| http://purl.uniprot.org/unirules/MF_00673#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:255082 up:source unirule:MF_00673 .
_:255083 up:source unirule:MF_00673 .
_:255084 up:source unirule:MF_00673 .
_:255085 up:source unirule:MF_00673 .
_:255086 up:source unirule:MF_00673 .
_:255087 up:source unirule:MF_00673 .
_:255088 up:source unirule:MF_00673 .
_:255089 up:source unirule:MF_00673 .
_:255090 up:source unirule:MF_00673 .
_:255091 up:source unirule:MF_00673 .
_:255092 up:source unirule:MF_00673 .
_:255093 up:source unirule:MF_00673 .
_:255094 up:source unirule:MF_00673 .
_:255095 up:source unirule:MF_00673 .
_:255096 up:source unirule:MF_00673 .
_:255097 up:source unirule:MF_00673 .
_:255098 up:source unirule:MF_00673 .
_:255099 up:source unirule:MF_00673 .
_:255100 up:source unirule:MF_00673 .
_:255101 up:source unirule:MF_00673 .
_:255102 up:source unirule:MF_00673 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0016746 ,
GO:0160300 ,
keyword:12 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.3.1.-' ;
up:fullName 'Iron-guanylylpyridinol cofactor biosynthesis protein HcgF' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'hcgF' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Product of one of the 7 hmd co-occurring genes (hcg), hcgA-G, which cluster with the [Fe]-hydrogenase-encoding gene hmd and are required for the biosynthesis of the iron-guanylylpyridinol (FeGP) cofactor used by [Fe]-hydrogenase. HcgF catalyzes the transesterification of guanylylpyridinol-AMP produced by HcgE to afford a Cys(HcgF)-S-guanylylpyridinol thioester.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis.' .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the HcgF family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'covalent' .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:234382 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:234382 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:234382 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:234382 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:234382 .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:234382 .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
up:ligand ?ligand60 ;
rdf:type up:Binding_Site_Annotation .
?pfsb58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand60 rdfs:subClassOf chebi:234382 .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
up:ligand ?ligand67 ;
rdf:type up:Binding_Site_Annotation .
?pfsb65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?ligand67 rdfs:subClassOf chebi:234382 .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
up:ligand ?ligand74 ;
rdf:type up:Binding_Site_Annotation .
?pfsb72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?ligand74 rdfs:subClassOf chebi:234382 .
_:255103 a rdf:Statement ;
up:attribution _:255082 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:255104 a rdf:Statement ;
up:attribution _:255083 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:255105 a rdf:Statement ;
up:attribution _:255084 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:255106 a rdf:Statement ;
up:attribution _:255085 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:255107 a rdf:Statement ;
up:attribution _:255086 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:255108 a rdf:Statement ;
up:attribution _:255087 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:255109 a rdf:Statement ;
up:attribution _:255088 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:255110 a rdf:Statement ;
up:attribution _:255089 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:12 .
_:255111 a rdf:Statement ;
up:attribution _:255090 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:255112 a rdf:Statement ;
up:attribution _:255091 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016746 .
_:255113 a rdf:Statement ;
up:attribution _:255092 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0160300 .
_:255114 a rdf:Statement ;
up:source unirule:MF_00673 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:255115 a rdf:Statement ;
up:attribution _:255093 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:255116 a rdf:Statement ;
up:source unirule:MF_00673 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:255117 a rdf:Statement ;
up:attribution _:255094 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:255118 a rdf:Statement ;
up:source unirule:MF_00673 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:255119 a rdf:Statement ;
up:attribution _:255095 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:255120 a rdf:Statement ;
up:source unirule:MF_00673 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:255121 a rdf:Statement ;
up:attribution _:255096 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:255122 a rdf:Statement ;
up:source unirule:MF_00673 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:255123 a rdf:Statement ;
up:attribution _:255097 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:255124 a rdf:Statement ;
up:source unirule:MF_00673 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:255125 a rdf:Statement ;
up:attribution _:255098 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:255126 a rdf:Statement ;
up:source unirule:MF_00673 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:255127 a rdf:Statement ;
up:attribution _:255099 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:255128 a rdf:Statement ;
up:source unirule:MF_00673 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:255129 a rdf:Statement ;
up:attribution _:255100 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:255130 a rdf:Statement ;
up:source unirule:MF_00673 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:255131 a rdf:Statement ;
up:attribution _:255101 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:255132 a rdf:Statement ;
up:source unirule:MF_00673 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:255133 a rdf:Statement ;
up:attribution _:255102 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00673
#Rule MF_00673 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-09-18
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00673 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_00673a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00673a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00673a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00673a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00673a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00673a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch81 faldo:location ?templateMotifSequenceMatchRegionQ5864982 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5864984 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58649MF_0067377 .
?templateMotifSequenceMatchRegionQ5864982 faldo:begin ?templateMotifSequenceMatchBeginQ5864983 .
?templateMotifSequenceMatchBeginQ5864983 faldo:position ?templateMotifSequenceMatchBeginPositionQ5864978 ;
faldo:reference isoform:Q58649-1 .
?templateMotifSequenceProfileAlignmentOperationQ5864984 edam:has_input signature:MF_00673 ;
rdf:type edam:operation_0300 .
?targetMotifMatch85 faldo:location ?targetMotifMatchRegionMatch86 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0067388 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58649MF_0067379 .
?targetMotifMatchRegionMatch86 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0067387 .
?targetMotifMatchRegionMatchBeginMF_0067387 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0067380 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0067388 edam:has_input signature:MF_00673 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58649MF_0067377, 1, (STRLEN(?templateMotifCigarQ58649MF_0067377) - STRLEN(REPLACE(?templateMotifCigarQ58649MF_0067377, CONCAT('^(?:-*[^-]){', STR(((9 - ?templateMotifSequenceMatchBeginPositionQ5864978) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58649MF_0067379, 1, (STRLEN(?targetMotifMatchCigarQ58649MF_0067379) - STRLEN(REPLACE(?targetMotifMatchCigarQ58649MF_0067379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58649MF_0067379, 1, (STRLEN(?targetMotifMatchCigarQ58649MF_0067379) - STRLEN(REPLACE(?targetMotifMatchCigarQ58649MF_0067379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) .
BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0067380) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00673a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch96 faldo:location ?templateMotifSequenceMatchRegionQ5864997 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5864999 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58649MF_0067392 .
?templateMotifSequenceMatchRegionQ5864997 faldo:begin ?templateMotifSequenceMatchBeginQ5864998 .
?templateMotifSequenceMatchBeginQ5864998 faldo:position ?templateMotifSequenceMatchBeginPositionQ5864993 ;
faldo:reference isoform:Q58649-1 .
?templateMotifSequenceProfileAlignmentOperationQ5864999 edam:has_input signature:MF_00673 ;
rdf:type edam:operation_0300 .
?targetMotifMatch100 faldo:location ?targetMotifMatchRegionMatch101 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00673103 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58649MF_0067394 .
?targetMotifMatchRegionMatch101 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00673102 .
?targetMotifMatchRegionMatchBeginMF_00673102 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0067395 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00673103 edam:has_input signature:MF_00673 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58649MF_0067392, 1, (STRLEN(?templateMotifCigarQ58649MF_0067392) - STRLEN(REPLACE(?templateMotifCigarQ58649MF_0067392, CONCAT('^(?:-*[^-]){', STR(((9 - ?templateMotifSequenceMatchBeginPositionQ5864993) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58649MF_0067394, 1, (STRLEN(?targetMotifMatchCigarQ58649MF_0067394) - STRLEN(REPLACE(?targetMotifMatchCigarQ58649MF_0067394, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58649MF_0067394, 1, (STRLEN(?targetMotifMatchCigarQ58649MF_0067394) - STRLEN(REPLACE(?targetMotifMatchCigarQ58649MF_0067394, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) .
BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0067395) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00673a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch111 faldo:location ?templateMotifSequenceMatchRegionQ58649112 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ58649114 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58649MF_00673107 .
?templateMotifSequenceMatchRegionQ58649112 faldo:begin ?templateMotifSequenceMatchBeginQ58649113 .
?templateMotifSequenceMatchBeginQ58649113 faldo:position ?templateMotifSequenceMatchBeginPositionQ58649108 ;
faldo:reference isoform:Q58649-1 .
?templateMotifSequenceProfileAlignmentOperationQ58649114 edam:has_input signature:MF_00673 ;
rdf:type edam:operation_0300 .
?targetMotifMatch115 faldo:location ?targetMotifMatchRegionMatch116 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00673118 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58649MF_00673109 .
?targetMotifMatchRegionMatch116 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00673117 .
?targetMotifMatchRegionMatchBeginMF_00673117 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00673110 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00673118 edam:has_input signature:MF_00673 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58649MF_00673107, 1, (STRLEN(?templateMotifCigarQ58649MF_00673107) - STRLEN(REPLACE(?templateMotifCigarQ58649MF_00673107, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionQ58649108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58649MF_00673109, 1, (STRLEN(?targetMotifMatchCigarQ58649MF_00673109) - STRLEN(REPLACE(?targetMotifMatchCigarQ58649MF_00673109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58649MF_00673109, 1, (STRLEN(?targetMotifMatchCigarQ58649MF_00673109) - STRLEN(REPLACE(?targetMotifMatchCigarQ58649MF_00673109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) .
BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_00673110) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'F')) .
BIND(URI(CONCAT(STR(?this), '#MF_00673a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch126 faldo:location ?templateMotifSequenceMatchRegionQ58649127 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ58649129 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58649MF_00673122 .
?templateMotifSequenceMatchRegionQ58649127 faldo:begin ?templateMotifSequenceMatchBeginQ58649128 .
?templateMotifSequenceMatchBeginQ58649128 faldo:position ?templateMotifSequenceMatchBeginPositionQ58649123 ;
faldo:reference isoform:Q58649-1 .
?templateMotifSequenceProfileAlignmentOperationQ58649129 edam:has_input signature:MF_00673 ;
rdf:type edam:operation_0300 .
?targetMotifMatch130 faldo:location ?targetMotifMatchRegionMatch131 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00673133 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58649MF_00673124 .
?targetMotifMatchRegionMatch131 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00673132 .
?targetMotifMatchRegionMatchBeginMF_00673132 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00673125 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00673133 edam:has_input signature:MF_00673 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58649MF_00673122, 1, (STRLEN(?templateMotifCigarQ58649MF_00673122) - STRLEN(REPLACE(?templateMotifCigarQ58649MF_00673122, CONCAT('^(?:-*[^-]){', STR(((12 - ?templateMotifSequenceMatchBeginPositionQ58649123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58649MF_00673124, 1, (STRLEN(?targetMotifMatchCigarQ58649MF_00673124) - STRLEN(REPLACE(?targetMotifMatchCigarQ58649MF_00673124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58649MF_00673124, 1, (STRLEN(?targetMotifMatchCigarQ58649MF_00673124) - STRLEN(REPLACE(?targetMotifMatchCigarQ58649MF_00673124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) .
BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_00673125) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t136) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00673a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch141 faldo:location ?templateMotifSequenceMatchRegionQ58649142 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ58649144 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58649MF_00673137 .
?templateMotifSequenceMatchRegionQ58649142 faldo:begin ?templateMotifSequenceMatchBeginQ58649143 .
?templateMotifSequenceMatchBeginQ58649143 faldo:position ?templateMotifSequenceMatchBeginPositionQ58649138 ;
faldo:reference isoform:Q58649-1 .
?templateMotifSequenceProfileAlignmentOperationQ58649144 edam:has_input signature:MF_00673 ;
rdf:type edam:operation_0300 .
?targetMotifMatch145 faldo:location ?targetMotifMatchRegionMatch146 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00673148 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58649MF_00673139 .
?targetMotifMatchRegionMatch146 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00673147 .
?targetMotifMatchRegionMatchBeginMF_00673147 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00673140 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00673148 edam:has_input signature:MF_00673 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58649MF_00673137, 1, (STRLEN(?templateMotifCigarQ58649MF_00673137) - STRLEN(REPLACE(?templateMotifCigarQ58649MF_00673137, CONCAT('^(?:-*[^-]){', STR(((20 - ?templateMotifSequenceMatchBeginPositionQ58649138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58649MF_00673139, 1, (STRLEN(?targetMotifMatchCigarQ58649MF_00673139) - STRLEN(REPLACE(?targetMotifMatchCigarQ58649MF_00673139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58649MF_00673139, 1, (STRLEN(?targetMotifMatchCigarQ58649MF_00673139) - STRLEN(REPLACE(?targetMotifMatchCigarQ58649MF_00673139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) .
BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_00673140) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t151) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00673a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch156 faldo:location ?templateMotifSequenceMatchRegionQ58649157 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ58649159 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58649MF_00673152 .
?templateMotifSequenceMatchRegionQ58649157 faldo:begin ?templateMotifSequenceMatchBeginQ58649158 .
?templateMotifSequenceMatchBeginQ58649158 faldo:position ?templateMotifSequenceMatchBeginPositionQ58649153 ;
faldo:reference isoform:Q58649-1 .
?templateMotifSequenceProfileAlignmentOperationQ58649159 edam:has_input signature:MF_00673 ;
rdf:type edam:operation_0300 .
?targetMotifMatch160 faldo:location ?targetMotifMatchRegionMatch161 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00673163 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58649MF_00673154 .
?targetMotifMatchRegionMatch161 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00673162 .
?targetMotifMatchRegionMatchBeginMF_00673162 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00673155 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00673163 edam:has_input signature:MF_00673 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58649MF_00673152, 1, (STRLEN(?templateMotifCigarQ58649MF_00673152) - STRLEN(REPLACE(?templateMotifCigarQ58649MF_00673152, CONCAT('^(?:-*[^-]){', STR(((26 - ?templateMotifSequenceMatchBeginPositionQ58649153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58649MF_00673154, 1, (STRLEN(?targetMotifMatchCigarQ58649MF_00673154) - STRLEN(REPLACE(?targetMotifMatchCigarQ58649MF_00673154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58649MF_00673154, 1, (STRLEN(?targetMotifMatchCigarQ58649MF_00673154) - STRLEN(REPLACE(?targetMotifMatchCigarQ58649MF_00673154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) .
BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_00673155) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t166) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00673a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch171 faldo:location ?templateMotifSequenceMatchRegionQ58649172 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ58649174 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58649MF_00673167 .
?templateMotifSequenceMatchRegionQ58649172 faldo:begin ?templateMotifSequenceMatchBeginQ58649173 .
?templateMotifSequenceMatchBeginQ58649173 faldo:position ?templateMotifSequenceMatchBeginPositionQ58649168 ;
faldo:reference isoform:Q58649-1 .
?templateMotifSequenceProfileAlignmentOperationQ58649174 edam:has_input signature:MF_00673 ;
rdf:type edam:operation_0300 .
?targetMotifMatch175 faldo:location ?targetMotifMatchRegionMatch176 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00673178 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58649MF_00673169 .
?targetMotifMatchRegionMatch176 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00673177 .
?targetMotifMatchRegionMatchBeginMF_00673177 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00673170 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00673178 edam:has_input signature:MF_00673 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58649MF_00673167, 1, (STRLEN(?templateMotifCigarQ58649MF_00673167) - STRLEN(REPLACE(?templateMotifCigarQ58649MF_00673167, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionQ58649168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58649MF_00673169, 1, (STRLEN(?targetMotifMatchCigarQ58649MF_00673169) - STRLEN(REPLACE(?targetMotifMatchCigarQ58649MF_00673169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58649MF_00673169, 1, (STRLEN(?targetMotifMatchCigarQ58649MF_00673169) - STRLEN(REPLACE(?targetMotifMatchCigarQ58649MF_00673169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), '')))), '[^-]', ''))) AS ?step2180) .
BIND(((?step2180 + ?targetMotifMatchRegionMatchBeginPositionMF_00673170) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs1t181) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00673a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch186 faldo:location ?templateMotifSequenceMatchRegionQ58649187 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ58649189 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58649MF_00673182 .
?templateMotifSequenceMatchRegionQ58649187 faldo:begin ?templateMotifSequenceMatchBeginQ58649188 .
?templateMotifSequenceMatchBeginQ58649188 faldo:position ?templateMotifSequenceMatchBeginPositionQ58649183 ;
faldo:reference isoform:Q58649-1 .
?templateMotifSequenceProfileAlignmentOperationQ58649189 edam:has_input signature:MF_00673 ;
rdf:type edam:operation_0300 .
?targetMotifMatch190 faldo:location ?targetMotifMatchRegionMatch191 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00673193 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58649MF_00673184 .
?targetMotifMatchRegionMatch191 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00673192 .
?targetMotifMatchRegionMatchBeginMF_00673192 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00673185 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00673193 edam:has_input signature:MF_00673 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58649MF_00673182, 1, (STRLEN(?templateMotifCigarQ58649MF_00673182) - STRLEN(REPLACE(?templateMotifCigarQ58649MF_00673182, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionQ58649183) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58649MF_00673184, 1, (STRLEN(?targetMotifMatchCigarQ58649MF_00673184) - STRLEN(REPLACE(?targetMotifMatchCigarQ58649MF_00673184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58649MF_00673184, 1, (STRLEN(?targetMotifMatchCigarQ58649MF_00673184) - STRLEN(REPLACE(?targetMotifMatchCigarQ58649MF_00673184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), '')))), '[^-]', ''))) AS ?step2195) .
BIND(((?step2195 + ?targetMotifMatchRegionMatchBeginPositionMF_00673185) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs1t196) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_00673a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch201 faldo:location ?templateMotifSequenceMatchRegionQ58649202 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ58649204 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58649MF_00673197 .
?templateMotifSequenceMatchRegionQ58649202 faldo:begin ?templateMotifSequenceMatchBeginQ58649203 .
?templateMotifSequenceMatchBeginQ58649203 faldo:position ?templateMotifSequenceMatchBeginPositionQ58649198 ;
faldo:reference isoform:Q58649-1 .
?templateMotifSequenceProfileAlignmentOperationQ58649204 edam:has_input signature:MF_00673 ;
rdf:type edam:operation_0300 .
?targetMotifMatch205 faldo:location ?targetMotifMatchRegionMatch206 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00673208 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58649MF_00673199 .
?targetMotifMatchRegionMatch206 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00673207 .
?targetMotifMatchRegionMatchBeginMF_00673207 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00673200 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00673208 edam:has_input signature:MF_00673 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58649MF_00673197, 1, (STRLEN(?templateMotifCigarQ58649MF_00673197) - STRLEN(REPLACE(?templateMotifCigarQ58649MF_00673197, CONCAT('^(?:-*[^-]){', STR(((111 - ?templateMotifSequenceMatchBeginPositionQ58649198) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1209) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58649MF_00673199, 1, (STRLEN(?targetMotifMatchCigarQ58649MF_00673199) - STRLEN(REPLACE(?targetMotifMatchCigarQ58649MF_00673199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58649MF_00673199, 1, (STRLEN(?targetMotifMatchCigarQ58649MF_00673199) - STRLEN(REPLACE(?targetMotifMatchCigarQ58649MF_00673199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), '')))), '[^-]', ''))) AS ?step2210) .
BIND(((?step2210 + ?targetMotifMatchRegionMatchBeginPositionMF_00673200) - 1) AS ?thisPositionOn68) .
BIND(?thisPositionOn68 AS ?thisPositionOn69) .
BIND(?this AS ?pfs1t211) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse66) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'A')) .
BIND(URI(CONCAT(STR(?this), '#MF_00673a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch216 faldo:location ?templateMotifSequenceMatchRegionQ58649217 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ58649219 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58649MF_00673212 .
?templateMotifSequenceMatchRegionQ58649217 faldo:begin ?templateMotifSequenceMatchBeginQ58649218 .
?templateMotifSequenceMatchBeginQ58649218 faldo:position ?templateMotifSequenceMatchBeginPositionQ58649213 ;
faldo:reference isoform:Q58649-1 .
?templateMotifSequenceProfileAlignmentOperationQ58649219 edam:has_input signature:MF_00673 ;
rdf:type edam:operation_0300 .
?targetMotifMatch220 faldo:location ?targetMotifMatchRegionMatch221 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00673223 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58649MF_00673214 .
?targetMotifMatchRegionMatch221 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00673222 .
?targetMotifMatchRegionMatchBeginMF_00673222 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00673215 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00673223 edam:has_input signature:MF_00673 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58649MF_00673212, 1, (STRLEN(?templateMotifCigarQ58649MF_00673212) - STRLEN(REPLACE(?templateMotifCigarQ58649MF_00673212, CONCAT('^(?:-*[^-]){', STR(((146 - ?templateMotifSequenceMatchBeginPositionQ58649213) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1224) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58649MF_00673214, 1, (STRLEN(?targetMotifMatchCigarQ58649MF_00673214) - STRLEN(REPLACE(?targetMotifMatchCigarQ58649MF_00673214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58649MF_00673214, 1, (STRLEN(?targetMotifMatchCigarQ58649MF_00673214) - STRLEN(REPLACE(?targetMotifMatchCigarQ58649MF_00673214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), '')))), '[^-]', ''))) AS ?step2225) .
BIND(((?step2225 + ?targetMotifMatchRegionMatchBeginPositionMF_00673215) - 1) AS ?thisPositionOn75) .
BIND(?thisPositionOn75 AS ?thisPositionOn76) .
BIND(?this AS ?pfs1t226) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00673a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
}
"xsd:string |
