginP00962201 faldo:position ?templateMotifSequenceMatchBeginPositionP00962196 ;
faldo:reference isoform:P00962-1 .
?templateMotifSequenceProfileAlignmentOperationP00962202 edam:has_input signature:MF_00126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch203 faldo:location ?targetMotifMatchRegionMatch204 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00126206 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00962MF_00126197 .
?targetMotifMatchRegionMatch204 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00126205 .
?targetMotifMatchRegionMatchBeginMF_00126205 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00126198 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00126206 edam:has_input signature:MF_00126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126195, 1, (STRLEN(?templateMotifCigarP00962MF_00126195) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126195, CONCAT('^(?:-*[^-]){', STR(((67 - ?templateMotifSequenceMatchBeginPositionP00962196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1207) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126197, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126197) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126197, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126197) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), '')))), '[^-]', ''))) AS ?step2208) .
BIND(((?step2208 + ?targetMotifMatchRegionMatchBeginPositionMF_00126198) - 1) AS ?thisPositionOn60) .
BIND(?thisPositionOn60 AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t209) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00126a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch214 faldo:location ?templateMotifSequenceMatchRegionP00962215 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00962217 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00962MF_00126210 .
?templateMotifSequenceMatchRegionP00962215 faldo:begin ?templateMotifSequenceMatchBeginP00962216 .
?templateMotifSequenceMatchBeginP00962216 faldo:position ?templateMotifSequenceMatchBeginPositionP00962211 ;
faldo:reference isoform:P00962-1 .
?templateMotifSequenceProfileAlignmentOperationP00962217 edam:has_input signature:MF_00126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch218 faldo:location ?targetMotifMatchRegionMatch219 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00126221 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00962MF_00126212 .
?targetMotifMatchRegionMatch219 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00126220 .
?targetMotifMatchRegionMatchBeginMF_00126220 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00126213 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00126221 edam:has_input signature:MF_00126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126210, 1, (STRLEN(?templateMotifCigarP00962MF_00126210) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126210, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionP00962211) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1222) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126212, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126212) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126212, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126212) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), '')))), '[^-]', ''))) AS ?step2223) .
BIND(((?step2223 + ?targetMotifMatchRegionMatchBeginPositionMF_00126213) - 1) AS ?thisPositionOn67) .
BIND(?thisPositionOn67 AS ?thisPositionOn68) .
BIND(?this AS ?pfs1t224) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse65) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00126a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch229 faldo:location ?templateMotifSequenceMatchRegionP00962230 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00962232 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00962MF_00126225 .
?templateMotifSequenceMatchRegionP00962230 faldo:begin ?templateMotifSequenceMatchBeginP00962231 .
?templateMotifSequenceMatchBeginP00962231 faldo:position ?templateMotifSequenceMatchBeginPositionP00962226 ;
faldo:reference isoform:P00962-1 .
?templateMotifSequenceProfileAlignmentOperationP00962232 edam:has_input signature:MF_00126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch233 faldo:location ?targetMotifMatchRegionMatch234 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00126236 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00962MF_00126227 .
?targetMotifMatchRegionMatch234 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00126235 .
?targetMotifMatchRegionMatchBeginMF_00126235 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00126228 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00126236 edam:has_input signature:MF_00126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126225, 1, (STRLEN(?templateMotifCigarP00962MF_00126225) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126225, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionP00962226) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1237) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126227, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126227) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126227, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126227) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), '')))), '[^-]', ''))) AS ?step2238) .
BIND(((?step2238 + ?targetMotifMatchRegionMatchBeginPositionMF_00126228) - 1) AS ?thisPositionOn74) .
BIND(?thisPositionOn74 AS ?thisPositionOn75) .
BIND(?this AS ?pfs1t239) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse72) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_00126a70')) AS ?annotation70) .
BIND(?this AS ?pfs69) .
}
}
"xsd:string |
