| http://purl.uniprot.org/unirules/MF_00569#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:222713 up:source unirule:MF_00569 .
_:222714 up:source unirule:MF_00569 .
_:222715 up:source unirule:MF_00569 .
_:222716 up:source unirule:MF_00569 .
_:222717 up:source unirule:MF_00569 .
_:222718 up:source unirule:MF_00569 .
_:222719 up:source unirule:MF_00569 .
_:222720 up:source unirule:MF_00569 .
_:222721 up:source unirule:MF_00569 .
_:222722 up:source unirule:MF_00569 .
_:222723 up:source unirule:MF_00569 .
_:222724 up:source unirule:MF_00569 .
_:222725 up:source unirule:MF_00569 .
_:222726 up:source unirule:MF_00569 .
_:222727 up:source unirule:MF_00569 .
_:222728 up:source unirule:MF_00569 .
_:222729 up:source unirule:MF_00569 .
_:222730 up:source unirule:MF_00569 .
_:222731 up:source unirule:MF_00569 .
_:222732 up:source unirule:MF_00569 .
_:222733 up:source unirule:MF_00569 .
_:222734 up:source unirule:MF_00569 .
_:222735 up:source unirule:MF_00569 .
_:222736 up:source unirule:MF_00569 .
_:222737 up:source unirule:MF_00569 .
_:222738 up:source unirule:MF_00569 .
_:222739 up:source unirule:MF_00569 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0005737 ,
GO:0008987 ,
GO:0009435 ,
keyword:408 ,
keyword:411 ,
keyword:479 ,
keyword:4 ,
keyword:662 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.5.1.72' ;
up:fullName 'Quinolinate synthase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'nadA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:49883 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 [4Fe-4S] cluster per subunit.' .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; NAD(+) biosynthesis; quinolinate from iminoaspartate: step 1/1.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the quinolinate synthase family. Type 3 subfamily.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:77875 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:77875 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:49883 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:49883 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:49883 .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:77875 .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf chebi:77875 .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
up:ligand ?ligand63 ;
rdf:type up:Binding_Site_Annotation .
?pfsb61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand63 rdfs:subClassOf chebi:77875 .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
up:ligand ?ligand70 ;
rdf:type up:Binding_Site_Annotation .
?pfsb68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?ligand70 rdfs:subClassOf chebi:77875 .
_:222740 a rdf:Statement ;
up:attribution _:222713 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:222741 a rdf:Statement ;
up:attribution _:222714 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:222742 a rdf:Statement ;
up:attribution _:222715 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:222743 a rdf:Statement ;
up:attribution _:222716 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:222744 a rdf:Statement ;
up:attribution _:222717 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:222745 a rdf:Statement ;
up:attribution _:222718 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:222746 a rdf:Statement ;
up:attribution _:222719 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:222747 a rdf:Statement ;
up:attribution _:222720 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:222748 a rdf:Statement ;
up:attribution _:222721 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:222749 a rdf:Statement ;
up:attribution _:222722 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:222750 a rdf:Statement ;
up:attribution _:222723 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:222751 a rdf:Statement ;
up:attribution _:222724 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:222752 a rdf:Statement ;
up:attribution _:222725 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:222753 a rdf:Statement ;
up:attribution _:222726 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:662 .
_:222754 a rdf:Statement ;
up:attribution _:222727 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:222755 a rdf:Statement ;
up:attribution _:222728 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008987 .
_:222756 a rdf:Statement ;
up:attribution _:222729 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009435 .
_:222757 a rdf:Statement ;
up:attribution _:222730 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:222758 a rdf:Statement ;
up:source unirule:MF_00569 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:222759 a rdf:Statement ;
up:attribution _:222731 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:222760 a rdf:Statement ;
up:source unirule:MF_00569 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:222761 a rdf:Statement ;
up:attribution _:222732 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:222762 a rdf:Statement ;
up:source unirule:MF_00569 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:222763 a rdf:Statement ;
up:attribution _:222733 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:222764 a rdf:Statement ;
up:source unirule:MF_00569 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:222765 a rdf:Statement ;
up:attribution _:222734 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:222766 a rdf:Statement ;
up:source unirule:MF_00569 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:222767 a rdf:Statement ;
up:attribution _:222735 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:222768 a rdf:Statement ;
up:source unirule:MF_00569 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:222769 a rdf:Statement ;
up:attribution _:222736 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:222770 a rdf:Statement ;
up:source unirule:MF_00569 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:222771 a rdf:Statement ;
up:attribution _:222737 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:222772 a rdf:Statement ;
up:source unirule:MF_00569 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:222773 a rdf:Statement ;
up:attribution _:222738 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:222774 a rdf:Statement ;
up:source unirule:MF_00569 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:222775 a rdf:Statement ;
up:attribution _:222739 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00569
#Rule MF_00569 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-06-12
VALUES ?supertaxon73 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00569 .
?thisOrganism rdfs:subClassOf+ ?supertaxon73 .
BIND(URI(CONCAT(STR(?this), '#MF_00569a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00569a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00569a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00569a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00569a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00569a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00569a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch78 faldo:location ?templateMotifSequenceMatchRegionQ9KWZ179 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9KWZ181 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9KWZ1MF_0056974 .
?templateMotifSequenceMatchRegionQ9KWZ179 faldo:begin ?templateMotifSequenceMatchBeginQ9KWZ180 .
?templateMotifSequenceMatchBeginQ9KWZ180 faldo:position ?templateMotifSequenceMatchBeginPositionQ9KWZ175 ;
faldo:reference isoform:Q9KWZ1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9KWZ181 edam:has_input signature:MF_00569 ;
rdf:type edam:operation_0300 .
?targetMotifMatch82 faldo:location ?targetMotifMatchRegionMatch83 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0056985 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9KWZ1MF_0056976 .
?targetMotifMatchRegionMatch83 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0056984 .
?targetMotifMatchRegionMatchBeginMF_0056984 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0056977 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0056985 edam:has_input signature:MF_00569 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9KWZ1MF_0056974, 1, (STRLEN(?templateMotifCigarQ9KWZ1MF_0056974) - STRLEN(REPLACE(?templateMotifCigarQ9KWZ1MF_0056974, CONCAT('^(?:-*[^-]){', STR(((141 - ?templateMotifSequenceMatchBeginPositionQ9KWZ175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9KWZ1MF_0056976, 1, (STRLEN(?targetMotifMatchCigarQ9KWZ1MF_0056976) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KWZ1MF_0056976, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9KWZ1MF_0056976, 1, (STRLEN(?targetMotifMatchCigarQ9KWZ1MF_0056976) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KWZ1MF_0056976, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) .
BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0056977) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9KWZ1MF_0056974, 1, (STRLEN(?templateMotifCigarQ9KWZ1MF_0056974) - STRLEN(REPLACE(?templateMotifCigarQ9KWZ1MF_0056974, CONCAT('^(?:-*[^-]){', STR(((143 - ?templateMotifSequenceMatchBeginPositionQ9KWZ175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9KWZ1MF_0056976, 1, (STRLEN(?targetMotifMatchCigarQ9KWZ1MF_0056976) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KWZ1MF_0056976, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9KWZ1MF_0056976, 1, (STRLEN(?targetMotifMatchCigarQ9KWZ1MF_0056976) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KWZ1MF_0056976, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0056977) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER (REGEX('Y[ARNDCQEGHILKMFPSTWYVBZJUOX]N', SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00569a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch95 faldo:location ?templateMotifSequenceMatchRegionQ9KWZ196 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9KWZ198 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9KWZ1MF_0056991 .
?templateMotifSequenceMatchRegionQ9KWZ196 faldo:begin ?templateMotifSequenceMatchBeginQ9KWZ197 .
?templateMotifSequenceMatchBeginQ9KWZ197 faldo:position ?templateMotifSequenceMatchBeginPositionQ9KWZ192 ;
faldo:reference isoform:Q9KWZ1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9KWZ198 edam:has_input signature:MF_00569 ;
rdf:type edam:operation_0300 .
?targetMotifMatch99 faldo:location ?targetMotifMatchRegionMatch100 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00569102 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9KWZ1MF_0056993 .
?targetMotifMatchRegionMatch100 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00569101 .
?targetMotifMatchRegionMatchBeginMF_00569101 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0056994 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00569102 edam:has_input signature:MF_00569 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9KWZ1MF_0056991, 1, (STRLEN(?templateMotifCigarQ9KWZ1MF_0056991) - STRLEN(REPLACE(?templateMotifCigarQ9KWZ1MF_0056991, CONCAT('^(?:-*[^-]){', STR(((256 - ?templateMotifSequenceMatchBeginPositionQ9KWZ192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9KWZ1MF_0056993, 1, (STRLEN(?targetMotifMatchCigarQ9KWZ1MF_0056993) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KWZ1MF_0056993, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9KWZ1MF_0056993, 1, (STRLEN(?targetMotifMatchCigarQ9KWZ1MF_0056993) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KWZ1MF_0056993, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) .
BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0056994) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9KWZ1MF_0056991, 1, (STRLEN(?templateMotifCigarQ9KWZ1MF_0056991) - STRLEN(REPLACE(?templateMotifCigarQ9KWZ1MF_0056991, CONCAT('^(?:-*[^-]){', STR(((258 - ?templateMotifSequenceMatchBeginPositionQ9KWZ192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9KWZ1MF_0056993, 1, (STRLEN(?targetMotifMatchCigarQ9KWZ1MF_0056993) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KWZ1MF_0056993, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9KWZ1MF_0056993, 1, (STRLEN(?targetMotifMatchCigarQ9KWZ1MF_0056993) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KWZ1MF_0056993, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0056994) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)) = 'HPE')) .
BIND(URI(CONCAT(STR(?this), '#MF_00569a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch112 faldo:location ?templateMotifSequenceMatchRegionQ9KWZ1113 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9KWZ1115 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9KWZ1MF_00569108 .
?templateMotifSequenceMatchRegionQ9KWZ1113 faldo:begin ?templateMotifSequenceMatchBeginQ9KWZ1114 .
?templateMotifSequenceMatchBeginQ9KWZ1114 faldo:position ?templateMotifSequenceMatchBeginPositionQ9KWZ1109 ;
faldo:reference isoform:Q9KWZ1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9KWZ1115 edam:has_input signature:MF_00569 ;
rdf:type edam:operation_0300 .
?targetMotifMatch116 faldo:location ?targetMotifMatchRegionMatch117 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00569119 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9KWZ1MF_00569110 .
?targetMotifMatchRegionMatch117 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00569118 .
?targetMotifMatchRegionMatchBeginMF_00569118 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00569111 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00569119 edam:has_input signature:MF_00569 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9KWZ1MF_00569108, 1, (STRLEN(?templateMotifCigarQ9KWZ1MF_00569108) - STRLEN(REPLACE(?templateMotifCigarQ9KWZ1MF_00569108, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionQ9KWZ1109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9KWZ1MF_00569110, 1, (STRLEN(?targetMotifMatchCigarQ9KWZ1MF_00569110) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KWZ1MF_00569110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9KWZ1MF_00569110, 1, (STRLEN(?targetMotifMatchCigarQ9KWZ1MF_00569110) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KWZ1MF_00569110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) .
BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_00569111) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t122) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00569a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch127 faldo:location ?templateMotifSequenceMatchRegionQ9KWZ1128 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9KWZ1130 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9KWZ1MF_00569123 .
?templateMotifSequenceMatchRegionQ9KWZ1128 faldo:begin ?templateMotifSequenceMatchBeginQ9KWZ1129 .
?templateMotifSequenceMatchBeginQ9KWZ1129 faldo:position ?templateMotifSequenceMatchBeginPositionQ9KWZ1124 ;
faldo:reference isoform:Q9KWZ1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9KWZ1130 edam:has_input signature:MF_00569 ;
rdf:type edam:operation_0300 .
?targetMotifMatch131 faldo:location ?targetMotifMatchRegionMatch132 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00569134 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9KWZ1MF_00569125 .
?targetMotifMatchRegionMatch132 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00569133 .
?targetMotifMatchRegionMatchBeginMF_00569133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00569126 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00569134 edam:has_input signature:MF_00569 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9KWZ1MF_00569123, 1, (STRLEN(?templateMotifCigarQ9KWZ1MF_00569123) - STRLEN(REPLACE(?templateMotifCigarQ9KWZ1MF_00569123, CONCAT('^(?:-*[^-]){', STR(((230 - ?templateMotifSequenceMatchBeginPositionQ9KWZ1124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9KWZ1MF_00569125, 1, (STRLEN(?targetMotifMatchCigarQ9KWZ1MF_00569125) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KWZ1MF_00569125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9KWZ1MF_00569125, 1, (STRLEN(?targetMotifMatchCigarQ9KWZ1MF_00569125) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KWZ1MF_00569125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) .
BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_00569126) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00569a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch142 faldo:location ?templateMotifSequenceMatchRegionQ9KWZ1143 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9KWZ1145 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9KWZ1MF_00569138 .
?templateMotifSequenceMatchRegionQ9KWZ1143 faldo:begin ?templateMotifSequenceMatchBeginQ9KWZ1144 .
?templateMotifSequenceMatchBeginQ9KWZ1144 faldo:position ?templateMotifSequenceMatchBeginPositionQ9KWZ1139 ;
faldo:reference isoform:Q9KWZ1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9KWZ1145 edam:has_input signature:MF_00569 ;
rdf:type edam:operation_0300 .
?targetMotifMatch146 faldo:location ?targetMotifMatchRegionMatch147 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00569149 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9KWZ1MF_00569140 .
?targetMotifMatchRegionMatch147 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00569148 .
?targetMotifMatchRegionMatchBeginMF_00569148 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00569141 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00569149 edam:has_input signature:MF_00569 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9KWZ1MF_00569138, 1, (STRLEN(?templateMotifCigarQ9KWZ1MF_00569138) - STRLEN(REPLACE(?templateMotifCigarQ9KWZ1MF_00569138, CONCAT('^(?:-*[^-]){', STR(((320 - ?templateMotifSequenceMatchBeginPositionQ9KWZ1139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9KWZ1MF_00569140, 1, (STRLEN(?targetMotifMatchCigarQ9KWZ1MF_00569140) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KWZ1MF_00569140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9KWZ1MF_00569140, 1, (STRLEN(?targetMotifMatchCigarQ9KWZ1MF_00569140) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KWZ1MF_00569140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_00569141) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00569a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionQ9KWZ1158 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9KWZ1160 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9KWZ1MF_00569153 .
?templateMotifSequenceMatchRegionQ9KWZ1158 faldo:begin ?templateMotifSequenceMatchBeginQ9KWZ1159 .
?templateMotifSequenceMatchBeginQ9KWZ1159 faldo:position ?templateMotifSequenceMatchBeginPositionQ9KWZ1154 ;
faldo:reference isoform:Q9KWZ1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9KWZ1160 edam:has_input signature:MF_00569 ;
rdf:type edam:operation_0300 .
?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00569164 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9KWZ1MF_00569155 .
?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00569163 .
?targetMotifMatchRegionMatchBeginMF_00569163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00569156 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00569164 edam:has_input signature:MF_00569 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9KWZ1MF_00569153, 1, (STRLEN(?templateMotifCigarQ9KWZ1MF_00569153) - STRLEN(REPLACE(?templateMotifCigarQ9KWZ1MF_00569153, CONCAT('^(?:-*[^-]){', STR(((46 - ?templateMotifSequenceMatchBeginPositionQ9KWZ1154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9KWZ1MF_00569155, 1, (STRLEN(?targetMotifMatchCigarQ9KWZ1MF_00569155) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KWZ1MF_00569155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9KWZ1MF_00569155, 1, (STRLEN(?targetMotifMatchCigarQ9KWZ1MF_00569155) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KWZ1MF_00569155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) .
BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_00569156) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t167) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00569a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch172 faldo:location ?templateMotifSequenceMatchRegionQ9KWZ1173 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9KWZ1175 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9KWZ1MF_00569168 .
?templateMotifSequenceMatchRegionQ9KWZ1173 faldo:begin ?templateMotifSequenceMatchBeginQ9KWZ1174 .
?templateMotifSequenceMatchBeginQ9KWZ1174 faldo:position ?templateMotifSequenceMatchBeginPositionQ9KWZ1169 ;
faldo:reference isoform:Q9KWZ1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9KWZ1175 edam:has_input signature:MF_00569 ;
rdf:type edam:operation_0300 .
?targetMotifMatch176 faldo:location ?targetMotifMatchRegionMatch177 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00569179 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9KWZ1MF_00569170 .
?targetMotifMatchRegionMatch177 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00569178 .
?targetMotifMatchRegionMatchBeginMF_00569178 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00569171 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00569179 edam:has_input signature:MF_00569 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9KWZ1MF_00569168, 1, (STRLEN(?templateMotifCigarQ9KWZ1MF_00569168) - STRLEN(REPLACE(?templateMotifCigarQ9KWZ1MF_00569168, CONCAT('^(?:-*[^-]){', STR(((63 - ?templateMotifSequenceMatchBeginPositionQ9KWZ1169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9KWZ1MF_00569170, 1, (STRLEN(?targetMotifMatchCigarQ9KWZ1MF_00569170) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KWZ1MF_00569170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9KWZ1MF_00569170, 1, (STRLEN(?targetMotifMatchCigarQ9KWZ1MF_00569170) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KWZ1MF_00569170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) .
BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_00569171) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs1t182) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00569a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch187 faldo:location ?templateMotifSequenceMatchRegionQ9KWZ1188 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9KWZ1190 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9KWZ1MF_00569183 .
?templateMotifSequenceMatchRegionQ9KWZ1188 faldo:begin ?templateMotifSequenceMatchBeginQ9KWZ1189 .
?templateMotifSequenceMatchBeginQ9KWZ1189 faldo:position ?templateMotifSequenceMatchBeginPositionQ9KWZ1184 ;
faldo:reference isoform:Q9KWZ1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9KWZ1190 edam:has_input signature:MF_00569 ;
rdf:type edam:operation_0300 .
?targetMotifMatch191 faldo:location ?targetMotifMatchRegionMatch192 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00569194 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9KWZ1MF_00569185 .
?targetMotifMatchRegionMatch192 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00569193 .
?targetMotifMatchRegionMatchBeginMF_00569193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00569186 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00569194 edam:has_input signature:MF_00569 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9KWZ1MF_00569183, 1, (STRLEN(?templateMotifCigarQ9KWZ1MF_00569183) - STRLEN(REPLACE(?templateMotifCigarQ9KWZ1MF_00569183, CONCAT('^(?:-*[^-]){', STR(((162 - ?templateMotifSequenceMatchBeginPositionQ9KWZ1184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9KWZ1MF_00569185, 1, (STRLEN(?targetMotifMatchCigarQ9KWZ1MF_00569185) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KWZ1MF_00569185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9KWZ1MF_00569185, 1, (STRLEN(?targetMotifMatchCigarQ9KWZ1MF_00569185) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KWZ1MF_00569185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) .
BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_00569186) - 1) AS ?thisPositionOn64) .
BIND(?thisPositionOn64 AS ?thisPositionOn65) .
BIND(?this AS ?pfs1t197) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00569a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch202 faldo:location ?templateMotifSequenceMatchRegionQ9KWZ1203 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9KWZ1205 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9KWZ1MF_00569198 .
?templateMotifSequenceMatchRegionQ9KWZ1203 faldo:begin ?templateMotifSequenceMatchBeginQ9KWZ1204 .
?templateMotifSequenceMatchBeginQ9KWZ1204 faldo:position ?templateMotifSequenceMatchBeginPositionQ9KWZ1199 ;
faldo:reference isoform:Q9KWZ1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9KWZ1205 edam:has_input signature:MF_00569 ;
rdf:type edam:operation_0300 .
?targetMotifMatch206 faldo:location ?targetMotifMatchRegionMatch207 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00569209 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9KWZ1MF_00569200 .
?targetMotifMatchRegionMatch207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00569208 .
?targetMotifMatchRegionMatchBeginMF_00569208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00569201 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00569209 edam:has_input signature:MF_00569 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9KWZ1MF_00569198, 1, (STRLEN(?templateMotifCigarQ9KWZ1MF_00569198) - STRLEN(REPLACE(?templateMotifCigarQ9KWZ1MF_00569198, CONCAT('^(?:-*[^-]){', STR(((273 - ?templateMotifSequenceMatchBeginPositionQ9KWZ1199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9KWZ1MF_00569200, 1, (STRLEN(?targetMotifMatchCigarQ9KWZ1MF_00569200) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KWZ1MF_00569200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9KWZ1MF_00569200, 1, (STRLEN(?targetMotifMatchCigarQ9KWZ1MF_00569200) - STRLEN(REPLACE(?targetMotifMatchCigarQ9KWZ1MF_00569200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) .
BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_00569201) - 1) AS ?thisPositionOn71) .
BIND(?thisPositionOn71 AS ?thisPositionOn72) .
BIND(?this AS ?pfs1t212) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse69) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_00569a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
}
"xsd:string |
