| http://purl.uniprot.org/unirules/MF_00430#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:170595 up:source unirule:MF_00430 .
_:170596 up:source unirule:MF_00430 .
_:170597 up:source unirule:MF_00430 .
_:170598 up:source unirule:MF_00430 .
_:170599 up:source unirule:MF_00430 .
_:170600 up:source unirule:MF_00430 .
_:170601 up:source unirule:MF_00430 .
_:170602 up:source unirule:MF_00430 .
_:170603 up:source unirule:MF_00430 .
_:170604 up:source unirule:MF_00430 .
_:170605 up:source unirule:MF_00430 .
_:170606 up:source unirule:MF_00430 .
_:170607 up:source unirule:MF_00430 .
_:170608 up:source unirule:MF_00430 .
_:170609 up:source unirule:MF_00430 .
_:170610 up:source unirule:MF_00430 .
_:170611 up:source unirule:MF_00430 .
_:170612 up:source unirule:MF_00430 .
_:170613 up:source unirule:MF_00430 .
_:170614 up:source unirule:MF_00430 .
_:170615 up:source unirule:MF_00430 .
_:170616 up:source unirule:MF_00430 .
_:170617 up:source unirule:MF_00430 .
_:170618 up:source unirule:MF_00430 .
_:170619 up:source unirule:MF_00430 .
_:170620 up:source unirule:MF_00430 .
_:170621 up:source unirule:MF_00430 .
_:170622 up:source unirule:MF_00430 .
_:170623 up:source unirule:MF_00430 .
_:170624 up:source unirule:MF_00430 .
_:170625 up:source unirule:MF_00430 .
_:170626 up:source unirule:MF_00430 .
_:170627 up:source unirule:MF_00430 .
_:170628 up:source unirule:MF_00430 .
_:170629 up:source unirule:MF_00430 .
_:170630 up:source unirule:MF_00430 .
_:170631 up:source unirule:MF_00430 .
_:170632 up:source unirule:MF_00430 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0005886 ,
GO:0006814 ,
GO:0009055 ,
keyword:1003 ,
keyword:1133 ,
keyword:1278 ,
keyword:274 ,
keyword:285 ,
keyword:406 ,
keyword:472 ,
keyword:520 ,
keyword:739 ,
keyword:812 ,
keyword:813 ,
keyword:830 ,
keyword:915 ;
up:recommendedName ?name0 .
?name0 up:ecName '7.2.1.1' ;
up:fullName 'Na(+)-translocating NADH-quinone reductase subunit F' ;
up:shortName 'Na(+)-NQR subunit F' ,
'Na(+)-translocating NQR subunit F' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'NQR complex subunit F' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'NQR-1 subunit F' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'nqrF' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:190135 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 [2Fe-2S] cluster.' .
?annotation8 up:cofactor chebi:57692 ;
rdf:type up:Cofactor_Annotation .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Composed of six subunits; NqrA, NqrB, NqrC, NqrD, NqrE and NqrF.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the NqrF family.' .
?case11 up:classifiedWith keyword:1 ,
keyword:408 ,
keyword:411 ,
keyword:479 .
?case12 up:classifiedWith keyword:997 .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:190135 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:190135 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:190135 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:190135 .
?sam42 up:classifiedWith keyword:1133 ,
keyword:472 ,
keyword:812 .
?transmembrane43 faldo:begin ?transmembraneb44 ;
faldo:end ?transmembranee45 .
?transmembraneb44 faldo:position ?transmembranebp46 .
?transmembranee45 faldo:position ?transmembraneep47 .
?keyword48 up:range ?transmembrane43 .
?keyword49 up:range ?transmembrane43 .
?keyword50 up:range ?transmembrane43 .
_:170633 a rdf:Statement ;
up:attribution _:170595 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:170634 a rdf:Statement ;
up:attribution _:170596 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:170635 a rdf:Statement ;
up:attribution _:170597 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:170636 a rdf:Statement ;
up:attribution _:170598 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:170637 a rdf:Statement ;
up:attribution _:170599 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:170638 a rdf:Statement ;
up:attribution _:170600 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:170639 a rdf:Statement ;
up:attribution _:170601 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:170640 a rdf:Statement ;
up:attribution _:170602 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:170641 a rdf:Statement ;
up:attribution _:170603 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:170642 a rdf:Statement ;
up:attribution _:170604 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:170643 a rdf:Statement ;
up:attribution _:170605 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1278 .
_:170644 a rdf:Statement ;
up:attribution _:170606 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:170645 a rdf:Statement ;
up:attribution _:170607 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:830 .
_:170646 a rdf:Statement ;
up:attribution _:170608 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:813 .
_:170647 a rdf:Statement ;
up:attribution _:170609 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:406 .
_:170648 a rdf:Statement ;
up:attribution _:170610 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:915 .
_:170649 a rdf:Statement ;
up:attribution _:170611 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:739 .
_:170650 a rdf:Statement ;
up:attribution _:170612 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:170651 a rdf:Statement ;
up:attribution _:170613 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:274 .
_:170652 a rdf:Statement ;
up:attribution _:170614 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:170653 a rdf:Statement ;
up:attribution _:170615 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:170654 a rdf:Statement ;
up:attribution _:170616 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:170655 a rdf:Statement ;
up:attribution _:170617 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:170656 a rdf:Statement ;
up:attribution _:170618 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009055 .
_:170657 a rdf:Statement ;
up:attribution _:170619 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006814 .
_:170658 a rdf:Statement ;
up:attribution _:170620 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:170659 a rdf:Statement ;
up:attribution _:170621 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:170660 a rdf:Statement ;
up:attribution _:170622 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:170661 a rdf:Statement ;
up:attribution _:170623 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:170662 a rdf:Statement ;
up:attribution _:170624 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1 .
_:170663 a rdf:Statement ;
up:attribution _:170625 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:170664 a rdf:Statement ;
up:source unirule:MF_00430 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:170665 a rdf:Statement ;
up:attribution _:170626 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:170666 a rdf:Statement ;
up:source unirule:MF_00430 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:170667 a rdf:Statement ;
up:attribution _:170627 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:170668 a rdf:Statement ;
up:source unirule:MF_00430 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:170669 a rdf:Statement ;
up:attribution _:170628 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:170670 a rdf:Statement ;
up:source unirule:MF_00430 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:170671 a rdf:Statement ;
up:attribution _:170629 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:170672 a rdf:Statement ;
up:attribution _:170630 ;
rdf:subject ?sam42 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:170673 a rdf:Statement ;
up:attribution _:170631 ;
rdf:subject ?sam42 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:170674 a rdf:Statement ;
up:attribution _:170632 ;
rdf:subject ?sam42 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00430
#Rule MF_00430 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00430 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00430a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00430a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00430a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00430a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00430a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00430a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00430a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00430a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_00430a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch55 faldo:location ?templateMotifSequenceMatchRegionQ5658456 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5658458 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ56584MF_0043051 .
?templateMotifSequenceMatchRegionQ5658456 faldo:begin ?templateMotifSequenceMatchBeginQ5658457 .
?templateMotifSequenceMatchBeginQ5658457 faldo:position ?templateMotifSequenceMatchBeginPositionQ5658452 ;
faldo:reference isoform:Q56584-1 .
?templateMotifSequenceProfileAlignmentOperationQ5658458 edam:has_input signature:MF_00430 ;
rdf:type edam:operation_0300 .
?targetMotifMatch59 faldo:location ?targetMotifMatchRegionMatch60 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0043062 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ56584MF_0043053 .
?targetMotifMatchRegionMatch60 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0043061 .
?targetMotifMatchRegionMatchBeginMF_0043061 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0043054 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0043062 edam:has_input signature:MF_00430 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ56584MF_0043051, 1, (STRLEN(?templateMotifCigarQ56584MF_0043051) - STRLEN(REPLACE(?templateMotifCigarQ56584MF_0043051, CONCAT('^(?:-*[^-]){', STR(((69 - ?templateMotifSequenceMatchBeginPositionQ5658452) + 1)), '}'), '')))), '[a-z]', '')) AS ?step163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ56584MF_0043053, 1, (STRLEN(?targetMotifMatchCigarQ56584MF_0043053) - STRLEN(REPLACE(?targetMotifMatchCigarQ56584MF_0043053, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ56584MF_0043053, 1, (STRLEN(?targetMotifMatchCigarQ56584MF_0043053) - STRLEN(REPLACE(?targetMotifMatchCigarQ56584MF_0043053, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), '')))), '[^-]', ''))) AS ?step264) .
BIND(((?step264 + ?targetMotifMatchRegionMatchBeginPositionMF_0043054) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00430a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch70 faldo:location ?templateMotifSequenceMatchRegionQ5658471 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5658473 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ56584MF_0043066 .
?templateMotifSequenceMatchRegionQ5658471 faldo:begin ?templateMotifSequenceMatchBeginQ5658472 .
?templateMotifSequenceMatchBeginQ5658472 faldo:position ?templateMotifSequenceMatchBeginPositionQ5658467 ;
faldo:reference isoform:Q56584-1 .
?templateMotifSequenceProfileAlignmentOperationQ5658473 edam:has_input signature:MF_00430 ;
rdf:type edam:operation_0300 .
?targetMotifMatch74 faldo:location ?targetMotifMatchRegionMatch75 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0043077 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ56584MF_0043068 .
?targetMotifMatchRegionMatch75 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0043076 .
?targetMotifMatchRegionMatchBeginMF_0043076 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0043069 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0043077 edam:has_input signature:MF_00430 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ56584MF_0043066, 1, (STRLEN(?templateMotifCigarQ56584MF_0043066) - STRLEN(REPLACE(?templateMotifCigarQ56584MF_0043066, CONCAT('^(?:-*[^-]){', STR(((75 - ?templateMotifSequenceMatchBeginPositionQ5658467) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ56584MF_0043068, 1, (STRLEN(?targetMotifMatchCigarQ56584MF_0043068) - STRLEN(REPLACE(?targetMotifMatchCigarQ56584MF_0043068, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ56584MF_0043068, 1, (STRLEN(?targetMotifMatchCigarQ56584MF_0043068) - STRLEN(REPLACE(?targetMotifMatchCigarQ56584MF_0043068, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0043069) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00430a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch85 faldo:location ?templateMotifSequenceMatchRegionQ5658486 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5658488 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ56584MF_0043081 .
?templateMotifSequenceMatchRegionQ5658486 faldo:begin ?templateMotifSequenceMatchBeginQ5658487 .
?templateMotifSequenceMatchBeginQ5658487 faldo:position ?templateMotifSequenceMatchBeginPositionQ5658482 ;
faldo:reference isoform:Q56584-1 .
?templateMotifSequenceProfileAlignmentOperationQ5658488 edam:has_input signature:MF_00430 ;
rdf:type edam:operation_0300 .
?targetMotifMatch89 faldo:location ?targetMotifMatchRegionMatch90 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0043092 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ56584MF_0043083 .
?targetMotifMatchRegionMatch90 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0043091 .
?targetMotifMatchRegionMatchBeginMF_0043091 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0043084 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0043092 edam:has_input signature:MF_00430 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ56584MF_0043081, 1, (STRLEN(?templateMotifCigarQ56584MF_0043081) - STRLEN(REPLACE(?templateMotifCigarQ56584MF_0043081, CONCAT('^(?:-*[^-]){', STR(((78 - ?templateMotifSequenceMatchBeginPositionQ5658482) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ56584MF_0043083, 1, (STRLEN(?targetMotifMatchCigarQ56584MF_0043083) - STRLEN(REPLACE(?targetMotifMatchCigarQ56584MF_0043083, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ56584MF_0043083, 1, (STRLEN(?targetMotifMatchCigarQ56584MF_0043083) - STRLEN(REPLACE(?targetMotifMatchCigarQ56584MF_0043083, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) .
BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0043084) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00430a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch100 faldo:location ?templateMotifSequenceMatchRegionQ56584101 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ56584103 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ56584MF_0043096 .
?templateMotifSequenceMatchRegionQ56584101 faldo:begin ?templateMotifSequenceMatchBeginQ56584102 .
?templateMotifSequenceMatchBeginQ56584102 faldo:position ?templateMotifSequenceMatchBeginPositionQ5658497 ;
faldo:reference isoform:Q56584-1 .
?templateMotifSequenceProfileAlignmentOperationQ56584103 edam:has_input signature:MF_00430 ;
rdf:type edam:operation_0300 .
?targetMotifMatch104 faldo:location ?targetMotifMatchRegionMatch105 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00430107 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ56584MF_0043098 .
?targetMotifMatchRegionMatch105 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00430106 .
?targetMotifMatchRegionMatchBeginMF_00430106 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0043099 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00430107 edam:has_input signature:MF_00430 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ56584MF_0043096, 1, (STRLEN(?templateMotifCigarQ56584MF_0043096) - STRLEN(REPLACE(?templateMotifCigarQ56584MF_0043096, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionQ5658497) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ56584MF_0043098, 1, (STRLEN(?targetMotifMatchCigarQ56584MF_0043098) - STRLEN(REPLACE(?targetMotifMatchCigarQ56584MF_0043098, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ56584MF_0043098, 1, (STRLEN(?targetMotifMatchCigarQ56584MF_0043098) - STRLEN(REPLACE(?targetMotifMatchCigarQ56584MF_0043098, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) .
BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0043099) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t110) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00430a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this a up:Protein .
?this rdfs:seeAlso .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:proteome .
} UNION {
?this up:proteome ?p111 .
?p111 skos:narrower .
}
BIND(?this AS ?case12) .
}
OPTIONAL {
?this a up:Protein .
{
FILTER (! (EXISTS {
{
?this up:proteome .
} UNION {
?this up:proteome ?p112 .
?p112 skos:narrower .
}
})) .
} UNION {
{
?this up:proteome .
} UNION {
?this up:proteome ?p113 .
?p113 skos:narrower .
}
}
BIND(?this AS ?case13) .
}
OPTIONAL {
?this up:annotation ?samtransmembrane114 ;
up:sequence ?thisSequence .
?samtransmembrane114 up:range ?samtransmembraner115 ;
rdf:type up:Transmembrane_Annotation .
?samtransmembraner115 faldo:begin ?samtransmembraneb116 ;
faldo:end ?samtransmembranee117 .
?samtransmembraneb116 faldo:position ?samtransmembranebp118 ;
faldo:reference ?thisSequence .
?samtransmembranee117 faldo:position ?samtransmembraneep119 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam42) .
}
BIND(URI(CONCAT(STR(?this), '#MF_00430a48')) AS ?keyword48) .
BIND(URI(CONCAT(STR(?this), '#MF_00430a49')) AS ?keyword49) .
BIND(URI(CONCAT(STR(?this), '#MF_00430a50')) AS ?keyword50) .
}
"xsd:string |
