| http://purl.uniprot.org/unirules/MF_00568#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:222155 up:source unirule:MF_00568 .
_:222156 up:source unirule:MF_00568 .
_:222157 up:source unirule:MF_00568 .
_:222158 up:source unirule:MF_00568 .
_:222159 up:source unirule:MF_00568 .
_:222160 up:source unirule:MF_00568 .
_:222161 up:source unirule:MF_00568 .
_:222162 up:source unirule:MF_00568 .
_:222163 up:source unirule:MF_00568 .
_:222164 up:source unirule:MF_00568 .
_:222165 up:source unirule:MF_00568 .
_:222166 up:source unirule:MF_00568 .
_:222167 up:source unirule:MF_00568 .
_:222168 up:source unirule:MF_00568 .
_:222169 up:source unirule:MF_00568 .
_:222170 up:source unirule:MF_00568 .
_:222171 up:source unirule:MF_00568 .
_:222172 up:source unirule:MF_00568 .
_:222173 up:source unirule:MF_00568 .
_:222174 up:source unirule:MF_00568 .
_:222175 up:source unirule:MF_00568 .
_:222176 up:source unirule:MF_00568 .
_:222177 up:source unirule:MF_00568 .
_:222178 up:source unirule:MF_00568 .
_:222179 up:source unirule:MF_00568 .
_:222180 up:source unirule:MF_00568 .
_:222181 up:source unirule:MF_00568 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0008987 ,
GO:0009435 ,
keyword:408 ,
keyword:411 ,
keyword:479 ,
keyword:4 ,
keyword:662 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.5.1.72' ;
up:fullName 'Quinolinate synthase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'nadA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:49883 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 [4Fe-4S] cluster per subunit.' .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; NAD(+) biosynthesis; quinolinate from iminoaspartate: step 1/1.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the quinolinate synthase family. Type 2 subfamily.' .
?case8 up:classifiedWith GO:0009507 .
?case9 up:classifiedWith GO:0005737 ,
keyword:963 .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:77875 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:77875 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:49883 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:49883 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:49883 .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:77875 .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf chebi:77875 .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
up:ligand ?ligand63 ;
rdf:type up:Binding_Site_Annotation .
?pfsb61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand63 rdfs:subClassOf chebi:77875 .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
up:ligand ?ligand70 ;
rdf:type up:Binding_Site_Annotation .
?pfsb68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?ligand70 rdfs:subClassOf chebi:77875 .
_:222182 a rdf:Statement ;
up:attribution _:222155 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:222183 a rdf:Statement ;
up:attribution _:222156 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:222184 a rdf:Statement ;
up:attribution _:222157 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:222185 a rdf:Statement ;
up:attribution _:222158 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:222186 a rdf:Statement ;
up:attribution _:222159 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:222187 a rdf:Statement ;
up:attribution _:222160 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:222188 a rdf:Statement ;
up:attribution _:222161 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:222189 a rdf:Statement ;
up:attribution _:222162 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:222190 a rdf:Statement ;
up:attribution _:222163 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:222191 a rdf:Statement ;
up:attribution _:222164 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:222192 a rdf:Statement ;
up:attribution _:222165 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:222193 a rdf:Statement ;
up:attribution _:222166 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:662 .
_:222194 a rdf:Statement ;
up:attribution _:222167 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:222195 a rdf:Statement ;
up:attribution _:222168 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008987 .
_:222196 a rdf:Statement ;
up:attribution _:222169 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009435 .
_:222197 a rdf:Statement ;
up:attribution _:222170 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009507 .
_:222198 a rdf:Statement ;
up:attribution _:222171 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:222199 a rdf:Statement ;
up:attribution _:222172 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:222200 a rdf:Statement ;
up:source unirule:MF_00568 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:222201 a rdf:Statement ;
up:attribution _:222173 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:222202 a rdf:Statement ;
up:source unirule:MF_00568 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:222203 a rdf:Statement ;
up:attribution _:222174 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:222204 a rdf:Statement ;
up:source unirule:MF_00568 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:222205 a rdf:Statement ;
up:attribution _:222175 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:222206 a rdf:Statement ;
up:source unirule:MF_00568 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:222207 a rdf:Statement ;
up:attribution _:222176 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:222208 a rdf:Statement ;
up:source unirule:MF_00568 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:222209 a rdf:Statement ;
up:attribution _:222177 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:222210 a rdf:Statement ;
up:source unirule:MF_00568 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:222211 a rdf:Statement ;
up:attribution _:222178 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:222212 a rdf:Statement ;
up:source unirule:MF_00568 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:222213 a rdf:Statement ;
up:attribution _:222179 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:222214 a rdf:Statement ;
up:source unirule:MF_00568 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:222215 a rdf:Statement ;
up:attribution _:222180 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:222216 a rdf:Statement ;
up:source unirule:MF_00568 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:222217 a rdf:Statement ;
up:attribution _:222181 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00568
#Rule MF_00568 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-06-12
{
VALUES ?supertaxon73 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00568 .
?thisOrganism rdfs:subClassOf+ ?supertaxon73 .
} UNION {
?this rdfs:seeAlso signature:MF_00568 .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
} UNION {
?this up:encodedIn up:Cyanelle .
} UNION {
?this up:encodedIn up:Apicoplast .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
} UNION {
?this up:encodedIn up:Non-photosynthetic_plastid .
}
}
BIND(URI(CONCAT(STR(?this), '#MF_00568a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00568a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00568a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00568a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00568a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00568a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch78 faldo:location ?templateMotifSequenceMatchRegionO5776779 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO5776781 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO57767MF_0056874 .
?templateMotifSequenceMatchRegionO5776779 faldo:begin ?templateMotifSequenceMatchBeginO5776780 .
?templateMotifSequenceMatchBeginO5776780 faldo:position ?templateMotifSequenceMatchBeginPositionO5776775 ;
faldo:reference isoform:O57767-1 .
?templateMotifSequenceProfileAlignmentOperationO5776781 edam:has_input signature:MF_00568 ;
rdf:type edam:operation_0300 .
?targetMotifMatch82 faldo:location ?targetMotifMatchRegionMatch83 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0056885 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO57767MF_0056876 .
?targetMotifMatchRegionMatch83 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0056884 .
?targetMotifMatchRegionMatchBeginMF_0056884 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0056877 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0056885 edam:has_input signature:MF_00568 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO57767MF_0056874, 1, (STRLEN(?templateMotifCigarO57767MF_0056874) - STRLEN(REPLACE(?templateMotifCigarO57767MF_0056874, CONCAT('^(?:-*[^-]){', STR(((109 - ?templateMotifSequenceMatchBeginPositionO5776775) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO57767MF_0056876, 1, (STRLEN(?targetMotifMatchCigarO57767MF_0056876) - STRLEN(REPLACE(?targetMotifMatchCigarO57767MF_0056876, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO57767MF_0056876, 1, (STRLEN(?targetMotifMatchCigarO57767MF_0056876) - STRLEN(REPLACE(?targetMotifMatchCigarO57767MF_0056876, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) .
BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0056877) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO57767MF_0056874, 1, (STRLEN(?templateMotifCigarO57767MF_0056874) - STRLEN(REPLACE(?templateMotifCigarO57767MF_0056874, CONCAT('^(?:-*[^-]){', STR(((111 - ?templateMotifSequenceMatchBeginPositionO5776775) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO57767MF_0056876, 1, (STRLEN(?targetMotifMatchCigarO57767MF_0056876) - STRLEN(REPLACE(?targetMotifMatchCigarO57767MF_0056876, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO57767MF_0056876, 1, (STRLEN(?targetMotifMatchCigarO57767MF_0056876) - STRLEN(REPLACE(?targetMotifMatchCigarO57767MF_0056876, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0056877) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER (REGEX('Y[VIF]N', SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00568a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch95 faldo:location ?templateMotifSequenceMatchRegionO5776796 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO5776798 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO57767MF_0056891 .
?templateMotifSequenceMatchRegionO5776796 faldo:begin ?templateMotifSequenceMatchBeginO5776797 .
?templateMotifSequenceMatchBeginO5776797 faldo:position ?templateMotifSequenceMatchBeginPositionO5776792 ;
faldo:reference isoform:O57767-1 .
?templateMotifSequenceProfileAlignmentOperationO5776798 edam:has_input signature:MF_00568 ;
rdf:type edam:operation_0300 .
?targetMotifMatch99 faldo:location ?targetMotifMatchRegionMatch100 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00568102 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO57767MF_0056893 .
?targetMotifMatchRegionMatch100 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00568101 .
?targetMotifMatchRegionMatchBeginMF_00568101 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0056894 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00568102 edam:has_input signature:MF_00568 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO57767MF_0056891, 1, (STRLEN(?templateMotifCigarO57767MF_0056891) - STRLEN(REPLACE(?templateMotifCigarO57767MF_0056891, CONCAT('^(?:-*[^-]){', STR(((196 - ?templateMotifSequenceMatchBeginPositionO5776792) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO57767MF_0056893, 1, (STRLEN(?targetMotifMatchCigarO57767MF_0056893) - STRLEN(REPLACE(?targetMotifMatchCigarO57767MF_0056893, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO57767MF_0056893, 1, (STRLEN(?targetMotifMatchCigarO57767MF_0056893) - STRLEN(REPLACE(?targetMotifMatchCigarO57767MF_0056893, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) .
BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0056894) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO57767MF_0056891, 1, (STRLEN(?templateMotifCigarO57767MF_0056891) - STRLEN(REPLACE(?templateMotifCigarO57767MF_0056891, CONCAT('^(?:-*[^-]){', STR(((198 - ?templateMotifSequenceMatchBeginPositionO5776792) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO57767MF_0056893, 1, (STRLEN(?targetMotifMatchCigarO57767MF_0056893) - STRLEN(REPLACE(?targetMotifMatchCigarO57767MF_0056893, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO57767MF_0056893, 1, (STRLEN(?targetMotifMatchCigarO57767MF_0056893) - STRLEN(REPLACE(?targetMotifMatchCigarO57767MF_0056893, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0056894) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)) = 'HPE')) .
BIND(URI(CONCAT(STR(?this), '#MF_00568a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch112 faldo:location ?templateMotifSequenceMatchRegionO57767113 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO57767115 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO57767MF_00568108 .
?templateMotifSequenceMatchRegionO57767113 faldo:begin ?templateMotifSequenceMatchBeginO57767114 .
?templateMotifSequenceMatchBeginO57767114 faldo:position ?templateMotifSequenceMatchBeginPositionO57767109 ;
faldo:reference isoform:O57767-1 .
?templateMotifSequenceProfileAlignmentOperationO57767115 edam:has_input signature:MF_00568 ;
rdf:type edam:operation_0300 .
?targetMotifMatch116 faldo:location ?targetMotifMatchRegionMatch117 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00568119 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO57767MF_00568110 .
?targetMotifMatchRegionMatch117 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00568118 .
?targetMotifMatchRegionMatchBeginMF_00568118 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00568111 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00568119 edam:has_input signature:MF_00568 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO57767MF_00568108, 1, (STRLEN(?templateMotifCigarO57767MF_00568108) - STRLEN(REPLACE(?templateMotifCigarO57767MF_00568108, CONCAT('^(?:-*[^-]){', STR(((83 - ?templateMotifSequenceMatchBeginPositionO57767109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO57767MF_00568110, 1, (STRLEN(?targetMotifMatchCigarO57767MF_00568110) - STRLEN(REPLACE(?targetMotifMatchCigarO57767MF_00568110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO57767MF_00568110, 1, (STRLEN(?targetMotifMatchCigarO57767MF_00568110) - STRLEN(REPLACE(?targetMotifMatchCigarO57767MF_00568110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) .
BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_00568111) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t122) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00568a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch127 faldo:location ?templateMotifSequenceMatchRegionO57767128 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO57767130 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO57767MF_00568123 .
?templateMotifSequenceMatchRegionO57767128 faldo:begin ?templateMotifSequenceMatchBeginO57767129 .
?templateMotifSequenceMatchBeginO57767129 faldo:position ?templateMotifSequenceMatchBeginPositionO57767124 ;
faldo:reference isoform:O57767-1 .
?templateMotifSequenceProfileAlignmentOperationO57767130 edam:has_input signature:MF_00568 ;
rdf:type edam:operation_0300 .
?targetMotifMatch131 faldo:location ?targetMotifMatchRegionMatch132 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00568134 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO57767MF_00568125 .
?targetMotifMatchRegionMatch132 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00568133 .
?targetMotifMatchRegionMatchBeginMF_00568133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00568126 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00568134 edam:has_input signature:MF_00568 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO57767MF_00568123, 1, (STRLEN(?templateMotifCigarO57767MF_00568123) - STRLEN(REPLACE(?templateMotifCigarO57767MF_00568123, CONCAT('^(?:-*[^-]){', STR(((170 - ?templateMotifSequenceMatchBeginPositionO57767124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO57767MF_00568125, 1, (STRLEN(?targetMotifMatchCigarO57767MF_00568125) - STRLEN(REPLACE(?targetMotifMatchCigarO57767MF_00568125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO57767MF_00568125, 1, (STRLEN(?targetMotifMatchCigarO57767MF_00568125) - STRLEN(REPLACE(?targetMotifMatchCigarO57767MF_00568125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) .
BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_00568126) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00568a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch142 faldo:location ?templateMotifSequenceMatchRegionO57767143 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO57767145 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO57767MF_00568138 .
?templateMotifSequenceMatchRegionO57767143 faldo:begin ?templateMotifSequenceMatchBeginO57767144 .
?templateMotifSequenceMatchBeginO57767144 faldo:position ?templateMotifSequenceMatchBeginPositionO57767139 ;
faldo:reference isoform:O57767-1 .
?templateMotifSequenceProfileAlignmentOperationO57767145 edam:has_input signature:MF_00568 ;
rdf:type edam:operation_0300 .
?targetMotifMatch146 faldo:location ?targetMotifMatchRegionMatch147 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00568149 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO57767MF_00568140 .
?targetMotifMatchRegionMatch147 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00568148 .
?targetMotifMatchRegionMatchBeginMF_00568148 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00568141 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00568149 edam:has_input signature:MF_00568 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO57767MF_00568138, 1, (STRLEN(?templateMotifCigarO57767MF_00568138) - STRLEN(REPLACE(?templateMotifCigarO57767MF_00568138, CONCAT('^(?:-*[^-]){', STR(((256 - ?templateMotifSequenceMatchBeginPositionO57767139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO57767MF_00568140, 1, (STRLEN(?targetMotifMatchCigarO57767MF_00568140) - STRLEN(REPLACE(?targetMotifMatchCigarO57767MF_00568140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO57767MF_00568140, 1, (STRLEN(?targetMotifMatchCigarO57767MF_00568140) - STRLEN(REPLACE(?targetMotifMatchCigarO57767MF_00568140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_00568141) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00568a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionO57767158 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO57767160 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO57767MF_00568153 .
?templateMotifSequenceMatchRegionO57767158 faldo:begin ?templateMotifSequenceMatchBeginO57767159 .
?templateMotifSequenceMatchBeginO57767159 faldo:position ?templateMotifSequenceMatchBeginPositionO57767154 ;
faldo:reference isoform:O57767-1 .
?templateMotifSequenceProfileAlignmentOperationO57767160 edam:has_input signature:MF_00568 ;
rdf:type edam:operation_0300 .
?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00568164 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO57767MF_00568155 .
?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00568163 .
?targetMotifMatchRegionMatchBeginMF_00568163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00568156 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00568164 edam:has_input signature:MF_00568 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO57767MF_00568153, 1, (STRLEN(?templateMotifCigarO57767MF_00568153) - STRLEN(REPLACE(?templateMotifCigarO57767MF_00568153, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionO57767154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO57767MF_00568155, 1, (STRLEN(?targetMotifMatchCigarO57767MF_00568155) - STRLEN(REPLACE(?targetMotifMatchCigarO57767MF_00568155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO57767MF_00568155, 1, (STRLEN(?targetMotifMatchCigarO57767MF_00568155) - STRLEN(REPLACE(?targetMotifMatchCigarO57767MF_00568155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) .
BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_00568156) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t167) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00568a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch172 faldo:location ?templateMotifSequenceMatchRegionO57767173 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO57767175 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO57767MF_00568168 .
?templateMotifSequenceMatchRegionO57767173 faldo:begin ?templateMotifSequenceMatchBeginO57767174 .
?templateMotifSequenceMatchBeginO57767174 faldo:position ?templateMotifSequenceMatchBeginPositionO57767169 ;
faldo:reference isoform:O57767-1 .
?templateMotifSequenceProfileAlignmentOperationO57767175 edam:has_input signature:MF_00568 ;
rdf:type edam:operation_0300 .
?targetMotifMatch176 faldo:location ?targetMotifMatchRegionMatch177 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00568179 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO57767MF_00568170 .
?targetMotifMatchRegionMatch177 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00568178 .
?targetMotifMatchRegionMatchBeginMF_00568178 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00568171 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00568179 edam:has_input signature:MF_00568 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO57767MF_00568168, 1, (STRLEN(?templateMotifCigarO57767MF_00568168) - STRLEN(REPLACE(?templateMotifCigarO57767MF_00568168, CONCAT('^(?:-*[^-]){', STR(((38 - ?templateMotifSequenceMatchBeginPositionO57767169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO57767MF_00568170, 1, (STRLEN(?targetMotifMatchCigarO57767MF_00568170) - STRLEN(REPLACE(?targetMotifMatchCigarO57767MF_00568170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO57767MF_00568170, 1, (STRLEN(?targetMotifMatchCigarO57767MF_00568170) - STRLEN(REPLACE(?targetMotifMatchCigarO57767MF_00568170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) .
BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_00568171) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs1t182) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00568a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch187 faldo:location ?templateMotifSequenceMatchRegionO57767188 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO57767190 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO57767MF_00568183 .
?templateMotifSequenceMatchRegionO57767188 faldo:begin ?templateMotifSequenceMatchBeginO57767189 .
?templateMotifSequenceMatchBeginO57767189 faldo:position ?templateMotifSequenceMatchBeginPositionO57767184 ;
faldo:reference isoform:O57767-1 .
?templateMotifSequenceProfileAlignmentOperationO57767190 edam:has_input signature:MF_00568 ;
rdf:type edam:operation_0300 .
?targetMotifMatch191 faldo:location ?targetMotifMatchRegionMatch192 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00568194 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO57767MF_00568185 .
?targetMotifMatchRegionMatch192 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00568193 .
?targetMotifMatchRegionMatchBeginMF_00568193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00568186 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00568194 edam:has_input signature:MF_00568 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO57767MF_00568183, 1, (STRLEN(?templateMotifCigarO57767MF_00568183) - STRLEN(REPLACE(?templateMotifCigarO57767MF_00568183, CONCAT('^(?:-*[^-]){', STR(((126 - ?templateMotifSequenceMatchBeginPositionO57767184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO57767MF_00568185, 1, (STRLEN(?targetMotifMatchCigarO57767MF_00568185) - STRLEN(REPLACE(?targetMotifMatchCigarO57767MF_00568185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO57767MF_00568185, 1, (STRLEN(?targetMotifMatchCigarO57767MF_00568185) - STRLEN(REPLACE(?targetMotifMatchCigarO57767MF_00568185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) .
BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_00568186) - 1) AS ?thisPositionOn64) .
BIND(?thisPositionOn64 AS ?thisPositionOn65) .
BIND(?this AS ?pfs1t197) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00568a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch202 faldo:location ?templateMotifSequenceMatchRegionO57767203 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO57767205 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO57767MF_00568198 .
?templateMotifSequenceMatchRegionO57767203 faldo:begin ?templateMotifSequenceMatchBeginO57767204 .
?templateMotifSequenceMatchBeginO57767204 faldo:position ?templateMotifSequenceMatchBeginPositionO57767199 ;
faldo:reference isoform:O57767-1 .
?templateMotifSequenceProfileAlignmentOperationO57767205 edam:has_input signature:MF_00568 ;
rdf:type edam:operation_0300 .
?targetMotifMatch206 faldo:location ?targetMotifMatchRegionMatch207 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00568209 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO57767MF_00568200 .
?targetMotifMatchRegionMatch207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00568208 .
?targetMotifMatchRegionMatchBeginMF_00568208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00568201 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00568209 edam:has_input signature:MF_00568 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO57767MF_00568198, 1, (STRLEN(?templateMotifCigarO57767MF_00568198) - STRLEN(REPLACE(?templateMotifCigarO57767MF_00568198, CONCAT('^(?:-*[^-]){', STR(((213 - ?templateMotifSequenceMatchBeginPositionO57767199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO57767MF_00568200, 1, (STRLEN(?targetMotifMatchCigarO57767MF_00568200) - STRLEN(REPLACE(?targetMotifMatchCigarO57767MF_00568200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO57767MF_00568200, 1, (STRLEN(?targetMotifMatchCigarO57767MF_00568200) - STRLEN(REPLACE(?targetMotifMatchCigarO57767MF_00568200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) .
BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_00568201) - 1) AS ?thisPositionOn71) .
BIND(?thisPositionOn71 AS ?thisPositionOn72) .
BIND(?this AS ?pfs1t212) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse69) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_00568a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
})) .
BIND(?this AS ?case9) .
}
}
"xsd:string |
