| http://purl.uniprot.org/unirules/MF_00732#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:268806 up:source unirule:MF_00732 .
_:268807 up:source unirule:MF_00732 .
_:268808 up:source unirule:MF_00732 .
_:268809 up:source unirule:MF_00732 .
_:268810 up:source unirule:MF_00732 .
_:268811 up:source unirule:MF_00732 .
_:268812 up:source unirule:MF_00732 .
_:268813 up:source unirule:MF_00732 .
_:268814 up:source unirule:MF_00732 .
_:268815 up:source unirule:MF_00732 .
_:268816 up:source unirule:MF_00732 .
_:268817 up:source unirule:MF_00732 .
_:268818 up:source unirule:MF_00732 .
_:268819 up:source unirule:MF_00732 .
_:268820 up:source unirule:MF_00732 .
_:268821 up:source unirule:MF_00732 .
_:268822 up:source unirule:MF_00732 .
_:268823 up:source unirule:MF_00732 .
_:268824 up:source unirule:MF_00732 .
_:268825 up:source unirule:MF_00732 .
_:268826 up:source unirule:MF_00732 .
_:268827 up:source unirule:MF_00732 .
_:268828 up:source unirule:MF_00732 .
_:268829 up:source unirule:MF_00732 .
_:268830 up:source unirule:MF_00732 .
_:268831 up:source unirule:MF_00732 .
_:268832 up:source unirule:MF_00732 .
_:268833 up:source unirule:MF_00732 .
_:268834 up:source unirule:MF_00732 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation5 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0003700 ,
GO:0005737 ,
GO:0006355 ,
GO:0030026 ,
GO:0030145 ,
keyword:10 ,
keyword:238 ,
keyword:464 ,
keyword:479 ,
keyword:678 ,
keyword:804 ,
keyword:805 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'HTH-type transcriptional regulator MntR' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Manganese transport regulator' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'mntR' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Central regulator of manganese homeostasis.' .
?annotation4 a up:Activity_Regulation_Annotation ;
rdfs:comment 'DNA binding is strongly activated by Mn(2+).' .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the DtxR/MntR family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:29035 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:29035 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:29035 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:29035 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:29035 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:29035 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:29035 .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf chebi:29035 .
_:268835 a rdf:Statement ;
up:attribution _:268806 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:268836 a rdf:Statement ;
up:attribution _:268807 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:268837 a rdf:Statement ;
up:attribution _:268808 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:268838 a rdf:Statement ;
up:attribution _:268809 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:268839 a rdf:Statement ;
up:attribution _:268810 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:268840 a rdf:Statement ;
up:attribution _:268811 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:268841 a rdf:Statement ;
up:attribution _:268812 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:268842 a rdf:Statement ;
up:attribution _:268813 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:268843 a rdf:Statement ;
up:attribution _:268814 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:10 .
_:268844 a rdf:Statement ;
up:attribution _:268815 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:268845 a rdf:Statement ;
up:attribution _:268816 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:268846 a rdf:Statement ;
up:attribution _:268817 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:464 .
_:268847 a rdf:Statement ;
up:attribution _:268818 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:268848 a rdf:Statement ;
up:attribution _:268819 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:678 .
_:268849 a rdf:Statement ;
up:attribution _:268820 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:804 .
_:268850 a rdf:Statement ;
up:attribution _:268821 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:805 .
_:268851 a rdf:Statement ;
up:attribution _:268822 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030145 .
_:268852 a rdf:Statement ;
up:attribution _:268823 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003700 .
_:268853 a rdf:Statement ;
up:attribution _:268824 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030026 .
_:268854 a rdf:Statement ;
up:attribution _:268825 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006355 .
_:268855 a rdf:Statement ;
up:attribution _:268826 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:268856 a rdf:Statement ;
up:source unirule:MF_00732 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:268857 a rdf:Statement ;
up:attribution _:268827 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:268858 a rdf:Statement ;
up:source unirule:MF_00732 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:268859 a rdf:Statement ;
up:attribution _:268828 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:268860 a rdf:Statement ;
up:source unirule:MF_00732 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:268861 a rdf:Statement ;
up:attribution _:268829 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:268862 a rdf:Statement ;
up:source unirule:MF_00732 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:268863 a rdf:Statement ;
up:attribution _:268830 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:268864 a rdf:Statement ;
up:source unirule:MF_00732 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:268865 a rdf:Statement ;
up:attribution _:268831 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:268866 a rdf:Statement ;
up:source unirule:MF_00732 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:268867 a rdf:Statement ;
up:attribution _:268832 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:268868 a rdf:Statement ;
up:source unirule:MF_00732 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:268869 a rdf:Statement ;
up:attribution _:268833 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:268870 a rdf:Statement ;
up:source unirule:MF_00732 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:268871 a rdf:Statement ;
up:attribution _:268834 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00732
#Rule MF_00732 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2023-02-07
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00732 .
?thisOrganism rdfs:subClassOf+ taxon:91061 .
BIND(URI(CONCAT(STR(?this), '#MF_00732a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00732a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00732a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00732a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00732a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00732a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00732a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch69 faldo:location ?templateMotifSequenceMatchRegionP5451270 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5451272 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP54512MF_0073265 .
?templateMotifSequenceMatchRegionP5451270 faldo:begin ?templateMotifSequenceMatchBeginP5451271 .
?templateMotifSequenceMatchBeginP5451271 faldo:position ?templateMotifSequenceMatchBeginPositionP5451266 ;
faldo:reference isoform:P54512-1 .
?templateMotifSequenceProfileAlignmentOperationP5451272 edam:has_input signature:MF_00732 ;
rdf:type edam:operation_0300 .
?targetMotifMatch73 faldo:location ?targetMotifMatchRegionMatch74 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0073276 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP54512MF_0073267 .
?targetMotifMatchRegionMatch74 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0073275 .
?targetMotifMatchRegionMatchBeginMF_0073275 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0073268 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0073276 edam:has_input signature:MF_00732 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54512MF_0073265, 1, (STRLEN(?templateMotifCigarP54512MF_0073265) - STRLEN(REPLACE(?templateMotifCigarP54512MF_0073265, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionP5451266) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54512MF_0073267, 1, (STRLEN(?targetMotifMatchCigarP54512MF_0073267) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_0073267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54512MF_0073267, 1, (STRLEN(?targetMotifMatchCigarP54512MF_0073267) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_0073267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) .
BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0073268) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00732a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch84 faldo:location ?templateMotifSequenceMatchRegionP5451285 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5451287 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP54512MF_0073280 .
?templateMotifSequenceMatchRegionP5451285 faldo:begin ?templateMotifSequenceMatchBeginP5451286 .
?templateMotifSequenceMatchBeginP5451286 faldo:position ?templateMotifSequenceMatchBeginPositionP5451281 ;
faldo:reference isoform:P54512-1 .
?templateMotifSequenceProfileAlignmentOperationP5451287 edam:has_input signature:MF_00732 ;
rdf:type edam:operation_0300 .
?targetMotifMatch88 faldo:location ?targetMotifMatchRegionMatch89 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0073291 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP54512MF_0073282 .
?targetMotifMatchRegionMatch89 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0073290 .
?targetMotifMatchRegionMatchBeginMF_0073290 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0073283 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0073291 edam:has_input signature:MF_00732 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54512MF_0073280, 1, (STRLEN(?templateMotifCigarP54512MF_0073280) - STRLEN(REPLACE(?templateMotifCigarP54512MF_0073280, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP5451281) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54512MF_0073282, 1, (STRLEN(?targetMotifMatchCigarP54512MF_0073282) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_0073282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54512MF_0073282, 1, (STRLEN(?targetMotifMatchCigarP54512MF_0073282) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_0073282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) .
BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0073283) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00732a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch99 faldo:location ?templateMotifSequenceMatchRegionP54512100 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP54512102 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP54512MF_0073295 .
?templateMotifSequenceMatchRegionP54512100 faldo:begin ?templateMotifSequenceMatchBeginP54512101 .
?templateMotifSequenceMatchBeginP54512101 faldo:position ?templateMotifSequenceMatchBeginPositionP5451296 ;
faldo:reference isoform:P54512-1 .
?templateMotifSequenceProfileAlignmentOperationP54512102 edam:has_input signature:MF_00732 ;
rdf:type edam:operation_0300 .
?targetMotifMatch103 faldo:location ?targetMotifMatchRegionMatch104 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00732106 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP54512MF_0073297 .
?targetMotifMatchRegionMatch104 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00732105 .
?targetMotifMatchRegionMatchBeginMF_00732105 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0073298 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00732106 edam:has_input signature:MF_00732 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54512MF_0073295, 1, (STRLEN(?templateMotifCigarP54512MF_0073295) - STRLEN(REPLACE(?templateMotifCigarP54512MF_0073295, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionP5451296) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54512MF_0073297, 1, (STRLEN(?targetMotifMatchCigarP54512MF_0073297) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_0073297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54512MF_0073297, 1, (STRLEN(?targetMotifMatchCigarP54512MF_0073297) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_0073297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0073298) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00732a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch114 faldo:location ?templateMotifSequenceMatchRegionP54512115 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP54512117 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP54512MF_00732110 .
?templateMotifSequenceMatchRegionP54512115 faldo:begin ?templateMotifSequenceMatchBeginP54512116 .
?templateMotifSequenceMatchBeginP54512116 faldo:position ?templateMotifSequenceMatchBeginPositionP54512111 ;
faldo:reference isoform:P54512-1 .
?templateMotifSequenceProfileAlignmentOperationP54512117 edam:has_input signature:MF_00732 ;
rdf:type edam:operation_0300 .
?targetMotifMatch118 faldo:location ?targetMotifMatchRegionMatch119 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00732121 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP54512MF_00732112 .
?targetMotifMatchRegionMatch119 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00732120 .
?targetMotifMatchRegionMatchBeginMF_00732120 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00732113 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00732121 edam:has_input signature:MF_00732 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54512MF_00732110, 1, (STRLEN(?templateMotifCigarP54512MF_00732110) - STRLEN(REPLACE(?templateMotifCigarP54512MF_00732110, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionP54512111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54512MF_00732112, 1, (STRLEN(?targetMotifMatchCigarP54512MF_00732112) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_00732112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54512MF_00732112, 1, (STRLEN(?targetMotifMatchCigarP54512MF_00732112) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_00732112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) .
BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_00732113) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t124) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00732a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch129 faldo:location ?templateMotifSequenceMatchRegionP54512130 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP54512132 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP54512MF_00732125 .
?templateMotifSequenceMatchRegionP54512130 faldo:begin ?templateMotifSequenceMatchBeginP54512131 .
?templateMotifSequenceMatchBeginP54512131 faldo:position ?templateMotifSequenceMatchBeginPositionP54512126 ;
faldo:reference isoform:P54512-1 .
?templateMotifSequenceProfileAlignmentOperationP54512132 edam:has_input signature:MF_00732 ;
rdf:type edam:operation_0300 .
?targetMotifMatch133 faldo:location ?targetMotifMatchRegionMatch134 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00732136 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP54512MF_00732127 .
?targetMotifMatchRegionMatch134 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00732135 .
?targetMotifMatchRegionMatchBeginMF_00732135 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00732128 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00732136 edam:has_input signature:MF_00732 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54512MF_00732125, 1, (STRLEN(?templateMotifCigarP54512MF_00732125) - STRLEN(REPLACE(?templateMotifCigarP54512MF_00732125, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionP54512126) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54512MF_00732127, 1, (STRLEN(?targetMotifMatchCigarP54512MF_00732127) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_00732127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54512MF_00732127, 1, (STRLEN(?targetMotifMatchCigarP54512MF_00732127) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_00732127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), '')))), '[^-]', ''))) AS ?step2138) .
BIND(((?step2138 + ?targetMotifMatchRegionMatchBeginPositionMF_00732128) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t139) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00732a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch144 faldo:location ?templateMotifSequenceMatchRegionP54512145 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP54512147 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP54512MF_00732140 .
?templateMotifSequenceMatchRegionP54512145 faldo:begin ?templateMotifSequenceMatchBeginP54512146 .
?templateMotifSequenceMatchBeginP54512146 faldo:position ?templateMotifSequenceMatchBeginPositionP54512141 ;
faldo:reference isoform:P54512-1 .
?templateMotifSequenceProfileAlignmentOperationP54512147 edam:has_input signature:MF_00732 ;
rdf:type edam:operation_0300 .
?targetMotifMatch148 faldo:location ?targetMotifMatchRegionMatch149 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00732151 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP54512MF_00732142 .
?targetMotifMatchRegionMatch149 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00732150 .
?targetMotifMatchRegionMatchBeginMF_00732150 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00732143 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00732151 edam:has_input signature:MF_00732 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54512MF_00732140, 1, (STRLEN(?templateMotifCigarP54512MF_00732140) - STRLEN(REPLACE(?templateMotifCigarP54512MF_00732140, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionP54512141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54512MF_00732142, 1, (STRLEN(?targetMotifMatchCigarP54512MF_00732142) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_00732142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54512MF_00732142, 1, (STRLEN(?targetMotifMatchCigarP54512MF_00732142) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_00732142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), '')))), '[^-]', ''))) AS ?step2153) .
BIND(((?step2153 + ?targetMotifMatchRegionMatchBeginPositionMF_00732143) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t154) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00732a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch159 faldo:location ?templateMotifSequenceMatchRegionP54512160 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP54512162 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP54512MF_00732155 .
?templateMotifSequenceMatchRegionP54512160 faldo:begin ?templateMotifSequenceMatchBeginP54512161 .
?templateMotifSequenceMatchBeginP54512161 faldo:position ?templateMotifSequenceMatchBeginPositionP54512156 ;
faldo:reference isoform:P54512-1 .
?templateMotifSequenceProfileAlignmentOperationP54512162 edam:has_input signature:MF_00732 ;
rdf:type edam:operation_0300 .
?targetMotifMatch163 faldo:location ?targetMotifMatchRegionMatch164 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00732166 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP54512MF_00732157 .
?targetMotifMatchRegionMatch164 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00732165 .
?targetMotifMatchRegionMatchBeginMF_00732165 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00732158 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00732166 edam:has_input signature:MF_00732 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54512MF_00732155, 1, (STRLEN(?templateMotifCigarP54512MF_00732155) - STRLEN(REPLACE(?templateMotifCigarP54512MF_00732155, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionP54512156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54512MF_00732157, 1, (STRLEN(?targetMotifMatchCigarP54512MF_00732157) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_00732157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54512MF_00732157, 1, (STRLEN(?targetMotifMatchCigarP54512MF_00732157) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_00732157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) .
BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_00732158) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t169) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00732a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch174 faldo:location ?templateMotifSequenceMatchRegionP54512175 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP54512177 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP54512MF_00732170 .
?templateMotifSequenceMatchRegionP54512175 faldo:begin ?templateMotifSequenceMatchBeginP54512176 .
?templateMotifSequenceMatchBeginP54512176 faldo:position ?templateMotifSequenceMatchBeginPositionP54512171 ;
faldo:reference isoform:P54512-1 .
?templateMotifSequenceProfileAlignmentOperationP54512177 edam:has_input signature:MF_00732 ;
rdf:type edam:operation_0300 .
?targetMotifMatch178 faldo:location ?targetMotifMatchRegionMatch179 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00732181 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP54512MF_00732172 .
?targetMotifMatchRegionMatch179 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00732180 .
?targetMotifMatchRegionMatchBeginMF_00732180 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00732173 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00732181 edam:has_input signature:MF_00732 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54512MF_00732170, 1, (STRLEN(?templateMotifCigarP54512MF_00732170) - STRLEN(REPLACE(?templateMotifCigarP54512MF_00732170, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionP54512171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54512MF_00732172, 1, (STRLEN(?targetMotifMatchCigarP54512MF_00732172) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_00732172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54512MF_00732172, 1, (STRLEN(?targetMotifMatchCigarP54512MF_00732172) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_00732172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), '')))), '[^-]', ''))) AS ?step2183) .
BIND(((?step2183 + ?targetMotifMatchRegionMatchBeginPositionMF_00732173) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs1t184) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00732a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
}
"xsd:string |
