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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_00461#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00461#construct-template-168 |
| http://purl.uniprot.org/unirules/MF_00461#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00461#construct-template-144 |
| http://purl.uniprot.org/unirules/MF_00461#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00461#construct-template-143 |
| http://purl.uniprot.org/unirules/MF_00461#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00461#construct-template-169 |
| http://purl.uniprot.org/unirules/MF_00461#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00461#construct-template-145 |
| http://purl.uniprot.org/unirules/MF_00461#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00461#construct-template-146 |
| http://purl.uniprot.org/unirules/MF_00461#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00461#construct-template-147 |
| http://purl.uniprot.org/unirules/MF_00461#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00461#construct-template-148 |
| http://purl.uniprot.org/unirules/MF_00461#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00461#construct-template-149 |
| http://purl.uniprot.org/unirules/MF_00461#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00461#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00461#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00461#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00461#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00461#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:184464 up:source unirule:MF_00461 .
_:184465 up:source unirule:MF_00461 .
_:184466 up:source unirule:MF_00461 .
_:184467 up:source unirule:MF_00461 .
_:184468 up:source unirule:MF_00461 .
_:184469 up:source unirule:MF_00461 .
_:184470 up:source unirule:MF_00461 .
_:184471 up:source unirule:MF_00461 .
_:184472 up:source unirule:MF_00461 .
_:184473 up:source unirule:MF_00461 .
_:184474 up:source unirule:MF_00461 .
_:184475 up:source unirule:MF_00461 .
_:184476 up:source unirule:MF_00461 .
_:184477 up:source unirule:MF_00461 .
_:184478 up:source unirule:MF_00461 .
_:184479 up:source unirule:MF_00461 .
_:184480 up:source unirule:MF_00461 .
_:184481 up:source unirule:MF_00461 .
_:184482 up:source unirule:MF_00461 .
_:184483 up:source unirule:MF_00461 .
_:184484 up:source unirule:MF_00461 .
_:184485 up:source unirule:MF_00461 .
_:184486 up:source unirule:MF_00461 .
_:184487 up:source unirule:MF_00461 .
_:184488 up:source unirule:MF_00461 .
_:184489 up:source unirule:MF_00461 .
_:184490 up:source unirule:MF_00461 .
_:184491 up:source unirule:MF_00461 .
_:184492 up:source unirule:MF_00461 .
?this up:annotation ?annotation0 ,
?annotation1 ;
up:classifiedWith GO:0022900 ,
keyword:1278 ,
keyword:249 ,
keyword:408 ,
keyword:411 ,
keyword:472 ,
keyword:479 ,
keyword:4 ,
keyword:677 ,
keyword:813 .
?annotation0 up:cofactor chebi:49883 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 [4Fe-4S] clusters per subunit.' .
?annotation1 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.' .
?case3 up:classifiedWith GO:0009399 ,
keyword:535 .
?case4 up:classifiedWith GO:0005886 ,
keyword:1003 .
?case5 up:alternativeName ?name7 ;
up:recommendedName ?name6 .
?name6 up:ecName '7.-.-.-' ;
up:fullName 'Ion-translocating oxidoreductase complex subunit C' ;
rdf:type up:Structured_Name .
?name7 up:fullName 'Rsx electron transport complex subunit C' ;
rdf:type up:Structured_Name .
?case8 up:alternativeName ?name10 ;
up:recommendedName ?name9 .
?name9 up:ecName '7.-.-.-' ;
up:fullName 'Ion-translocating oxidoreductase complex subunit C' ;
rdf:type up:Structured_Name .
?name10 up:fullName 'Rnf electron transport complex subunit C' ;
rdf:type up:Structured_Name .
?case12 up:classifiedWith keyword:997 .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:49883 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:49883 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:49883 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:49883 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:49883 .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:49883 .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
up:ligand ?ligand60 ;
rdf:type up:Binding_Site_Annotation .
?pfsb58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand60 rdfs:subClassOf chebi:49883 .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
up:ligand ?ligand67 ;
rdf:type up:Binding_Site_Annotation .
?pfsb65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?ligand67 rdfs:subClassOf chebi:49883 .
_:184493 a rdf:Statement ;
up:attribution _:184464 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:184494 a rdf:Statement ;
up:attribution _:184465 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:184495 a rdf:Statement ;
up:attribution _:184466 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:184496 a rdf:Statement ;
up:attribution _:184467 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:249 .
_:184497 a rdf:Statement ;
up:attribution _:184468 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:184498 a rdf:Statement ;
up:attribution _:184469 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:184499 a rdf:Statement ;
up:attribution _:184470 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:184500 a rdf:Statement ;
up:attribution _:184471 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:184501 a rdf:Statement ;
up:attribution _:184472 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:677 .
_:184502 a rdf:Statement ;
up:attribution _:184473 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1278 .
_:184503 a rdf:Statement ;
up:attribution _:184474 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:813 .
_:184504 a rdf:Statement ;
up:attribution _:184475 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0022900 .
_:184505 a rdf:Statement ;
up:attribution _:184476 ;
rdf:subject ?case3 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:535 .
_:184506 a rdf:Statement ;
up:attribution _:184477 ;
rdf:subject ?case3 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009399 .
_:184507 a rdf:Statement ;
up:attribution _:184478 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:184508 a rdf:Statement ;
up:attribution _:184479 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:184509 a rdf:Statement ;
up:attribution _:184480 ;
rdf:subject ?case5 ;
rdf:predicate up:recommendedName ;
rdf:object ?name6 .
_:184510 a rdf:Statement ;
up:attribution _:184481 ;
rdf:subject ?case5 ;
rdf:predicate up:alternativeName ;
rdf:object ?name7 .
_:184511 a rdf:Statement ;
up:attribution _:184482 ;
rdf:subject ?case8 ;
rdf:predicate up:recommendedName ;
rdf:object ?name9 .
_:184512 a rdf:Statement ;
up:attribution _:184483 ;
rdf:subject ?case8 ;
rdf:predicate up:alternativeName ;
rdf:object ?name10 .
_:184513 a rdf:Statement ;
up:attribution _:184484 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:184514 a rdf:Statement ;
up:source unirule:MF_00461 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:184515 a rdf:Statement ;
up:attribution _:184485 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:184516 a rdf:Statement ;
up:source unirule:MF_00461 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:184517 a rdf:Statement ;
up:attribution _:184486 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:184518 a rdf:Statement ;
up:source unirule:MF_00461 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:184519 a rdf:Statement ;
up:attribution _:184487 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:184520 a rdf:Statement ;
up:source unirule:MF_00461 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:184521 a rdf:Statement ;
up:attribution _:184488 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:184522 a rdf:Statement ;
up:source unirule:MF_00461 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:184523 a rdf:Statement ;
up:attribution _:184489 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:184524 a rdf:Statement ;
up:source unirule:MF_00461 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:184525 a rdf:Statement ;
up:attribution _:184490 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:184526 a rdf:Statement ;
up:source unirule:MF_00461 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:184527 a rdf:Statement ;
up:attribution _:184491 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:184528 a rdf:Statement ;
up:source unirule:MF_00461 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:184529 a rdf:Statement ;
up:attribution _:184492 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00461
#Rule MF_00461 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
VALUES ?supertaxon70 {taxon:2157 taxon:2}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00461 .
?thisOrganism rdfs:subClassOf+ ?supertaxon70 .
BIND(URI(CONCAT(STR(?this), '#MF_00461a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_00461a1')) AS ?annotation1) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch75 faldo:location ?templateMotifSequenceMatchRegionQ5271676 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5271678 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ52716MF_0046171 .
?templateMotifSequenceMatchRegionQ5271676 faldo:begin ?templateMotifSequenceMatchBeginQ5271677 .
?templateMotifSequenceMatchBeginQ5271677 faldo:position ?templateMotifSequenceMatchBeginPositionQ5271672 ;
faldo:reference isoform:Q52716-1 .
?templateMotifSequenceProfileAlignmentOperationQ5271678 edam:has_input signature:MF_00461 ;
rdf:type edam:operation_0300 .
?targetMotifMatch79 faldo:location ?targetMotifMatchRegionMatch80 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0046182 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ52716MF_0046173 .
?targetMotifMatchRegionMatch80 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0046181 .
?targetMotifMatchRegionMatchBeginMF_0046181 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0046174 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0046182 edam:has_input signature:MF_00461 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52716MF_0046171, 1, (STRLEN(?templateMotifCigarQ52716MF_0046171) - STRLEN(REPLACE(?templateMotifCigarQ52716MF_0046171, CONCAT('^(?:-*[^-]){', STR(((381 - ?templateMotifSequenceMatchBeginPositionQ5271672) + 1)), '}'), '')))), '[a-z]', '')) AS ?step183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52716MF_0046173, 1, (STRLEN(?targetMotifMatchCigarQ52716MF_0046173) - STRLEN(REPLACE(?targetMotifMatchCigarQ52716MF_0046173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52716MF_0046173, 1, (STRLEN(?targetMotifMatchCigarQ52716MF_0046173) - STRLEN(REPLACE(?targetMotifMatchCigarQ52716MF_0046173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), '')))), '[^-]', ''))) AS ?step284) .
BIND(((?step284 + ?targetMotifMatchRegionMatchBeginPositionMF_0046174) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t85) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00461a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch90 faldo:location ?templateMotifSequenceMatchRegionQ5271691 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5271693 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ52716MF_0046186 .
?templateMotifSequenceMatchRegionQ5271691 faldo:begin ?templateMotifSequenceMatchBeginQ5271692 .
?templateMotifSequenceMatchBeginQ5271692 faldo:position ?templateMotifSequenceMatchBeginPositionQ5271687 ;
faldo:reference isoform:Q52716-1 .
?templateMotifSequenceProfileAlignmentOperationQ5271693 edam:has_input signature:MF_00461 ;
rdf:type edam:operation_0300 .
?targetMotifMatch94 faldo:location ?targetMotifMatchRegionMatch95 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0046197 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ52716MF_0046188 .
?targetMotifMatchRegionMatch95 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0046196 .
?targetMotifMatchRegionMatchBeginMF_0046196 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0046189 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0046197 edam:has_input signature:MF_00461 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52716MF_0046186, 1, (STRLEN(?templateMotifCigarQ52716MF_0046186) - STRLEN(REPLACE(?templateMotifCigarQ52716MF_0046186, CONCAT('^(?:-*[^-]){', STR(((384 - ?templateMotifSequenceMatchBeginPositionQ5271687) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52716MF_0046188, 1, (STRLEN(?targetMotifMatchCigarQ52716MF_0046188) - STRLEN(REPLACE(?targetMotifMatchCigarQ52716MF_0046188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52716MF_0046188, 1, (STRLEN(?targetMotifMatchCigarQ52716MF_0046188) - STRLEN(REPLACE(?targetMotifMatchCigarQ52716MF_0046188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) .
BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0046189) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00461a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionQ52716106 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52716108 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ52716MF_00461101 .
?templateMotifSequenceMatchRegionQ52716106 faldo:begin ?templateMotifSequenceMatchBeginQ52716107 .
?templateMotifSequenceMatchBeginQ52716107 faldo:position ?templateMotifSequenceMatchBeginPositionQ52716102 ;
faldo:reference isoform:Q52716-1 .
?templateMotifSequenceProfileAlignmentOperationQ52716108 edam:has_input signature:MF_00461 ;
rdf:type edam:operation_0300 .
?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00461112 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ52716MF_00461103 .
?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00461111 .
?targetMotifMatchRegionMatchBeginMF_00461111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00461104 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00461112 edam:has_input signature:MF_00461 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52716MF_00461101, 1, (STRLEN(?templateMotifCigarQ52716MF_00461101) - STRLEN(REPLACE(?templateMotifCigarQ52716MF_00461101, CONCAT('^(?:-*[^-]){', STR(((387 - ?templateMotifSequenceMatchBeginPositionQ52716102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52716MF_00461103, 1, (STRLEN(?targetMotifMatchCigarQ52716MF_00461103) - STRLEN(REPLACE(?targetMotifMatchCigarQ52716MF_00461103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52716MF_00461103, 1, (STRLEN(?targetMotifMatchCigarQ52716MF_00461103) - STRLEN(REPLACE(?targetMotifMatchCigarQ52716MF_00461103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) .
BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_00461104) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t115) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00461a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch120 faldo:location ?templateMotifSequenceMatchRegionQ52716121 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52716123 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ52716MF_00461116 .
?templateMotifSequenceMatchRegionQ52716121 faldo:begin ?templateMotifSequenceMatchBeginQ52716122 .
?templateMotifSequenceMatchBeginQ52716122 faldo:position ?templateMotifSequenceMatchBeginPositionQ52716117 ;
faldo:reference isoform:Q52716-1 .
?templateMotifSequenceProfileAlignmentOperationQ52716123 edam:has_input signature:MF_00461 ;
rdf:type edam:operation_0300 .
?targetMotifMatch124 faldo:location ?targetMotifMatchRegionMatch125 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00461127 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ52716MF_00461118 .
?targetMotifMatchRegionMatch125 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00461126 .
?targetMotifMatchRegionMatchBeginMF_00461126 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00461119 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00461127 edam:has_input signature:MF_00461 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52716MF_00461116, 1, (STRLEN(?templateMotifCigarQ52716MF_00461116) - STRLEN(REPLACE(?templateMotifCigarQ52716MF_00461116, CONCAT('^(?:-*[^-]){', STR(((391 - ?templateMotifSequenceMatchBeginPositionQ52716117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52716MF_00461118, 1, (STRLEN(?targetMotifMatchCigarQ52716MF_00461118) - STRLEN(REPLACE(?targetMotifMatchCigarQ52716MF_00461118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52716MF_00461118, 1, (STRLEN(?targetMotifMatchCigarQ52716MF_00461118) - STRLEN(REPLACE(?targetMotifMatchCigarQ52716MF_00461118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) .
BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_00461119) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00461a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch135 faldo:location ?templateMotifSequenceMatchRegionQ52716136 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52716138 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ52716MF_00461131 .
?templateMotifSequenceMatchRegionQ52716136 faldo:begin ?templateMotifSequenceMatchBeginQ52716137 .
?templateMotifSequenceMatchBeginQ52716137 faldo:position ?templateMotifSequenceMatchBeginPositionQ52716132 ;
faldo:reference isoform:Q52716-1 .
?templateMotifSequenceProfileAlignmentOperationQ52716138 edam:has_input signature:MF_00461 ;
rdf:type edam:operation_0300 .
?targetMotifMatch139 faldo:location ?targetMotifMatchRegionMatch140 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00461142 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ52716MF_00461133 .
?targetMotifMatchRegionMatch140 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00461141 .
?targetMotifMatchRegionMatchBeginMF_00461141 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00461134 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00461142 edam:has_input signature:MF_00461 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52716MF_00461131, 1, (STRLEN(?templateMotifCigarQ52716MF_00461131) - STRLEN(REPLACE(?templateMotifCigarQ52716MF_00461131, CONCAT('^(?:-*[^-]){', STR(((420 - ?templateMotifSequenceMatchBeginPositionQ52716132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52716MF_00461133, 1, (STRLEN(?targetMotifMatchCigarQ52716MF_00461133) - STRLEN(REPLACE(?targetMotifMatchCigarQ52716MF_00461133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52716MF_00461133, 1, (STRLEN(?targetMotifMatchCigarQ52716MF_00461133) - STRLEN(REPLACE(?targetMotifMatchCigarQ52716MF_00461133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) .
BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_00461134) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t145) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00461a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch150 faldo:location ?templateMotifSequenceMatchRegionQ52716151 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52716153 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ52716MF_00461146 .
?templateMotifSequenceMatchRegionQ52716151 faldo:begin ?templateMotifSequenceMatchBeginQ52716152 .
?templateMotifSequenceMatchBeginQ52716152 faldo:position ?templateMotifSequenceMatchBeginPositionQ52716147 ;
faldo:reference isoform:Q52716-1 .
?templateMotifSequenceProfileAlignmentOperationQ52716153 edam:has_input signature:MF_00461 ;
rdf:type edam:operation_0300 .
?targetMotifMatch154 faldo:location ?targetMotifMatchRegionMatch155 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00461157 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ52716MF_00461148 .
?targetMotifMatchRegionMatch155 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00461156 .
?targetMotifMatchRegionMatchBeginMF_00461156 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00461149 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00461157 edam:has_input signature:MF_00461 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52716MF_00461146, 1, (STRLEN(?templateMotifCigarQ52716MF_00461146) - STRLEN(REPLACE(?templateMotifCigarQ52716MF_00461146, CONCAT('^(?:-*[^-]){', STR(((423 - ?templateMotifSequenceMatchBeginPositionQ52716147) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52716MF_00461148, 1, (STRLEN(?targetMotifMatchCigarQ52716MF_00461148) - STRLEN(REPLACE(?targetMotifMatchCigarQ52716MF_00461148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52716MF_00461148, 1, (STRLEN(?targetMotifMatchCigarQ52716MF_00461148) - STRLEN(REPLACE(?targetMotifMatchCigarQ52716MF_00461148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) .
BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_00461149) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs1t160) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00461a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch165 faldo:location ?templateMotifSequenceMatchRegionQ52716166 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52716168 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ52716MF_00461161 .
?templateMotifSequenceMatchRegionQ52716166 faldo:begin ?templateMotifSequenceMatchBeginQ52716167 .
?templateMotifSequenceMatchBeginQ52716167 faldo:position ?templateMotifSequenceMatchBeginPositionQ52716162 ;
faldo:reference isoform:Q52716-1 .
?templateMotifSequenceProfileAlignmentOperationQ52716168 edam:has_input signature:MF_00461 ;
rdf:type edam:operation_0300 .
?targetMotifMatch169 faldo:location ?targetMotifMatchRegionMatch170 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00461172 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ52716MF_00461163 .
?targetMotifMatchRegionMatch170 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00461171 .
?targetMotifMatchRegionMatchBeginMF_00461171 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00461164 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00461172 edam:has_input signature:MF_00461 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52716MF_00461161, 1, (STRLEN(?templateMotifCigarQ52716MF_00461161) - STRLEN(REPLACE(?templateMotifCigarQ52716MF_00461161, CONCAT('^(?:-*[^-]){', STR(((426 - ?templateMotifSequenceMatchBeginPositionQ52716162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52716MF_00461163, 1, (STRLEN(?targetMotifMatchCigarQ52716MF_00461163) - STRLEN(REPLACE(?targetMotifMatchCigarQ52716MF_00461163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52716MF_00461163, 1, (STRLEN(?targetMotifMatchCigarQ52716MF_00461163) - STRLEN(REPLACE(?targetMotifMatchCigarQ52716MF_00461163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) .
BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_00461164) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs1t175) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00461a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch180 faldo:location ?templateMotifSequenceMatchRegionQ52716181 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52716183 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ52716MF_00461176 .
?templateMotifSequenceMatchRegionQ52716181 faldo:begin ?templateMotifSequenceMatchBeginQ52716182 .
?templateMotifSequenceMatchBeginQ52716182 faldo:position ?templateMotifSequenceMatchBeginPositionQ52716177 ;
faldo:reference isoform:Q52716-1 .
?templateMotifSequenceProfileAlignmentOperationQ52716183 edam:has_input signature:MF_00461 ;
rdf:type edam:operation_0300 .
?targetMotifMatch184 faldo:location ?targetMotifMatchRegionMatch185 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00461187 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ52716MF_00461178 .
?targetMotifMatchRegionMatch185 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00461186 .
?targetMotifMatchRegionMatchBeginMF_00461186 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00461179 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00461187 edam:has_input signature:MF_00461 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52716MF_00461176, 1, (STRLEN(?templateMotifCigarQ52716MF_00461176) - STRLEN(REPLACE(?templateMotifCigarQ52716MF_00461176, CONCAT('^(?:-*[^-]){', STR(((430 - ?templateMotifSequenceMatchBeginPositionQ52716177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52716MF_00461178, 1, (STRLEN(?targetMotifMatchCigarQ52716MF_00461178) - STRLEN(REPLACE(?targetMotifMatchCigarQ52716MF_00461178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52716MF_00461178, 1, (STRLEN(?targetMotifMatchCigarQ52716MF_00461178) - STRLEN(REPLACE(?targetMotifMatchCigarQ52716MF_00461178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), '')))), '[^-]', ''))) AS ?step2189) .
BIND(((?step2189 + ?targetMotifMatchRegionMatchBeginPositionMF_00461179) - 1) AS ?thisPositionOn68) .
BIND(?thisPositionOn68 AS ?thisPositionOn69) .
BIND(?this AS ?pfs1t190) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse66) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00461a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(?this AS ?case2) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:31989 .
BIND(?this AS ?case3) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:31989 .
})) .
BIND(?this AS ?case4) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon191 {taxon:561 taxon:620 taxon:590}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon191 .
BIND(?this AS ?case5) .
BIND(URI(CONCAT(STR(?this), '#MF_00461a6')) AS ?name6) .
BIND(URI(CONCAT(STR(?this), '#MF_00461a7')) AS ?name7) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon192 {taxon:561 taxon:620 taxon:590}
?thisOrganism rdfs:subClassOf+ ?supertaxon192 .
})) .
BIND(?this AS ?case8) .
BIND(URI(CONCAT(STR(?this), '#MF_00461a9')) AS ?name9) .
BIND(URI(CONCAT(STR(?this), '#MF_00461a10')) AS ?name10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
FILTER (! (EXISTS {
VALUES ?supertaxon193 {taxon:561 taxon:620 taxon:590}
?thisOrganism rdfs:subClassOf+ ?supertaxon193 .
})) .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:31989 .
})) .
} UNION {
?this up:organism ?thisOrganism .
{
?this up:proteome |
| http://purl.uniprot.org/unirules/MF_00461 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00461#construct |