| http://purl.uniprot.org/unirules/MF_00540#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:210851 up:source unirule:MF_00540 .
_:210852 up:source unirule:MF_00540 .
_:210853 up:source unirule:MF_00540 .
_:210854 up:source unirule:MF_00540 .
_:210855 up:source unirule:MF_00540 .
_:210856 up:source unirule:MF_00540 .
_:210857 up:source unirule:MF_00540 .
_:210858 up:source unirule:MF_00540 .
_:210859 up:source unirule:MF_00540 .
_:210860 up:source unirule:MF_00540 .
_:210861 up:source unirule:MF_00540 .
_:210862 up:source unirule:MF_00540 .
_:210863 up:source unirule:MF_00540 .
_:210864 up:source unirule:MF_00540 .
_:210865 up:source unirule:MF_00540 .
_:210866 up:source unirule:MF_00540 .
_:210867 up:source unirule:MF_00540 .
_:210868 up:source unirule:MF_00540 .
_:210869 up:source unirule:MF_00540 .
_:210870 up:source unirule:MF_00540 .
_:210871 up:source unirule:MF_00540 .
_:210872 up:source unirule:MF_00540 .
_:210873 up:source unirule:MF_00540 .
_:210874 up:source unirule:MF_00540 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0004000 ,
GO:0009168 ,
keyword:378 ,
keyword:546 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.5.4.4' ;
up:fullName 'Adenosine deaminase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Adenosine aminohydrolase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'add' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the hydrolytic deamination of adenosine and 2-deoxyadenosine.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. Adenosine deaminase subfamily.' .
?case9 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?pfs10 up:annotation ?annotation11 ,
?annotation17 ,
?annotation23 ,
?annotation29 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:29105 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:29105 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:29105 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:29105 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf ?molecule46 .
?molecule46 rdfs:label 'substrate' .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf ?molecule54 .
?molecule54 rdfs:label 'substrate' .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf ?molecule62 .
?molecule62 rdfs:label 'substrate' .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
up:ligand ?ligand69 ;
rdf:type up:Binding_Site_Annotation .
?pfsb67 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?ligand69 rdfs:subClassOf ?molecule70 .
?molecule70 rdfs:label 'substrate' .
?pfs73 up:annotation ?annotation74 .
?annotation74 faldo:begin ?pfsb75 ;
faldo:end ?pfse76 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for catalytic activity' .
?pfsb75 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse76 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
_:210875 a rdf:Statement ;
up:attribution _:210851 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:210876 a rdf:Statement ;
up:attribution _:210852 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:210877 a rdf:Statement ;
up:attribution _:210853 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:210878 a rdf:Statement ;
up:attribution _:210854 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:210879 a rdf:Statement ;
up:attribution _:210855 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:210880 a rdf:Statement ;
up:attribution _:210856 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:210881 a rdf:Statement ;
up:attribution _:210857 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:210882 a rdf:Statement ;
up:attribution _:210858 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:210883 a rdf:Statement ;
up:attribution _:210859 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:546 .
_:210884 a rdf:Statement ;
up:attribution _:210860 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004000 .
_:210885 a rdf:Statement ;
up:attribution _:210861 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009168 .
_:210886 a rdf:Statement ;
up:attribution _:210862 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:210887 a rdf:Statement ;
up:attribution _:210863 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:210888 a rdf:Statement ;
up:attribution _:210864 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:210889 a rdf:Statement ;
up:source unirule:MF_00540 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:210890 a rdf:Statement ;
up:attribution _:210865 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:210891 a rdf:Statement ;
up:source unirule:MF_00540 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:210892 a rdf:Statement ;
up:attribution _:210866 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:210893 a rdf:Statement ;
up:source unirule:MF_00540 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:210894 a rdf:Statement ;
up:attribution _:210867 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:210895 a rdf:Statement ;
up:source unirule:MF_00540 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:210896 a rdf:Statement ;
up:attribution _:210868 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:210897 a rdf:Statement ;
up:source unirule:MF_00540 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:210898 a rdf:Statement ;
up:attribution _:210869 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:210899 a rdf:Statement ;
up:source unirule:MF_00540 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:210900 a rdf:Statement ;
up:attribution _:210870 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:210901 a rdf:Statement ;
up:source unirule:MF_00540 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:210902 a rdf:Statement ;
up:attribution _:210871 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:210903 a rdf:Statement ;
up:source unirule:MF_00540 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:210904 a rdf:Statement ;
up:attribution _:210872 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:210905 a rdf:Statement ;
up:source unirule:MF_00540 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:210906 a rdf:Statement ;
up:attribution _:210873 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:210907 a rdf:Statement ;
up:source unirule:MF_00540 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:210908 a rdf:Statement ;
up:attribution _:210874 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00540
#Rule MF_00540 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00540 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00540a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00540a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00540a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00540a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00540a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00540a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch83 faldo:location ?templateMotifSequenceMatchRegionP2233384 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2233386 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22333MF_0054079 .
?templateMotifSequenceMatchRegionP2233384 faldo:begin ?templateMotifSequenceMatchBeginP2233385 .
?templateMotifSequenceMatchBeginP2233385 faldo:position ?templateMotifSequenceMatchBeginPositionP2233380 ;
faldo:reference isoform:P22333-1 .
?templateMotifSequenceProfileAlignmentOperationP2233386 edam:has_input signature:MF_00540 ;
rdf:type edam:operation_0300 .
?targetMotifMatch87 faldo:location ?targetMotifMatchRegionMatch88 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0054090 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22333MF_0054081 .
?targetMotifMatchRegionMatch88 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0054089 .
?targetMotifMatchRegionMatchBeginMF_0054089 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0054082 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0054090 edam:has_input signature:MF_00540 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22333MF_0054079, 1, (STRLEN(?templateMotifCigarP22333MF_0054079) - STRLEN(REPLACE(?templateMotifCigarP22333MF_0054079, CONCAT('^(?:-*[^-]){', STR(((12 - ?templateMotifSequenceMatchBeginPositionP2233380) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22333MF_0054081, 1, (STRLEN(?targetMotifMatchCigarP22333MF_0054081) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_0054081, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22333MF_0054081, 1, (STRLEN(?targetMotifMatchCigarP22333MF_0054081) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_0054081, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0054082) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22333MF_0054079, 1, (STRLEN(?templateMotifCigarP22333MF_0054079) - STRLEN(REPLACE(?templateMotifCigarP22333MF_0054079, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionP2233380) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22333MF_0054081, 1, (STRLEN(?targetMotifMatchCigarP22333MF_0054081) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_0054081, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22333MF_0054081, 1, (STRLEN(?targetMotifMatchCigarP22333MF_0054081) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_0054081, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) .
BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0054082) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22333MF_0054079, 1, (STRLEN(?templateMotifCigarP22333MF_0054079) - STRLEN(REPLACE(?templateMotifCigarP22333MF_0054079, CONCAT('^(?:-*[^-]){', STR(((197 - ?templateMotifSequenceMatchBeginPositionP2233380) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22333MF_0054081, 1, (STRLEN(?targetMotifMatchCigarP22333MF_0054081) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_0054081, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22333MF_0054081, 1, (STRLEN(?targetMotifMatchCigarP22333MF_0054081) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_0054081, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) .
BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0054082) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22333MF_0054079, 1, (STRLEN(?templateMotifCigarP22333MF_0054079) - STRLEN(REPLACE(?templateMotifCigarP22333MF_0054079, CONCAT('^(?:-*[^-]){', STR(((278 - ?templateMotifSequenceMatchBeginPositionP2233380) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22333MF_0054081, 1, (STRLEN(?targetMotifMatchCigarP22333MF_0054081) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_0054081, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22333MF_0054081, 1, (STRLEN(?targetMotifMatchCigarP22333MF_0054081) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_0054081, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0054082) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'D')) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch107 faldo:location ?templateMotifSequenceMatchRegionP22333108 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22333110 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22333MF_00540103 .
?templateMotifSequenceMatchRegionP22333108 faldo:begin ?templateMotifSequenceMatchBeginP22333109 .
?templateMotifSequenceMatchBeginP22333109 faldo:position ?templateMotifSequenceMatchBeginPositionP22333104 ;
faldo:reference isoform:P22333-1 .
?templateMotifSequenceProfileAlignmentOperationP22333110 edam:has_input signature:MF_00540 ;
rdf:type edam:operation_0300 .
?targetMotifMatch111 faldo:location ?targetMotifMatchRegionMatch112 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00540114 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22333MF_00540105 .
?targetMotifMatchRegionMatch112 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00540113 .
?targetMotifMatchRegionMatchBeginMF_00540113 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00540106 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00540114 edam:has_input signature:MF_00540 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22333MF_00540103, 1, (STRLEN(?templateMotifCigarP22333MF_00540103) - STRLEN(REPLACE(?templateMotifCigarP22333MF_00540103, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP22333104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22333MF_00540105, 1, (STRLEN(?targetMotifMatchCigarP22333MF_00540105) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_00540105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22333MF_00540105, 1, (STRLEN(?targetMotifMatchCigarP22333MF_00540105) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_00540105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) .
BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_00540106) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs2t117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00540a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch122 faldo:location ?templateMotifSequenceMatchRegionP22333123 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22333125 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22333MF_00540118 .
?templateMotifSequenceMatchRegionP22333123 faldo:begin ?templateMotifSequenceMatchBeginP22333124 .
?templateMotifSequenceMatchBeginP22333124 faldo:position ?templateMotifSequenceMatchBeginPositionP22333119 ;
faldo:reference isoform:P22333-1 .
?templateMotifSequenceProfileAlignmentOperationP22333125 edam:has_input signature:MF_00540 ;
rdf:type edam:operation_0300 .
?targetMotifMatch126 faldo:location ?targetMotifMatchRegionMatch127 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00540129 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22333MF_00540120 .
?targetMotifMatchRegionMatch127 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00540128 .
?targetMotifMatchRegionMatchBeginMF_00540128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00540121 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00540129 edam:has_input signature:MF_00540 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22333MF_00540118, 1, (STRLEN(?templateMotifCigarP22333MF_00540118) - STRLEN(REPLACE(?templateMotifCigarP22333MF_00540118, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionP22333119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22333MF_00540120, 1, (STRLEN(?targetMotifMatchCigarP22333MF_00540120) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_00540120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22333MF_00540120, 1, (STRLEN(?targetMotifMatchCigarP22333MF_00540120) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_00540120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) .
BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_00540121) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs2t132) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00540a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch137 faldo:location ?templateMotifSequenceMatchRegionP22333138 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22333140 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22333MF_00540133 .
?templateMotifSequenceMatchRegionP22333138 faldo:begin ?templateMotifSequenceMatchBeginP22333139 .
?templateMotifSequenceMatchBeginP22333139 faldo:position ?templateMotifSequenceMatchBeginPositionP22333134 ;
faldo:reference isoform:P22333-1 .
?templateMotifSequenceProfileAlignmentOperationP22333140 edam:has_input signature:MF_00540 ;
rdf:type edam:operation_0300 .
?targetMotifMatch141 faldo:location ?targetMotifMatchRegionMatch142 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00540144 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22333MF_00540135 .
?targetMotifMatchRegionMatch142 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00540143 .
?targetMotifMatchRegionMatchBeginMF_00540143 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00540136 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00540144 edam:has_input signature:MF_00540 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22333MF_00540133, 1, (STRLEN(?templateMotifCigarP22333MF_00540133) - STRLEN(REPLACE(?templateMotifCigarP22333MF_00540133, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionP22333134) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22333MF_00540135, 1, (STRLEN(?targetMotifMatchCigarP22333MF_00540135) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_00540135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22333MF_00540135, 1, (STRLEN(?targetMotifMatchCigarP22333MF_00540135) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_00540135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), '')))), '[^-]', ''))) AS ?step2146) .
BIND(((?step2146 + ?targetMotifMatchRegionMatchBeginPositionMF_00540136) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs2t147) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00540a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch152 faldo:location ?templateMotifSequenceMatchRegionP22333153 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22333155 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22333MF_00540148 .
?templateMotifSequenceMatchRegionP22333153 faldo:begin ?templateMotifSequenceMatchBeginP22333154 .
?templateMotifSequenceMatchBeginP22333154 faldo:position ?templateMotifSequenceMatchBeginPositionP22333149 ;
faldo:reference isoform:P22333-1 .
?templateMotifSequenceProfileAlignmentOperationP22333155 edam:has_input signature:MF_00540 ;
rdf:type edam:operation_0300 .
?targetMotifMatch156 faldo:location ?targetMotifMatchRegionMatch157 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00540159 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22333MF_00540150 .
?targetMotifMatchRegionMatch157 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00540158 .
?targetMotifMatchRegionMatchBeginMF_00540158 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00540151 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00540159 edam:has_input signature:MF_00540 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22333MF_00540148, 1, (STRLEN(?templateMotifCigarP22333MF_00540148) - STRLEN(REPLACE(?templateMotifCigarP22333MF_00540148, CONCAT('^(?:-*[^-]){', STR(((170 - ?templateMotifSequenceMatchBeginPositionP22333149) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22333MF_00540150, 1, (STRLEN(?targetMotifMatchCigarP22333MF_00540150) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_00540150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22333MF_00540150, 1, (STRLEN(?targetMotifMatchCigarP22333MF_00540150) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_00540150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), '')))), '[^-]', ''))) AS ?step2161) .
BIND(((?step2161 + ?targetMotifMatchRegionMatchBeginPositionMF_00540151) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs2t162) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00540a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch167 faldo:location ?templateMotifSequenceMatchRegionP22333168 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22333170 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22333MF_00540163 .
?templateMotifSequenceMatchRegionP22333168 faldo:begin ?templateMotifSequenceMatchBeginP22333169 .
?templateMotifSequenceMatchBeginP22333169 faldo:position ?templateMotifSequenceMatchBeginPositionP22333164 ;
faldo:reference isoform:P22333-1 .
?templateMotifSequenceProfileAlignmentOperationP22333170 edam:has_input signature:MF_00540 ;
rdf:type edam:operation_0300 .
?targetMotifMatch171 faldo:location ?targetMotifMatchRegionMatch172 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00540174 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22333MF_00540165 .
?targetMotifMatchRegionMatch172 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00540173 .
?targetMotifMatchRegionMatchBeginMF_00540173 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00540166 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00540174 edam:has_input signature:MF_00540 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22333MF_00540163, 1, (STRLEN(?templateMotifCigarP22333MF_00540163) - STRLEN(REPLACE(?templateMotifCigarP22333MF_00540163, CONCAT('^(?:-*[^-]){', STR(((279 - ?templateMotifSequenceMatchBeginPositionP22333164) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22333MF_00540165, 1, (STRLEN(?targetMotifMatchCigarP22333MF_00540165) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_00540165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22333MF_00540165, 1, (STRLEN(?targetMotifMatchCigarP22333MF_00540165) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_00540165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) .
BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_00540166) - 1) AS ?thisPositionOn71) .
BIND(?thisPositionOn71 AS ?thisPositionOn72) .
BIND(?this AS ?pfs2t177) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse68) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00540a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch182 faldo:location ?templateMotifSequenceMatchRegionP22333183 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22333185 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22333MF_00540178 .
?templateMotifSequenceMatchRegionP22333183 faldo:begin ?templateMotifSequenceMatchBeginP22333184 .
?templateMotifSequenceMatchBeginP22333184 faldo:position ?templateMotifSequenceMatchBeginPositionP22333179 ;
faldo:reference isoform:P22333-1 .
?templateMotifSequenceProfileAlignmentOperationP22333185 edam:has_input signature:MF_00540 ;
rdf:type edam:operation_0300 .
?targetMotifMatch186 faldo:location ?targetMotifMatchRegionMatch187 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00540189 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22333MF_00540180 .
?targetMotifMatchRegionMatch187 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00540188 .
?targetMotifMatchRegionMatchBeginMF_00540188 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00540181 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00540189 edam:has_input signature:MF_00540 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22333MF_00540178, 1, (STRLEN(?templateMotifCigarP22333MF_00540178) - STRLEN(REPLACE(?templateMotifCigarP22333MF_00540178, CONCAT('^(?:-*[^-]){', STR(((221 - ?templateMotifSequenceMatchBeginPositionP22333179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22333MF_00540180, 1, (STRLEN(?targetMotifMatchCigarP22333MF_00540180) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_00540180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22333MF_00540180, 1, (STRLEN(?targetMotifMatchCigarP22333MF_00540180) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_00540180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) .
BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_00540181) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs2t192) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse76) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00540a74')) AS ?annotation74) .
BIND(?this AS ?pfs73) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag193) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag193, ?UNBOUND_VARIABLE) AS ?case9) .
}
"xsd:string |
