| http://purl.uniprot.org/unirules/MF_00742#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:271792 up:source unirule:MF_00742 .
_:271793 up:source unirule:MF_00742 .
_:271794 up:source unirule:MF_00742 .
_:271795 up:source unirule:MF_00742 .
_:271796 up:source unirule:MF_00742 .
_:271797 up:source unirule:MF_00742 .
_:271798 up:source unirule:MF_00742 .
_:271799 up:source unirule:MF_00742 .
_:271800 up:source unirule:MF_00742 .
_:271801 up:source unirule:MF_00742 .
_:271802 up:source unirule:MF_00742 .
_:271803 up:source unirule:MF_00742 .
_:271804 up:source unirule:MF_00742 .
_:271805 up:source unirule:MF_00742 .
_:271806 up:source unirule:MF_00742 .
_:271807 up:source unirule:MF_00742 .
_:271808 up:source unirule:MF_00742 .
_:271809 up:source unirule:MF_00742 .
_:271810 up:source unirule:MF_00742 .
_:271811 up:source unirule:MF_00742 .
_:271812 up:source unirule:MF_00742 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0008410 ,
GO:0033611 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.8.3.16' ;
up:fullName 'Formyl-CoA:oxalate CoA-transferase' ;
up:shortName 'FCOCT' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Formyl-coenzyme A transferase' ;
up:shortName 'Formyl-CoA transferase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'frc' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Metabolic intermediate degradation; oxalate degradation; CO(2) and formate from oxalate: step 1/2.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the CoA-transferase III family. Frc subfamily.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:57287 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:57287 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:57287 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:57287 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:57287 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:57287 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf ?molecule56 .
?molecule56 rdfs:label 'substrate' .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb61 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
up:ligand ?ligand69 ;
rdf:type up:Binding_Site_Annotation .
?pfsb67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?ligand69 rdfs:subClassOf chebi:57287 .
?pfs72 up:annotation ?annotation73 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
up:ligand ?ligand76 ;
rdf:type up:Binding_Site_Annotation .
?pfsb74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?ligand76 rdfs:subClassOf chebi:57287 .
_:271813 a rdf:Statement ;
up:attribution _:271792 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:271814 a rdf:Statement ;
up:attribution _:271793 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:271815 a rdf:Statement ;
up:attribution _:271794 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:271816 a rdf:Statement ;
up:attribution _:271795 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:271817 a rdf:Statement ;
up:attribution _:271796 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:271818 a rdf:Statement ;
up:attribution _:271797 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:271819 a rdf:Statement ;
up:attribution _:271798 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:271820 a rdf:Statement ;
up:attribution _:271799 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:271821 a rdf:Statement ;
up:attribution _:271800 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:271822 a rdf:Statement ;
up:attribution _:271801 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008410 .
_:271823 a rdf:Statement ;
up:attribution _:271802 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0033611 .
_:271824 a rdf:Statement ;
up:source unirule:MF_00742 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:271825 a rdf:Statement ;
up:attribution _:271803 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:271826 a rdf:Statement ;
up:source unirule:MF_00742 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:271827 a rdf:Statement ;
up:attribution _:271804 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:271828 a rdf:Statement ;
up:source unirule:MF_00742 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:271829 a rdf:Statement ;
up:attribution _:271805 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:271830 a rdf:Statement ;
up:source unirule:MF_00742 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:271831 a rdf:Statement ;
up:attribution _:271806 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:271832 a rdf:Statement ;
up:source unirule:MF_00742 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:271833 a rdf:Statement ;
up:attribution _:271807 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:271834 a rdf:Statement ;
up:source unirule:MF_00742 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:271835 a rdf:Statement ;
up:attribution _:271808 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:271836 a rdf:Statement ;
up:source unirule:MF_00742 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:271837 a rdf:Statement ;
up:attribution _:271809 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:271838 a rdf:Statement ;
up:source unirule:MF_00742 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:271839 a rdf:Statement ;
up:attribution _:271810 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:271840 a rdf:Statement ;
up:source unirule:MF_00742 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:271841 a rdf:Statement ;
up:attribution _:271811 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:271842 a rdf:Statement ;
up:source unirule:MF_00742 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:271843 a rdf:Statement ;
up:attribution _:271812 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00742
#Rule MF_00742 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00742 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00742a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00742a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00742a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00742a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00742a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00742a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00742a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch83 faldo:location ?templateMotifSequenceMatchRegionP6990284 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6990286 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69902MF_0074279 .
?templateMotifSequenceMatchRegionP6990284 faldo:begin ?templateMotifSequenceMatchBeginP6990285 .
?templateMotifSequenceMatchBeginP6990285 faldo:position ?templateMotifSequenceMatchBeginPositionP6990280 ;
faldo:reference isoform:P69902-1 .
?templateMotifSequenceProfileAlignmentOperationP6990286 edam:has_input signature:MF_00742 ;
rdf:type edam:operation_0300 .
?targetMotifMatch87 faldo:location ?targetMotifMatchRegionMatch88 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0074290 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69902MF_0074281 .
?targetMotifMatchRegionMatch88 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0074289 .
?targetMotifMatchRegionMatchBeginMF_0074289 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0074282 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0074290 edam:has_input signature:MF_00742 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69902MF_0074279, 1, (STRLEN(?templateMotifCigarP69902MF_0074279) - STRLEN(REPLACE(?templateMotifCigarP69902MF_0074279, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP6990280) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69902MF_0074281, 1, (STRLEN(?targetMotifMatchCigarP69902MF_0074281) - STRLEN(REPLACE(?targetMotifMatchCigarP69902MF_0074281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69902MF_0074281, 1, (STRLEN(?targetMotifMatchCigarP69902MF_0074281) - STRLEN(REPLACE(?targetMotifMatchCigarP69902MF_0074281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0074282) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69902MF_0074279, 1, (STRLEN(?templateMotifCigarP69902MF_0074279) - STRLEN(REPLACE(?templateMotifCigarP69902MF_0074279, CONCAT('^(?:-*[^-]){', STR(((18 - ?templateMotifSequenceMatchBeginPositionP6990280) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69902MF_0074281, 1, (STRLEN(?targetMotifMatchCigarP69902MF_0074281) - STRLEN(REPLACE(?targetMotifMatchCigarP69902MF_0074281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69902MF_0074281, 1, (STRLEN(?targetMotifMatchCigarP69902MF_0074281) - STRLEN(REPLACE(?targetMotifMatchCigarP69902MF_0074281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) .
BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0074282) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)) = 'QS')) .
BIND(URI(CONCAT(STR(?this), '#MF_00742a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch100 faldo:location ?templateMotifSequenceMatchRegionP69902101 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69902103 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69902MF_0074296 .
?templateMotifSequenceMatchRegionP69902101 faldo:begin ?templateMotifSequenceMatchBeginP69902102 .
?templateMotifSequenceMatchBeginP69902102 faldo:position ?templateMotifSequenceMatchBeginPositionP6990297 ;
faldo:reference isoform:P69902-1 .
?templateMotifSequenceProfileAlignmentOperationP69902103 edam:has_input signature:MF_00742 ;
rdf:type edam:operation_0300 .
?targetMotifMatch104 faldo:location ?targetMotifMatchRegionMatch105 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00742107 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69902MF_0074298 .
?targetMotifMatchRegionMatch105 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00742106 .
?targetMotifMatchRegionMatchBeginMF_00742106 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0074299 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00742107 edam:has_input signature:MF_00742 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69902MF_0074296, 1, (STRLEN(?templateMotifCigarP69902MF_0074296) - STRLEN(REPLACE(?templateMotifCigarP69902MF_0074296, CONCAT('^(?:-*[^-]){', STR(((273 - ?templateMotifSequenceMatchBeginPositionP6990297) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69902MF_0074298, 1, (STRLEN(?targetMotifMatchCigarP69902MF_0074298) - STRLEN(REPLACE(?targetMotifMatchCigarP69902MF_0074298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69902MF_0074298, 1, (STRLEN(?targetMotifMatchCigarP69902MF_0074298) - STRLEN(REPLACE(?targetMotifMatchCigarP69902MF_0074298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) .
BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0074299) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69902MF_0074296, 1, (STRLEN(?templateMotifCigarP69902MF_0074296) - STRLEN(REPLACE(?templateMotifCigarP69902MF_0074296, CONCAT('^(?:-*[^-]){', STR(((275 - ?templateMotifSequenceMatchBeginPositionP6990297) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69902MF_0074298, 1, (STRLEN(?targetMotifMatchCigarP69902MF_0074298) - STRLEN(REPLACE(?targetMotifMatchCigarP69902MF_0074298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69902MF_0074298, 1, (STRLEN(?targetMotifMatchCigarP69902MF_0074298) - STRLEN(REPLACE(?targetMotifMatchCigarP69902MF_0074298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_0074299) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER (REGEX('QE[ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00742a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionO06644118 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06644120 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO06644MF_00742113 .
?templateMotifSequenceMatchRegionO06644118 faldo:begin ?templateMotifSequenceMatchBeginO06644119 .
?templateMotifSequenceMatchBeginO06644119 faldo:position ?templateMotifSequenceMatchBeginPositionO06644114 ;
faldo:reference isoform:O06644-1 .
?templateMotifSequenceProfileAlignmentOperationO06644120 edam:has_input signature:MF_00742 ;
rdf:type edam:operation_0300 .
?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00742124 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO06644MF_00742115 .
?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00742123 .
?targetMotifMatchRegionMatchBeginMF_00742123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00742116 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00742124 edam:has_input signature:MF_00742 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742113, 1, (STRLEN(?templateMotifCigarO06644MF_00742113) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742113, CONCAT('^(?:-*[^-]){', STR(((15 - ?templateMotifSequenceMatchBeginPositionO06644114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742115, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742115) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742115, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742115) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_00742116) - 1) AS ?thisPositionOn28) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742113, 1, (STRLEN(?templateMotifCigarO06644MF_00742113) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742113, CONCAT('^(?:-*[^-]){', STR(((18 - ?templateMotifSequenceMatchBeginPositionO06644114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742115, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742115) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742115, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742115) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) .
BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_00742116) - 1) AS ?thisPositionOn29) .
BIND(?this AS ?pfs2t129) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER (REGEX('H[ARNDCQEGHILKMFPSTWYVBZJUOX]QA', SUBSTR(?thisSequenceValue, ?thisPositionOn28, (?thisPositionOn29 - ?thisPositionOn28)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00742a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionO06644135 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06644137 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO06644MF_00742130 .
?templateMotifSequenceMatchRegionO06644135 faldo:begin ?templateMotifSequenceMatchBeginO06644136 .
?templateMotifSequenceMatchBeginO06644136 faldo:position ?templateMotifSequenceMatchBeginPositionO06644131 ;
faldo:reference isoform:O06644-1 .
?templateMotifSequenceProfileAlignmentOperationO06644137 edam:has_input signature:MF_00742 ;
rdf:type edam:operation_0300 .
?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00742141 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO06644MF_00742132 .
?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00742140 .
?targetMotifMatchRegionMatchBeginMF_00742140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00742133 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00742141 edam:has_input signature:MF_00742 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742130, 1, (STRLEN(?templateMotifCigarO06644MF_00742130) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742130, CONCAT('^(?:-*[^-]){', STR(((72 - ?templateMotifSequenceMatchBeginPositionO06644131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742132, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742132) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742132, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742132) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) .
BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_00742133) - 1) AS ?thisPositionOn35) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742130, 1, (STRLEN(?templateMotifCigarO06644MF_00742130) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742130, CONCAT('^(?:-*[^-]){', STR(((75 - ?templateMotifSequenceMatchBeginPositionO06644131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742132, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742132) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742132, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742132) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_00742133) - 1) AS ?thisPositionOn36) .
BIND(?this AS ?pfs2t146) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER (REGEX('L[ARNDCQEGHILKMFPSTWYVBZJUOX][MT]K', SUBSTR(?thisSequenceValue, ?thisPositionOn35, (?thisPositionOn36 - ?thisPositionOn35)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00742a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch151 faldo:location ?templateMotifSequenceMatchRegionO06644152 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06644154 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO06644MF_00742147 .
?templateMotifSequenceMatchRegionO06644152 faldo:begin ?templateMotifSequenceMatchBeginO06644153 .
?templateMotifSequenceMatchBeginO06644153 faldo:position ?templateMotifSequenceMatchBeginPositionO06644148 ;
faldo:reference isoform:O06644-1 .
?templateMotifSequenceProfileAlignmentOperationO06644154 edam:has_input signature:MF_00742 ;
rdf:type edam:operation_0300 .
?targetMotifMatch155 faldo:location ?targetMotifMatchRegionMatch156 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00742158 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO06644MF_00742149 .
?targetMotifMatchRegionMatch156 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00742157 .
?targetMotifMatchRegionMatchBeginMF_00742157 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00742150 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00742158 edam:has_input signature:MF_00742 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742147, 1, (STRLEN(?templateMotifCigarO06644MF_00742147) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742147, CONCAT('^(?:-*[^-]){', STR(((96 - ?templateMotifSequenceMatchBeginPositionO06644148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742149, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742149) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742149, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742149) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) .
BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_00742150) - 1) AS ?thisPositionOn42) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742147, 1, (STRLEN(?templateMotifCigarO06644MF_00742147) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742147, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionO06644148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742149, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742149) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742149, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742149) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) .
BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_00742150) - 1) AS ?thisPositionOn43) .
BIND(?this AS ?pfs2t163) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER (REGEX('N[ARNDCQEGHILKMFPSTWYVBZJUOX][GAH]', SUBSTR(?thisSequenceValue, ?thisPositionOn42, (?thisPositionOn43 - ?thisPositionOn42)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00742a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionO06644169 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06644171 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO06644MF_00742164 .
?templateMotifSequenceMatchRegionO06644169 faldo:begin ?templateMotifSequenceMatchBeginO06644170 .
?templateMotifSequenceMatchBeginO06644170 faldo:position ?templateMotifSequenceMatchBeginPositionO06644165 ;
faldo:reference isoform:O06644-1 .
?templateMotifSequenceProfileAlignmentOperationO06644171 edam:has_input signature:MF_00742 ;
rdf:type edam:operation_0300 .
?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00742175 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO06644MF_00742166 .
?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00742174 .
?targetMotifMatchRegionMatchBeginMF_00742174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00742167 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00742175 edam:has_input signature:MF_00742 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742164, 1, (STRLEN(?templateMotifCigarO06644MF_00742164) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742164, CONCAT('^(?:-*[^-]){', STR(((137 - ?templateMotifSequenceMatchBeginPositionO06644165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742166, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742166) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742166, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742166) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) .
BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_00742167) - 1) AS ?thisPositionOn49) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742164, 1, (STRLEN(?templateMotifCigarO06644MF_00742164) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742164, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionO06644165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742166, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742166) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742166, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742166) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) .
BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_00742167) - 1) AS ?thisPositionOn50) .
BIND(?this AS ?pfs2t180) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER (REGEX('K[ARNDCQEGHILKMFPSTWYVBZJUOX]YE', SUBSTR(?thisSequenceValue, ?thisPositionOn49, (?thisPositionOn50 - ?thisPositionOn49)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00742a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch185 faldo:location ?templateMotifSequenceMatchRegionO06644186 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06644188 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO06644MF_00742181 .
?templateMotifSequenceMatchRegionO06644186 faldo:begin ?templateMotifSequenceMatchBeginO06644187 .
?templateMotifSequenceMatchBeginO06644187 faldo:position ?templateMotifSequenceMatchBeginPositionO06644182 ;
faldo:reference isoform:O06644-1 .
?templateMotifSequenceProfileAlignmentOperationO06644188 edam:has_input signature:MF_00742 ;
rdf:type edam:operation_0300 .
?targetMotifMatch189 faldo:location ?targetMotifMatchRegionMatch190 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00742192 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO06644MF_00742183 .
?targetMotifMatchRegionMatch190 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00742191 .
?targetMotifMatchRegionMatchBeginMF_00742191 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00742184 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00742192 edam:has_input signature:MF_00742 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742181, 1, (STRLEN(?templateMotifCigarO06644MF_00742181) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742181, CONCAT('^(?:-*[^-]){', STR(((260 - ?templateMotifSequenceMatchBeginPositionO06644182) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742183, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742183) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742183, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742183) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), '')))), '[^-]', ''))) AS ?step2194) .
BIND(((?step2194 + ?targetMotifMatchRegionMatchBeginPositionMF_00742184) - 1) AS ?thisPositionOn57) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742181, 1, (STRLEN(?templateMotifCigarO06644MF_00742181) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742181, CONCAT('^(?:-*[^-]){', STR(((262 - ?templateMotifSequenceMatchBeginPositionO06644182) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742183, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742183) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742183, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742183) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) .
BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_00742184) - 1) AS ?thisPositionOn58) .
BIND(?this AS ?pfs2t197) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, (?thisPositionOn58 - ?thisPositionOn57)) = 'GGQ')) .
BIND(URI(CONCAT(STR(?this), '#MF_00742a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch202 faldo:location ?templateMotifSequenceMatchRegionO06644203 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06644205 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO06644MF_00742198 .
?templateMotifSequenceMatchRegionO06644203 faldo:begin ?templateMotifSequenceMatchBeginO06644204 .
?templateMotifSequenceMatchBeginO06644204 faldo:position ?templateMotifSequenceMatchBeginPositionO06644199 ;
faldo:reference isoform:O06644-1 .
?templateMotifSequenceProfileAlignmentOperationO06644205 edam:has_input signature:MF_00742 ;
rdf:type edam:operation_0300 .
?targetMotifMatch206 faldo:location ?targetMotifMatchRegionMatch207 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00742209 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO06644MF_00742200 .
?targetMotifMatchRegionMatch207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00742208 .
?targetMotifMatchRegionMatchBeginMF_00742208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00742201 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00742209 edam:has_input signature:MF_00742 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742198, 1, (STRLEN(?templateMotifCigarO06644MF_00742198) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742198, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionO06644199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742200, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742200) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742200, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742200) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) .
BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_00742201) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs2t212) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse62) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00742a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch217 faldo:location ?templateMotifSequenceMatchRegionO06644218 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06644220 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO06644MF_00742213 .
?templateMotifSequenceMatchRegionO06644218 faldo:begin ?templateMotifSequenceMatchBeginO06644219 .
?templateMotifSequenceMatchBeginO06644219 faldo:position ?templateMotifSequenceMatchBeginPositionO06644214 ;
faldo:reference isoform:O06644-1 .
?templateMotifSequenceProfileAlignmentOperationO06644220 edam:has_input signature:MF_00742 ;
rdf:type edam:operation_0300 .
?targetMotifMatch221 faldo:location ?targetMotifMatchRegionMatch222 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00742224 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO06644MF_00742215 .
?targetMotifMatchRegionMatch222 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00742223 .
?targetMotifMatchRegionMatchBeginMF_00742223 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00742216 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00742224 edam:has_input signature:MF_00742 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742213, 1, (STRLEN(?templateMotifCigarO06644MF_00742213) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742213, CONCAT('^(?:-*[^-]){', STR(((38 - ?templateMotifSequenceMatchBeginPositionO06644214) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1225) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742215, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742215) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742215, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742215) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), '')))), '[^-]', ''))) AS ?step2226) .
BIND(((?step2226 + ?targetMotifMatchRegionMatchBeginPositionMF_00742216) - 1) AS ?thisPositionOn70) .
BIND(?thisPositionOn70 AS ?thisPositionOn71) .
BIND(?this AS ?pfs2t227) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00742a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch232 faldo:location ?templateMotifSequenceMatchRegionO06644233 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06644235 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO06644MF_00742228 .
?templateMotifSequenceMatchRegionO06644233 faldo:begin ?templateMotifSequenceMatchBeginO06644234 .
?templateMotifSequenceMatchBeginO06644234 faldo:position ?templateMotifSequenceMatchBeginPositionO06644229 ;
faldo:reference isoform:O06644-1 .
?templateMotifSequenceProfileAlignmentOperationO06644235 edam:has_input signature:MF_00742 ;
rdf:type edam:operation_0300 .
?targetMotifMatch236 faldo:location ?targetMotifMatchRegionMatch237 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00742239 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO06644MF_00742230 .
?targetMotifMatchRegionMatch237 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00742238 .
?targetMotifMatchRegionMatchBeginMF_00742238 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00742231 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00742239 edam:has_input signature:MF_00742 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742228, 1, (STRLEN(?templateMotifCigarO06644MF_00742228) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742228, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionO06644229) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1240) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742230, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742230) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742230, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742230) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), '')))), '[^-]', ''))) AS ?step2241) .
BIND(((?step2241 + ?targetMotifMatchRegionMatchBeginPositionMF_00742231) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs2t242) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) .
FILTER (REGEX('[RH]', SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00742a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
}
"xsd:string |
