| http://purl.uniprot.org/unirules/MF_00465#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:187249 up:source unirule:MF_00465 .
_:187250 up:source unirule:MF_00465 .
_:187251 up:fullName 'S-adenosylmethionine decarboxylase beta chain' ;
rdf:type up:Structured_Name .
_:187252 up:source unirule:MF_00465 .
_:187253 up:fullName 'S-adenosylmethionine decarboxylase alpha chain' ;
rdf:type up:Structured_Name .
_:187254 up:source unirule:MF_00465 .
_:187255 up:source unirule:MF_00465 .
_:187256 up:source unirule:MF_00465 .
_:187257 up:source unirule:MF_00465 .
_:187258 up:source unirule:MF_00465 .
_:187259 up:source unirule:MF_00465 .
_:187260 up:source unirule:MF_00465 .
_:187261 up:source unirule:MF_00465 .
_:187262 up:source unirule:MF_00465 .
_:187263 up:source unirule:MF_00465 .
_:187264 up:source unirule:MF_00465 .
_:187265 up:source unirule:MF_00465 .
_:187266 up:source unirule:MF_00465 .
_:187267 up:source unirule:MF_00465 .
_:187268 up:source unirule:MF_00465 .
_:187269 up:source unirule:MF_00465 .
_:187270 up:source unirule:MF_00465 .
_:187271 up:source unirule:MF_00465 .
_:187272 up:source unirule:MF_00465 .
_:187273 up:source unirule:MF_00465 .
_:187274 up:source unirule:MF_00465 .
_:187275 up:source unirule:MF_00465 .
_:187276 up:source unirule:MF_00465 .
_:187277 up:source unirule:MF_00465 .
_:187278 up:source unirule:MF_00465 .
_:187279 up:source unirule:MF_00465 .
_:187280 up:source unirule:MF_00465 .
_:187281 up:source unirule:MF_00465 .
?this up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation11 ;
up:classifiedWith GO:0004014 ,
GO:0006596 ,
GO:0008295 ,
keyword:210 ,
keyword:456 ,
keyword:620 ,
keyword:670 ,
keyword:68 ,
keyword:704 ,
keyword:745 ,
keyword:865 ,
keyword:949 ;
up:component ?namedpart1 ,
?namedpart2 ;
up:precursor "true"^^xsd:boolean ;
up:recommendedName ?name0 .
?name0 up:ecName '4.1.1.50' ;
up:fullName 'S-adenosylmethionine decarboxylase proenzyme' ;
up:shortName 'AdoMetDC' ,
'SAMDC' ;
rdf:type up:Structured_Name .
?namedpart1 up:recommendedName _:187251 .
?namedpart2 up:recommendedName _:187253 .
?gene3 skos:prefLabel 'speD' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:15361 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 pyruvoyl group covalently per subunit.' .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Amine and polyamine biosynthesis; S-adenosylmethioninamine biosynthesis; S-adenosylmethioninamine from S-adenosyl-L-methionine: step 1/1.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Heterooctamer of four alpha and four beta chains arranged as a tetramer of alpha/beta heterodimers.' .
?annotation10 a up:PTM_Annotation ;
rdfs:comment 'Is synthesized initially as an inactive proenzyme. Formation of the active enzyme involves a self-maturation process in which the active site pyruvoyl group is generated from an internal serine residue via an autocatalytic post-translational modification. Two non-identical subunits are generated from the proenzyme in this reaction, and the pyruvate is formed at the N-terminus of the alpha chain, which is derived from the carboxyl end of the proenzyme. The post-translation cleavage follows an unusual pathway, termed non-hydrolytic serinolysis, in which the side chain hydroxyl group of the serine supplies its oxygen atom to form the C-terminus of the beta chain, while the remainder of the serine residue undergoes an oxidative deamination to produce ammonia and the pyruvoyl group blocking the N-terminus of the alpha chain.' .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the prokaryotic AdoMetDC family. Type 2 subfamily.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'S-adenosylmethionine decarboxylase beta chain' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'S-adenosylmethionine decarboxylase alpha chain' .
?pfsb20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Schiff-base intermediate with substrate; via pyruvic acid' .
?pfsb26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor; for processing activity' .
?pfsb32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor; for catalytic activity' .
?pfsb38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Cleavage (non-hydrolytic); by autolysis' .
?pfsb44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Pyruvic acid (Ser); by autocatalysis' .
?pfsb50 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
_:187282 a rdf:Statement ;
up:attribution _:187249 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:187283 a rdf:Statement ;
up:attribution _:187250 ;
rdf:subject ?this ;
rdf:predicate up:precursor ;
rdf:object "true"^^xsd:boolean .
_:187284 a rdf:Statement ;
up:attribution _:187252 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart1 .
_:187285 a rdf:Statement ;
up:attribution _:187254 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart2 .
_:187286 a rdf:Statement ;
up:attribution _:187255 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:187287 a rdf:Statement ;
up:attribution _:187256 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:187288 a rdf:Statement ;
up:attribution _:187257 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:187289 a rdf:Statement ;
up:attribution _:187258 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:187290 a rdf:Statement ;
up:attribution _:187259 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:187291 a rdf:Statement ;
up:attribution _:187260 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:187292 a rdf:Statement ;
up:attribution _:187261 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:187293 a rdf:Statement ;
up:attribution _:187262 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:187294 a rdf:Statement ;
up:attribution _:187263 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:68 .
_:187295 a rdf:Statement ;
up:attribution _:187264 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:210 .
_:187296 a rdf:Statement ;
up:attribution _:187265 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:187297 a rdf:Statement ;
up:attribution _:187266 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:620 .
_:187298 a rdf:Statement ;
up:attribution _:187267 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:670 .
_:187299 a rdf:Statement ;
up:attribution _:187268 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:187300 a rdf:Statement ;
up:attribution _:187269 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:704 .
_:187301 a rdf:Statement ;
up:attribution _:187270 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:745 .
_:187302 a rdf:Statement ;
up:attribution _:187271 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:865 .
_:187303 a rdf:Statement ;
up:attribution _:187272 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004014 .
_:187304 a rdf:Statement ;
up:attribution _:187273 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006596 .
_:187305 a rdf:Statement ;
up:attribution _:187274 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008295 .
_:187306 a rdf:Statement ;
up:source unirule:MF_00465 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:187307 a rdf:Statement ;
up:attribution _:187275 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:187308 a rdf:Statement ;
up:source unirule:MF_00465 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:187309 a rdf:Statement ;
up:attribution _:187276 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:187310 a rdf:Statement ;
up:source unirule:MF_00465 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:187311 a rdf:Statement ;
up:attribution _:187277 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:187312 a rdf:Statement ;
up:source unirule:MF_00465 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:187313 a rdf:Statement ;
up:attribution _:187278 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:187314 a rdf:Statement ;
up:source unirule:MF_00465 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:187315 a rdf:Statement ;
up:attribution _:187279 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:187316 a rdf:Statement ;
up:source unirule:MF_00465 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:187317 a rdf:Statement ;
up:attribution _:187280 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:187318 a rdf:Statement ;
up:source unirule:MF_00465 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:187319 a rdf:Statement ;
up:attribution _:187281 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00465
#Rule MF_00465 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
VALUES ?supertaxon54 {taxon:1239 taxon:1236}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00465 .
?thisOrganism rdfs:subClassOf+ ?supertaxon54 .
BIND(URI(CONCAT(STR(?this), '#MF_00465a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00465a1')) AS ?namedpart1) .
BIND(URI(CONCAT(STR(?this), '#MF_00465a2')) AS ?namedpart2) .
BIND(URI(CONCAT(STR(?this), '#MF_00465a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00465a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00465a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00465a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00465a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_00465a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_00465a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch59 faldo:location ?templateMotifSequenceMatchRegionP0A7F660 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7F662 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7F6MF_0046555 .
?templateMotifSequenceMatchRegionP0A7F660 faldo:begin ?templateMotifSequenceMatchBeginP0A7F661 .
?templateMotifSequenceMatchBeginP0A7F661 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7F656 ;
faldo:reference isoform:P0A7F6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7F662 edam:has_input signature:MF_00465 ;
rdf:type edam:operation_0300 .
?targetMotifMatch63 faldo:location ?targetMotifMatchRegionMatch64 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0046566 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7F6MF_0046557 .
?targetMotifMatchRegionMatch64 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0046565 .
?targetMotifMatchRegionMatchBeginMF_0046565 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0046558 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0046566 edam:has_input signature:MF_00465 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7F6MF_0046555, 1, (STRLEN(?templateMotifCigarP0A7F6MF_0046555) - STRLEN(REPLACE(?templateMotifCigarP0A7F6MF_0046555, CONCAT('^(?:-*[^-]){', STR(((111 - ?templateMotifSequenceMatchBeginPositionP0A7F656) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7F6MF_0046557, 1, (STRLEN(?targetMotifMatchCigarP0A7F6MF_0046557) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7F6MF_0046557, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7F6MF_0046557, 1, (STRLEN(?targetMotifMatchCigarP0A7F6MF_0046557) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7F6MF_0046557, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) .
BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0046558) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((BOUND(?thisPositionOn16) && BOUND(?thisPositionOn17))) .
BIND(URI(CONCAT(STR(?this), '#MF_00465a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch74 faldo:location ?templateMotifSequenceMatchRegionP0A7F675 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7F677 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7F6MF_0046570 .
?templateMotifSequenceMatchRegionP0A7F675 faldo:begin ?templateMotifSequenceMatchBeginP0A7F676 .
?templateMotifSequenceMatchBeginP0A7F676 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7F671 ;
faldo:reference isoform:P0A7F6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7F677 edam:has_input signature:MF_00465 ;
rdf:type edam:operation_0300 .
?targetMotifMatch78 faldo:location ?targetMotifMatchRegionMatch79 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0046581 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7F6MF_0046572 .
?targetMotifMatchRegionMatch79 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0046580 .
?targetMotifMatchRegionMatchBeginMF_0046580 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0046573 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0046581 edam:has_input signature:MF_00465 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7F6MF_0046570, 1, (STRLEN(?templateMotifCigarP0A7F6MF_0046570) - STRLEN(REPLACE(?templateMotifCigarP0A7F6MF_0046570, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionP0A7F671) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7F6MF_0046572, 1, (STRLEN(?targetMotifMatchCigarP0A7F6MF_0046572) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7F6MF_0046572, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7F6MF_0046572, 1, (STRLEN(?targetMotifMatchCigarP0A7F6MF_0046572) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7F6MF_0046572, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) .
BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0046573) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) .
FILTER ((BOUND(?thisPositionOn22) && BOUND(?thisPositionOn23))) .
BIND(URI(CONCAT(STR(?this), '#MF_00465a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch89 faldo:location ?templateMotifSequenceMatchRegionP0A7F690 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7F692 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7F6MF_0046585 .
?templateMotifSequenceMatchRegionP0A7F690 faldo:begin ?templateMotifSequenceMatchBeginP0A7F691 .
?templateMotifSequenceMatchBeginP0A7F691 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7F686 ;
faldo:reference isoform:P0A7F6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7F692 edam:has_input signature:MF_00465 ;
rdf:type edam:operation_0300 .
?targetMotifMatch93 faldo:location ?targetMotifMatchRegionMatch94 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0046596 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7F6MF_0046587 .
?targetMotifMatchRegionMatch94 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0046595 .
?targetMotifMatchRegionMatchBeginMF_0046595 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0046588 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0046596 edam:has_input signature:MF_00465 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7F6MF_0046585, 1, (STRLEN(?templateMotifCigarP0A7F6MF_0046585) - STRLEN(REPLACE(?templateMotifCigarP0A7F6MF_0046585, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionP0A7F686) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7F6MF_0046587, 1, (STRLEN(?targetMotifMatchCigarP0A7F6MF_0046587) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7F6MF_0046587, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7F6MF_0046587, 1, (STRLEN(?targetMotifMatchCigarP0A7F6MF_0046587) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7F6MF_0046587, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) .
BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0046588) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00465a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch104 faldo:location ?templateMotifSequenceMatchRegionP0A7F6105 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7F6107 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7F6MF_00465100 .
?templateMotifSequenceMatchRegionP0A7F6105 faldo:begin ?templateMotifSequenceMatchBeginP0A7F6106 .
?templateMotifSequenceMatchBeginP0A7F6106 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7F6101 ;
faldo:reference isoform:P0A7F6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7F6107 edam:has_input signature:MF_00465 ;
rdf:type edam:operation_0300 .
?targetMotifMatch108 faldo:location ?targetMotifMatchRegionMatch109 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00465111 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7F6MF_00465102 .
?targetMotifMatchRegionMatch109 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00465110 .
?targetMotifMatchRegionMatchBeginMF_00465110 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00465103 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00465111 edam:has_input signature:MF_00465 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7F6MF_00465100, 1, (STRLEN(?templateMotifCigarP0A7F6MF_00465100) - STRLEN(REPLACE(?templateMotifCigarP0A7F6MF_00465100, CONCAT('^(?:-*[^-]){', STR(((117 - ?templateMotifSequenceMatchBeginPositionP0A7F6101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7F6MF_00465102, 1, (STRLEN(?targetMotifMatchCigarP0A7F6MF_00465102) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7F6MF_00465102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7F6MF_00465102, 1, (STRLEN(?targetMotifMatchCigarP0A7F6MF_00465102) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7F6MF_00465102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) .
BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_00465103) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00465a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch119 faldo:location ?templateMotifSequenceMatchRegionP0A7F6120 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7F6122 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7F6MF_00465115 .
?templateMotifSequenceMatchRegionP0A7F6120 faldo:begin ?templateMotifSequenceMatchBeginP0A7F6121 .
?templateMotifSequenceMatchBeginP0A7F6121 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7F6116 ;
faldo:reference isoform:P0A7F6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7F6122 edam:has_input signature:MF_00465 ;
rdf:type edam:operation_0300 .
?targetMotifMatch123 faldo:location ?targetMotifMatchRegionMatch124 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00465126 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7F6MF_00465117 .
?targetMotifMatchRegionMatch124 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00465125 .
?targetMotifMatchRegionMatchBeginMF_00465125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00465118 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00465126 edam:has_input signature:MF_00465 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7F6MF_00465115, 1, (STRLEN(?templateMotifCigarP0A7F6MF_00465115) - STRLEN(REPLACE(?templateMotifCigarP0A7F6MF_00465115, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP0A7F6116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7F6MF_00465117, 1, (STRLEN(?targetMotifMatchCigarP0A7F6MF_00465117) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7F6MF_00465117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7F6MF_00465117, 1, (STRLEN(?targetMotifMatchCigarP0A7F6MF_00465117) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7F6MF_00465117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) .
BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_00465118) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t129) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00465a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionP0A7F6135 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7F6137 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7F6MF_00465130 .
?templateMotifSequenceMatchRegionP0A7F6135 faldo:begin ?templateMotifSequenceMatchBeginP0A7F6136 .
?templateMotifSequenceMatchBeginP0A7F6136 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7F6131 ;
faldo:reference isoform:P0A7F6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7F6137 edam:has_input signature:MF_00465 ;
rdf:type edam:operation_0300 .
?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00465141 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7F6MF_00465132 .
?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00465140 .
?targetMotifMatchRegionMatchBeginMF_00465140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00465133 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00465141 edam:has_input signature:MF_00465 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7F6MF_00465130, 1, (STRLEN(?templateMotifCigarP0A7F6MF_00465130) - STRLEN(REPLACE(?templateMotifCigarP0A7F6MF_00465130, CONCAT('^(?:-*[^-]){', STR(((111 - ?templateMotifSequenceMatchBeginPositionP0A7F6131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7F6MF_00465132, 1, (STRLEN(?targetMotifMatchCigarP0A7F6MF_00465132) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7F6MF_00465132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7F6MF_00465132, 1, (STRLEN(?targetMotifMatchCigarP0A7F6MF_00465132) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7F6MF_00465132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) .
BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_00465133) - 1) AS ?thisPositionOn46) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7F6MF_00465130, 1, (STRLEN(?templateMotifCigarP0A7F6MF_00465130) - STRLEN(REPLACE(?templateMotifCigarP0A7F6MF_00465130, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionP0A7F6131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7F6MF_00465132, 1, (STRLEN(?targetMotifMatchCigarP0A7F6MF_00465132) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7F6MF_00465132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7F6MF_00465132, 1, (STRLEN(?targetMotifMatchCigarP0A7F6MF_00465132) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7F6MF_00465132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_00465133) - 1) AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t146) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, (?thisPositionOn47 - ?thisPositionOn46)) = 'KS')) .
BIND(URI(CONCAT(STR(?this), '#MF_00465a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch151 faldo:location ?templateMotifSequenceMatchRegionP0A7F6152 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7F6154 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7F6MF_00465147 .
?templateMotifSequenceMatchRegionP0A7F6152 faldo:begin ?templateMotifSequenceMatchBeginP0A7F6153 .
?templateMotifSequenceMatchBeginP0A7F6153 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7F6148 ;
faldo:reference isoform:P0A7F6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7F6154 edam:has_input signature:MF_00465 ;
rdf:type edam:operation_0300 .
?targetMotifMatch155 faldo:location ?targetMotifMatchRegionMatch156 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00465158 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7F6MF_00465149 .
?targetMotifMatchRegionMatch156 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00465157 .
?targetMotifMatchRegionMatchBeginMF_00465157 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00465150 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00465158 edam:has_input signature:MF_00465 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7F6MF_00465147, 1, (STRLEN(?templateMotifCigarP0A7F6MF_00465147) - STRLEN(REPLACE(?templateMotifCigarP0A7F6MF_00465147, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionP0A7F6148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7F6MF_00465149, 1, (STRLEN(?targetMotifMatchCigarP0A7F6MF_00465149) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7F6MF_00465149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7F6MF_00465149, 1, (STRLEN(?targetMotifMatchCigarP0A7F6MF_00465149) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7F6MF_00465149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) .
BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_00465150) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t161) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00465a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
}
"xsd:string |
