| http://purl.uniprot.org/unirules/MF_00550#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:214288 up:source unirule:MF_00550 .
_:214289 up:source unirule:MF_00550 .
_:214290 up:source unirule:MF_00550 .
_:214291 up:source unirule:MF_00550 .
_:214292 up:source unirule:MF_00550 .
_:214293 up:source unirule:MF_00550 .
_:214294 up:source unirule:MF_00550 .
_:214295 up:source unirule:MF_00550 .
_:214296 up:source unirule:MF_00550 .
_:214297 up:source unirule:MF_00550 .
_:214298 up:source unirule:MF_00550 .
_:214299 up:source unirule:MF_00550 .
_:214300 up:source unirule:MF_00550 .
_:214301 up:source unirule:MF_00550 .
_:214302 up:source unirule:MF_00550 .
_:214303 up:source unirule:MF_00550 .
_:214304 up:source unirule:MF_00550 .
_:214305 up:source unirule:MF_00550 .
_:214306 up:source unirule:MF_00550 .
_:214307 up:source unirule:MF_00550 .
_:214308 up:source unirule:MF_00550 .
_:214309 up:source unirule:MF_00550 .
_:214310 up:source unirule:MF_00550 .
_:214311 up:source unirule:MF_00550 .
_:214312 up:source unirule:MF_00550 .
_:214313 up:source unirule:MF_00550 .
_:214314 up:source unirule:MF_00550 .
_:214315 up:source unirule:MF_00550 .
_:214316 up:source unirule:MF_00550 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation10 ;
up:classifiedWith GO:0005737 ,
GO:0006508 ,
GO:0008270 ,
GO:0043171 ,
GO:0045148 ,
keyword:31 ,
keyword:378 ,
keyword:479 ,
keyword:482 ,
keyword:645 ,
keyword:862 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.4.11.4' ;
up:fullName 'Peptidase T' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Aminotripeptidase' ;
up:shortName 'Tripeptidase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Tripeptide aminopeptidase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'pepT' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Cleaves the N-terminal amino acid of tripeptides.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:enzymeClass .
?annotation7 up:cofactor chebi:29105 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 Zn(2+) ions per subunit.' .
?annotation8 a up:Subcellular_Location_Annotation .
?annotation8li9 up:cellularComponent .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the peptidase M20B family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
rdf:type up:Active_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:29105 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:29105 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:29105 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:29105 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:29105 .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf chebi:29105 .
_:214317 a rdf:Statement ;
up:attribution _:214288 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:214318 a rdf:Statement ;
up:attribution _:214289 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:214319 a rdf:Statement ;
up:attribution _:214290 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:214320 a rdf:Statement ;
up:attribution _:214291 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:214321 a rdf:Statement ;
up:attribution _:214292 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:214322 a rdf:Statement ;
up:attribution _:214293 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:214323 a rdf:Statement ;
up:attribution _:214294 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:214324 a rdf:Statement ;
up:attribution _:214295 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:214325 a rdf:Statement ;
up:attribution _:214296 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:214326 a rdf:Statement ;
up:attribution _:214297 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:214327 a rdf:Statement ;
up:attribution _:214298 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:214328 a rdf:Statement ;
up:attribution _:214299 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:645 .
_:214329 a rdf:Statement ;
up:attribution _:214300 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:31 .
_:214330 a rdf:Statement ;
up:attribution _:214301 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:482 .
_:214331 a rdf:Statement ;
up:attribution _:214302 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:214332 a rdf:Statement ;
up:attribution _:214303 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:214333 a rdf:Statement ;
up:attribution _:214304 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0045148 .
_:214334 a rdf:Statement ;
up:attribution _:214305 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:214335 a rdf:Statement ;
up:attribution _:214306 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006508 .
_:214336 a rdf:Statement ;
up:attribution _:214307 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0043171 .
_:214337 a rdf:Statement ;
up:attribution _:214308 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:214338 a rdf:Statement ;
up:source unirule:MF_00550 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:214339 a rdf:Statement ;
up:attribution _:214309 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:214340 a rdf:Statement ;
up:source unirule:MF_00550 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:214341 a rdf:Statement ;
up:attribution _:214310 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:214342 a rdf:Statement ;
up:source unirule:MF_00550 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:214343 a rdf:Statement ;
up:attribution _:214311 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:214344 a rdf:Statement ;
up:source unirule:MF_00550 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:214345 a rdf:Statement ;
up:attribution _:214312 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:214346 a rdf:Statement ;
up:source unirule:MF_00550 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:214347 a rdf:Statement ;
up:attribution _:214313 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:214348 a rdf:Statement ;
up:source unirule:MF_00550 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:214349 a rdf:Statement ;
up:attribution _:214314 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:214350 a rdf:Statement ;
up:source unirule:MF_00550 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:214351 a rdf:Statement ;
up:attribution _:214315 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:214352 a rdf:Statement ;
up:source unirule:MF_00550 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:214353 a rdf:Statement ;
up:attribution _:214316 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00550
#Rule MF_00550 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00550 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00550a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00550a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00550a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00550a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00550a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00550a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00550a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00550a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch69 faldo:location ?templateMotifSequenceMatchRegionP2631170 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2631172 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP26311MF_0055065 .
?templateMotifSequenceMatchRegionP2631170 faldo:begin ?templateMotifSequenceMatchBeginP2631171 .
?templateMotifSequenceMatchBeginP2631171 faldo:position ?templateMotifSequenceMatchBeginPositionP2631166 ;
faldo:reference isoform:P26311-1 .
?templateMotifSequenceProfileAlignmentOperationP2631172 edam:has_input signature:MF_00550 ;
rdf:type edam:operation_0300 .
?targetMotifMatch73 faldo:location ?targetMotifMatchRegionMatch74 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0055076 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP26311MF_0055067 .
?targetMotifMatchRegionMatch74 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0055075 .
?targetMotifMatchRegionMatchBeginMF_0055075 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0055068 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0055076 edam:has_input signature:MF_00550 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26311MF_0055065, 1, (STRLEN(?templateMotifCigarP26311MF_0055065) - STRLEN(REPLACE(?templateMotifCigarP26311MF_0055065, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionP2631166) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26311MF_0055067, 1, (STRLEN(?targetMotifMatchCigarP26311MF_0055067) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_0055067, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26311MF_0055067, 1, (STRLEN(?targetMotifMatchCigarP26311MF_0055067) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_0055067, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) .
BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0055068) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00550a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch84 faldo:location ?templateMotifSequenceMatchRegionP2631185 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2631187 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP26311MF_0055080 .
?templateMotifSequenceMatchRegionP2631185 faldo:begin ?templateMotifSequenceMatchBeginP2631186 .
?templateMotifSequenceMatchBeginP2631186 faldo:position ?templateMotifSequenceMatchBeginPositionP2631181 ;
faldo:reference isoform:P26311-1 .
?templateMotifSequenceProfileAlignmentOperationP2631187 edam:has_input signature:MF_00550 ;
rdf:type edam:operation_0300 .
?targetMotifMatch88 faldo:location ?targetMotifMatchRegionMatch89 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0055091 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP26311MF_0055082 .
?targetMotifMatchRegionMatch89 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0055090 .
?targetMotifMatchRegionMatchBeginMF_0055090 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0055083 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0055091 edam:has_input signature:MF_00550 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26311MF_0055080, 1, (STRLEN(?templateMotifCigarP26311MF_0055080) - STRLEN(REPLACE(?templateMotifCigarP26311MF_0055080, CONCAT('^(?:-*[^-]){', STR(((173 - ?templateMotifSequenceMatchBeginPositionP2631181) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26311MF_0055082, 1, (STRLEN(?targetMotifMatchCigarP26311MF_0055082) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_0055082, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26311MF_0055082, 1, (STRLEN(?targetMotifMatchCigarP26311MF_0055082) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_0055082, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) .
BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0055083) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00550a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch99 faldo:location ?templateMotifSequenceMatchRegionP26311100 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26311102 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP26311MF_0055095 .
?templateMotifSequenceMatchRegionP26311100 faldo:begin ?templateMotifSequenceMatchBeginP26311101 .
?templateMotifSequenceMatchBeginP26311101 faldo:position ?templateMotifSequenceMatchBeginPositionP2631196 ;
faldo:reference isoform:P26311-1 .
?templateMotifSequenceProfileAlignmentOperationP26311102 edam:has_input signature:MF_00550 ;
rdf:type edam:operation_0300 .
?targetMotifMatch103 faldo:location ?targetMotifMatchRegionMatch104 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00550106 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP26311MF_0055097 .
?targetMotifMatchRegionMatch104 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00550105 .
?targetMotifMatchRegionMatchBeginMF_00550105 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0055098 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00550106 edam:has_input signature:MF_00550 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26311MF_0055095, 1, (STRLEN(?templateMotifCigarP26311MF_0055095) - STRLEN(REPLACE(?templateMotifCigarP26311MF_0055095, CONCAT('^(?:-*[^-]){', STR(((78 - ?templateMotifSequenceMatchBeginPositionP2631196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26311MF_0055097, 1, (STRLEN(?targetMotifMatchCigarP26311MF_0055097) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_0055097, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26311MF_0055097, 1, (STRLEN(?targetMotifMatchCigarP26311MF_0055097) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_0055097, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0055098) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00550a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch114 faldo:location ?templateMotifSequenceMatchRegionP26311115 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26311117 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP26311MF_00550110 .
?templateMotifSequenceMatchRegionP26311115 faldo:begin ?templateMotifSequenceMatchBeginP26311116 .
?templateMotifSequenceMatchBeginP26311116 faldo:position ?templateMotifSequenceMatchBeginPositionP26311111 ;
faldo:reference isoform:P26311-1 .
?templateMotifSequenceProfileAlignmentOperationP26311117 edam:has_input signature:MF_00550 ;
rdf:type edam:operation_0300 .
?targetMotifMatch118 faldo:location ?targetMotifMatchRegionMatch119 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00550121 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP26311MF_00550112 .
?targetMotifMatchRegionMatch119 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00550120 .
?targetMotifMatchRegionMatchBeginMF_00550120 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00550113 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00550121 edam:has_input signature:MF_00550 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26311MF_00550110, 1, (STRLEN(?templateMotifCigarP26311MF_00550110) - STRLEN(REPLACE(?templateMotifCigarP26311MF_00550110, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP26311111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26311MF_00550112, 1, (STRLEN(?targetMotifMatchCigarP26311MF_00550112) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_00550112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26311MF_00550112, 1, (STRLEN(?targetMotifMatchCigarP26311MF_00550112) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_00550112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) .
BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_00550113) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t124) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00550a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch129 faldo:location ?templateMotifSequenceMatchRegionP26311130 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26311132 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP26311MF_00550125 .
?templateMotifSequenceMatchRegionP26311130 faldo:begin ?templateMotifSequenceMatchBeginP26311131 .
?templateMotifSequenceMatchBeginP26311131 faldo:position ?templateMotifSequenceMatchBeginPositionP26311126 ;
faldo:reference isoform:P26311-1 .
?templateMotifSequenceProfileAlignmentOperationP26311132 edam:has_input signature:MF_00550 ;
rdf:type edam:operation_0300 .
?targetMotifMatch133 faldo:location ?targetMotifMatchRegionMatch134 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00550136 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP26311MF_00550127 .
?targetMotifMatchRegionMatch134 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00550135 .
?targetMotifMatchRegionMatchBeginMF_00550135 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00550128 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00550136 edam:has_input signature:MF_00550 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26311MF_00550125, 1, (STRLEN(?templateMotifCigarP26311MF_00550125) - STRLEN(REPLACE(?templateMotifCigarP26311MF_00550125, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP26311126) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26311MF_00550127, 1, (STRLEN(?targetMotifMatchCigarP26311MF_00550127) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_00550127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26311MF_00550127, 1, (STRLEN(?targetMotifMatchCigarP26311MF_00550127) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_00550127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), '')))), '[^-]', ''))) AS ?step2138) .
BIND(((?step2138 + ?targetMotifMatchRegionMatchBeginPositionMF_00550128) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t139) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00550a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch144 faldo:location ?templateMotifSequenceMatchRegionP26311145 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26311147 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP26311MF_00550140 .
?templateMotifSequenceMatchRegionP26311145 faldo:begin ?templateMotifSequenceMatchBeginP26311146 .
?templateMotifSequenceMatchBeginP26311146 faldo:position ?templateMotifSequenceMatchBeginPositionP26311141 ;
faldo:reference isoform:P26311-1 .
?templateMotifSequenceProfileAlignmentOperationP26311147 edam:has_input signature:MF_00550 ;
rdf:type edam:operation_0300 .
?targetMotifMatch148 faldo:location ?targetMotifMatchRegionMatch149 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00550151 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP26311MF_00550142 .
?targetMotifMatchRegionMatch149 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00550150 .
?targetMotifMatchRegionMatchBeginMF_00550150 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00550143 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00550151 edam:has_input signature:MF_00550 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26311MF_00550140, 1, (STRLEN(?templateMotifCigarP26311MF_00550140) - STRLEN(REPLACE(?templateMotifCigarP26311MF_00550140, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionP26311141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26311MF_00550142, 1, (STRLEN(?targetMotifMatchCigarP26311MF_00550142) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_00550142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26311MF_00550142, 1, (STRLEN(?targetMotifMatchCigarP26311MF_00550142) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_00550142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), '')))), '[^-]', ''))) AS ?step2153) .
BIND(((?step2153 + ?targetMotifMatchRegionMatchBeginPositionMF_00550143) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t154) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00550a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch159 faldo:location ?templateMotifSequenceMatchRegionP26311160 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26311162 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP26311MF_00550155 .
?templateMotifSequenceMatchRegionP26311160 faldo:begin ?templateMotifSequenceMatchBeginP26311161 .
?templateMotifSequenceMatchBeginP26311161 faldo:position ?templateMotifSequenceMatchBeginPositionP26311156 ;
faldo:reference isoform:P26311-1 .
?templateMotifSequenceProfileAlignmentOperationP26311162 edam:has_input signature:MF_00550 ;
rdf:type edam:operation_0300 .
?targetMotifMatch163 faldo:location ?targetMotifMatchRegionMatch164 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00550166 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP26311MF_00550157 .
?targetMotifMatchRegionMatch164 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00550165 .
?targetMotifMatchRegionMatchBeginMF_00550165 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00550158 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00550166 edam:has_input signature:MF_00550 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26311MF_00550155, 1, (STRLEN(?templateMotifCigarP26311MF_00550155) - STRLEN(REPLACE(?templateMotifCigarP26311MF_00550155, CONCAT('^(?:-*[^-]){', STR(((196 - ?templateMotifSequenceMatchBeginPositionP26311156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26311MF_00550157, 1, (STRLEN(?targetMotifMatchCigarP26311MF_00550157) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_00550157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26311MF_00550157, 1, (STRLEN(?targetMotifMatchCigarP26311MF_00550157) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_00550157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) .
BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_00550158) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t169) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00550a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch174 faldo:location ?templateMotifSequenceMatchRegionP26311175 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26311177 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP26311MF_00550170 .
?templateMotifSequenceMatchRegionP26311175 faldo:begin ?templateMotifSequenceMatchBeginP26311176 .
?templateMotifSequenceMatchBeginP26311176 faldo:position ?templateMotifSequenceMatchBeginPositionP26311171 ;
faldo:reference isoform:P26311-1 .
?templateMotifSequenceProfileAlignmentOperationP26311177 edam:has_input signature:MF_00550 ;
rdf:type edam:operation_0300 .
?targetMotifMatch178 faldo:location ?targetMotifMatchRegionMatch179 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00550181 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP26311MF_00550172 .
?targetMotifMatchRegionMatch179 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00550180 .
?targetMotifMatchRegionMatchBeginMF_00550180 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00550173 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00550181 edam:has_input signature:MF_00550 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26311MF_00550170, 1, (STRLEN(?templateMotifCigarP26311MF_00550170) - STRLEN(REPLACE(?templateMotifCigarP26311MF_00550170, CONCAT('^(?:-*[^-]){', STR(((379 - ?templateMotifSequenceMatchBeginPositionP26311171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26311MF_00550172, 1, (STRLEN(?targetMotifMatchCigarP26311MF_00550172) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_00550172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26311MF_00550172, 1, (STRLEN(?targetMotifMatchCigarP26311MF_00550172) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_00550172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), '')))), '[^-]', ''))) AS ?step2183) .
BIND(((?step2183 + ?targetMotifMatchRegionMatchBeginPositionMF_00550173) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs1t184) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00550a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
}
"xsd:string |
