| http://purl.uniprot.org/unirules/MF_00180#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:72502 up:source unirule:MF_00180 .
_:72503 up:source unirule:MF_00180 .
_:72504 up:source unirule:MF_00180 .
_:72505 up:source unirule:MF_00180 .
_:72506 up:source unirule:MF_00180 .
_:72507 up:source unirule:MF_00180 .
_:72508 up:source unirule:MF_00180 .
_:72509 up:source unirule:MF_00180 .
_:72510 up:source unirule:MF_00180 .
_:72511 up:source unirule:MF_00180 .
_:72512 up:source unirule:MF_00180 .
_:72513 up:source unirule:MF_00180 .
_:72514 up:source unirule:MF_00180 .
_:72515 up:source unirule:MF_00180 .
_:72516 up:source unirule:MF_00180 .
_:72517 up:source unirule:MF_00180 .
_:72518 up:source unirule:MF_00180 .
_:72519 up:source unirule:MF_00180 .
_:72520 up:source unirule:MF_00180 .
_:72521 up:source unirule:MF_00180 .
_:72522 up:source unirule:MF_00180 .
_:72523 up:source unirule:MF_00180 .
_:72524 up:source unirule:MF_00180 .
_:72525 up:source unirule:MF_00180 .
_:72526 up:source unirule:MF_00180 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0000287 ,
GO:0008686 ,
GO:0009231 ,
GO:0030145 ,
keyword:456 ,
keyword:460 ,
keyword:464 ,
keyword:479 ,
keyword:686 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.1.99.12' ;
up:fullName '3,4-dihydroxy-2-butanone 4-phosphate synthase' ;
up:shortName 'DHBP synthase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'ribB' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:18420 ,
chebi:29035 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 divalent metal cations per subunit. Magnesium or manganese.' .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; riboflavin biosynthesis; 2-hydroxy-3-oxobutyl phosphate from D-ribulose 5-phosphate: step 1/1.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the DHBP synthase family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:58121 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:58121 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:18420 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:18420 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:18420 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:58121 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Essential for catalytic activity' .
?pfsb53 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Essential for catalytic activity' .
?pfsb59 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
_:72527 a rdf:Statement ;
up:attribution _:72502 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:72528 a rdf:Statement ;
up:attribution _:72503 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:72529 a rdf:Statement ;
up:attribution _:72504 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:72530 a rdf:Statement ;
up:attribution _:72505 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:72531 a rdf:Statement ;
up:attribution _:72506 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:72532 a rdf:Statement ;
up:attribution _:72507 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:72533 a rdf:Statement ;
up:attribution _:72508 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:72534 a rdf:Statement ;
up:attribution _:72509 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:72535 a rdf:Statement ;
up:attribution _:72510 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:72536 a rdf:Statement ;
up:attribution _:72511 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:72537 a rdf:Statement ;
up:attribution _:72512 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:464 .
_:72538 a rdf:Statement ;
up:attribution _:72513 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:72539 a rdf:Statement ;
up:attribution _:72514 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:686 .
_:72540 a rdf:Statement ;
up:attribution _:72515 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:72541 a rdf:Statement ;
up:attribution _:72516 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008686 .
_:72542 a rdf:Statement ;
up:attribution _:72517 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030145 .
_:72543 a rdf:Statement ;
up:attribution _:72518 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009231 .
_:72544 a rdf:Statement ;
up:source unirule:MF_00180 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:72545 a rdf:Statement ;
up:attribution _:72519 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:72546 a rdf:Statement ;
up:source unirule:MF_00180 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:72547 a rdf:Statement ;
up:attribution _:72520 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:72548 a rdf:Statement ;
up:source unirule:MF_00180 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:72549 a rdf:Statement ;
up:attribution _:72521 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:72550 a rdf:Statement ;
up:source unirule:MF_00180 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:72551 a rdf:Statement ;
up:attribution _:72522 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:72552 a rdf:Statement ;
up:source unirule:MF_00180 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:72553 a rdf:Statement ;
up:attribution _:72523 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:72554 a rdf:Statement ;
up:source unirule:MF_00180 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:72555 a rdf:Statement ;
up:attribution _:72524 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:72556 a rdf:Statement ;
up:source unirule:MF_00180 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:72557 a rdf:Statement ;
up:attribution _:72525 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:72558 a rdf:Statement ;
up:source unirule:MF_00180 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:72559 a rdf:Statement ;
up:attribution _:72526 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00180
#Rule MF_00180 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-11-28
VALUES ?supertaxon63 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00180 .
?thisOrganism rdfs:subClassOf+ ?supertaxon63 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_01283 .
})) .
BIND(URI(CONCAT(STR(?this), '#MF_00180a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00180a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00180a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00180a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00180a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00180a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00180a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch68 faldo:location ?templateMotifSequenceMatchRegionQ6036469 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6036471 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ60364MF_0018064 .
?templateMotifSequenceMatchRegionQ6036469 faldo:begin ?templateMotifSequenceMatchBeginQ6036470 .
?templateMotifSequenceMatchBeginQ6036470 faldo:position ?templateMotifSequenceMatchBeginPositionQ6036465 ;
faldo:reference isoform:Q60364-1 .
?templateMotifSequenceProfileAlignmentOperationQ6036471 edam:has_input signature:MF_00180 ;
rdf:type edam:operation_0300 .
?targetMotifMatch72 faldo:location ?targetMotifMatchRegionMatch73 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0018075 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ60364MF_0018066 .
?targetMotifMatchRegionMatch73 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0018074 .
?targetMotifMatchRegionMatchBeginMF_0018074 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0018067 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0018075 edam:has_input signature:MF_00180 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ60364MF_0018064, 1, (STRLEN(?templateMotifCigarQ60364MF_0018064) - STRLEN(REPLACE(?templateMotifCigarQ60364MF_0018064, CONCAT('^(?:-*[^-]){', STR(((25 - ?templateMotifSequenceMatchBeginPositionQ6036465) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ60364MF_0018066, 1, (STRLEN(?targetMotifMatchCigarQ60364MF_0018066) - STRLEN(REPLACE(?targetMotifMatchCigarQ60364MF_0018066, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ60364MF_0018066, 1, (STRLEN(?targetMotifMatchCigarQ60364MF_0018066) - STRLEN(REPLACE(?targetMotifMatchCigarQ60364MF_0018066, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) .
BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0018067) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ60364MF_0018064, 1, (STRLEN(?templateMotifCigarQ60364MF_0018064) - STRLEN(REPLACE(?templateMotifCigarQ60364MF_0018064, CONCAT('^(?:-*[^-]){', STR(((26 - ?templateMotifSequenceMatchBeginPositionQ6036465) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ60364MF_0018066, 1, (STRLEN(?targetMotifMatchCigarQ60364MF_0018066) - STRLEN(REPLACE(?targetMotifMatchCigarQ60364MF_0018066, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ60364MF_0018066, 1, (STRLEN(?targetMotifMatchCigarQ60364MF_0018066) - STRLEN(REPLACE(?targetMotifMatchCigarQ60364MF_0018066, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0018067) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)) = 'RE')) .
BIND(URI(CONCAT(STR(?this), '#MF_00180a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch85 faldo:location ?templateMotifSequenceMatchRegionQ6036486 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6036488 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ60364MF_0018081 .
?templateMotifSequenceMatchRegionQ6036486 faldo:begin ?templateMotifSequenceMatchBeginQ6036487 .
?templateMotifSequenceMatchBeginQ6036487 faldo:position ?templateMotifSequenceMatchBeginPositionQ6036482 ;
faldo:reference isoform:Q60364-1 .
?templateMotifSequenceProfileAlignmentOperationQ6036488 edam:has_input signature:MF_00180 ;
rdf:type edam:operation_0300 .
?targetMotifMatch89 faldo:location ?targetMotifMatchRegionMatch90 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0018092 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ60364MF_0018083 .
?targetMotifMatchRegionMatch90 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0018091 .
?targetMotifMatchRegionMatchBeginMF_0018091 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0018084 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0018092 edam:has_input signature:MF_00180 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ60364MF_0018081, 1, (STRLEN(?templateMotifCigarQ60364MF_0018081) - STRLEN(REPLACE(?templateMotifCigarQ60364MF_0018081, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionQ6036482) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ60364MF_0018083, 1, (STRLEN(?targetMotifMatchCigarQ60364MF_0018083) - STRLEN(REPLACE(?targetMotifMatchCigarQ60364MF_0018083, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ60364MF_0018083, 1, (STRLEN(?targetMotifMatchCigarQ60364MF_0018083) - STRLEN(REPLACE(?targetMotifMatchCigarQ60364MF_0018083, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) .
BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0018084) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ60364MF_0018081, 1, (STRLEN(?templateMotifCigarQ60364MF_0018081) - STRLEN(REPLACE(?templateMotifCigarQ60364MF_0018081, CONCAT('^(?:-*[^-]){', STR(((165 - ?templateMotifSequenceMatchBeginPositionQ6036482) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ60364MF_0018083, 1, (STRLEN(?targetMotifMatchCigarQ60364MF_0018083) - STRLEN(REPLACE(?targetMotifMatchCigarQ60364MF_0018083, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ60364MF_0018083, 1, (STRLEN(?targetMotifMatchCigarQ60364MF_0018083) - STRLEN(REPLACE(?targetMotifMatchCigarQ60364MF_0018083, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0018084) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER (REGEX('R[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][HQ]T', SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00180a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionQ60364103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ60364105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ60364MF_0018098 .
?templateMotifSequenceMatchRegionQ60364103 faldo:begin ?templateMotifSequenceMatchBeginQ60364104 .
?templateMotifSequenceMatchBeginQ60364104 faldo:position ?templateMotifSequenceMatchBeginPositionQ6036499 ;
faldo:reference isoform:Q60364-1 .
?templateMotifSequenceProfileAlignmentOperationQ60364105 edam:has_input signature:MF_00180 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00180109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ60364MF_00180100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00180108 .
?targetMotifMatchRegionMatchBeginMF_00180108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00180101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00180109 edam:has_input signature:MF_00180 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ60364MF_0018098, 1, (STRLEN(?templateMotifCigarQ60364MF_0018098) - STRLEN(REPLACE(?templateMotifCigarQ60364MF_0018098, CONCAT('^(?:-*[^-]){', STR(((26 - ?templateMotifSequenceMatchBeginPositionQ6036499) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ60364MF_00180100, 1, (STRLEN(?targetMotifMatchCigarQ60364MF_00180100) - STRLEN(REPLACE(?targetMotifMatchCigarQ60364MF_00180100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ60364MF_00180100, 1, (STRLEN(?targetMotifMatchCigarQ60364MF_00180100) - STRLEN(REPLACE(?targetMotifMatchCigarQ60364MF_00180100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_00180101) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00180a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionQ60364118 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ60364120 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ60364MF_00180113 .
?templateMotifSequenceMatchRegionQ60364118 faldo:begin ?templateMotifSequenceMatchBeginQ60364119 .
?templateMotifSequenceMatchBeginQ60364119 faldo:position ?templateMotifSequenceMatchBeginPositionQ60364114 ;
faldo:reference isoform:Q60364-1 .
?templateMotifSequenceProfileAlignmentOperationQ60364120 edam:has_input signature:MF_00180 ;
rdf:type edam:operation_0300 .
?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00180124 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ60364MF_00180115 .
?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00180123 .
?targetMotifMatchRegionMatchBeginMF_00180123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00180116 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00180124 edam:has_input signature:MF_00180 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ60364MF_00180113, 1, (STRLEN(?templateMotifCigarQ60364MF_00180113) - STRLEN(REPLACE(?templateMotifCigarQ60364MF_00180113, CONCAT('^(?:-*[^-]){', STR(((26 - ?templateMotifSequenceMatchBeginPositionQ60364114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ60364MF_00180115, 1, (STRLEN(?targetMotifMatchCigarQ60364MF_00180115) - STRLEN(REPLACE(?targetMotifMatchCigarQ60364MF_00180115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ60364MF_00180115, 1, (STRLEN(?targetMotifMatchCigarQ60364MF_00180115) - STRLEN(REPLACE(?targetMotifMatchCigarQ60364MF_00180115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_00180116) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00180a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionQ60364133 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ60364135 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ60364MF_00180128 .
?templateMotifSequenceMatchRegionQ60364133 faldo:begin ?templateMotifSequenceMatchBeginQ60364134 .
?templateMotifSequenceMatchBeginQ60364134 faldo:position ?templateMotifSequenceMatchBeginPositionQ60364129 ;
faldo:reference isoform:Q60364-1 .
?templateMotifSequenceProfileAlignmentOperationQ60364135 edam:has_input signature:MF_00180 ;
rdf:type edam:operation_0300 .
?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00180139 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ60364MF_00180130 .
?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00180138 .
?targetMotifMatchRegionMatchBeginMF_00180138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00180131 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00180139 edam:has_input signature:MF_00180 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ60364MF_00180128, 1, (STRLEN(?templateMotifCigarQ60364MF_00180128) - STRLEN(REPLACE(?templateMotifCigarQ60364MF_00180128, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionQ60364129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ60364MF_00180130, 1, (STRLEN(?targetMotifMatchCigarQ60364MF_00180130) - STRLEN(REPLACE(?targetMotifMatchCigarQ60364MF_00180130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ60364MF_00180130, 1, (STRLEN(?targetMotifMatchCigarQ60364MF_00180130) - STRLEN(REPLACE(?targetMotifMatchCigarQ60364MF_00180130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_00180131) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00180a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch147 faldo:location ?templateMotifSequenceMatchRegionQ60364148 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ60364150 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ60364MF_00180143 .
?templateMotifSequenceMatchRegionQ60364148 faldo:begin ?templateMotifSequenceMatchBeginQ60364149 .
?templateMotifSequenceMatchBeginQ60364149 faldo:position ?templateMotifSequenceMatchBeginPositionQ60364144 ;
faldo:reference isoform:Q60364-1 .
?templateMotifSequenceProfileAlignmentOperationQ60364150 edam:has_input signature:MF_00180 ;
rdf:type edam:operation_0300 .
?targetMotifMatch151 faldo:location ?targetMotifMatchRegionMatch152 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00180154 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ60364MF_00180145 .
?targetMotifMatchRegionMatch152 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00180153 .
?targetMotifMatchRegionMatchBeginMF_00180153 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00180146 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00180154 edam:has_input signature:MF_00180 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ60364MF_00180143, 1, (STRLEN(?templateMotifCigarQ60364MF_00180143) - STRLEN(REPLACE(?templateMotifCigarQ60364MF_00180143, CONCAT('^(?:-*[^-]){', STR(((30 - ?templateMotifSequenceMatchBeginPositionQ60364144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ60364MF_00180145, 1, (STRLEN(?targetMotifMatchCigarQ60364MF_00180145) - STRLEN(REPLACE(?targetMotifMatchCigarQ60364MF_00180145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ60364MF_00180145, 1, (STRLEN(?targetMotifMatchCigarQ60364MF_00180145) - STRLEN(REPLACE(?targetMotifMatchCigarQ60364MF_00180145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) .
BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_00180146) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t157) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00180a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch162 faldo:location ?templateMotifSequenceMatchRegionQ60364163 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ60364165 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ60364MF_00180158 .
?templateMotifSequenceMatchRegionQ60364163 faldo:begin ?templateMotifSequenceMatchBeginQ60364164 .
?templateMotifSequenceMatchBeginQ60364164 faldo:position ?templateMotifSequenceMatchBeginPositionQ60364159 ;
faldo:reference isoform:Q60364-1 .
?templateMotifSequenceProfileAlignmentOperationQ60364165 edam:has_input signature:MF_00180 ;
rdf:type edam:operation_0300 .
?targetMotifMatch166 faldo:location ?targetMotifMatchRegionMatch167 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00180169 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ60364MF_00180160 .
?targetMotifMatchRegionMatch167 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00180168 .
?targetMotifMatchRegionMatchBeginMF_00180168 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00180161 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00180169 edam:has_input signature:MF_00180 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ60364MF_00180158, 1, (STRLEN(?templateMotifCigarQ60364MF_00180158) - STRLEN(REPLACE(?templateMotifCigarQ60364MF_00180158, CONCAT('^(?:-*[^-]){', STR(((147 - ?templateMotifSequenceMatchBeginPositionQ60364159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ60364MF_00180160, 1, (STRLEN(?targetMotifMatchCigarQ60364MF_00180160) - STRLEN(REPLACE(?targetMotifMatchCigarQ60364MF_00180160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ60364MF_00180160, 1, (STRLEN(?targetMotifMatchCigarQ60364MF_00180160) - STRLEN(REPLACE(?targetMotifMatchCigarQ60364MF_00180160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), '')))), '[^-]', ''))) AS ?step2171) .
BIND(((?step2171 + ?targetMotifMatchRegionMatchBeginPositionMF_00180161) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t172) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00180a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch177 faldo:location ?templateMotifSequenceMatchRegionQ60364178 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ60364180 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ60364MF_00180173 .
?templateMotifSequenceMatchRegionQ60364178 faldo:begin ?templateMotifSequenceMatchBeginQ60364179 .
?templateMotifSequenceMatchBeginQ60364179 faldo:position ?templateMotifSequenceMatchBeginPositionQ60364174 ;
faldo:reference isoform:Q60364-1 .
?templateMotifSequenceProfileAlignmentOperationQ60364180 edam:has_input signature:MF_00180 ;
rdf:type edam:operation_0300 .
?targetMotifMatch181 faldo:location ?targetMotifMatchRegionMatch182 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00180184 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ60364MF_00180175 .
?targetMotifMatchRegionMatch182 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00180183 .
?targetMotifMatchRegionMatchBeginMF_00180183 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00180176 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00180184 edam:has_input signature:MF_00180 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ60364MF_00180173, 1, (STRLEN(?templateMotifCigarQ60364MF_00180173) - STRLEN(REPLACE(?templateMotifCigarQ60364MF_00180173, CONCAT('^(?:-*[^-]){', STR(((185 - ?templateMotifSequenceMatchBeginPositionQ60364174) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ60364MF_00180175, 1, (STRLEN(?targetMotifMatchCigarQ60364MF_00180175) - STRLEN(REPLACE(?targetMotifMatchCigarQ60364MF_00180175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ60364MF_00180175, 1, (STRLEN(?targetMotifMatchCigarQ60364MF_00180175) - STRLEN(REPLACE(?targetMotifMatchCigarQ60364MF_00180175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) .
BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_00180176) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs1t187) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00180a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
}
"xsd:string |
