| http://purl.uniprot.org/unirules/MF_00955#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:332252 up:source unirule:MF_00955 .
_:332253 up:source unirule:MF_00955 .
_:332254 up:source unirule:MF_00955 .
_:332255 up:source unirule:MF_00955 .
_:332256 up:source unirule:MF_00955 .
_:332257 up:source unirule:MF_00955 .
_:332258 up:source unirule:MF_00955 .
_:332259 up:source unirule:MF_00955 .
_:332260 up:source unirule:MF_00955 .
_:332261 up:source unirule:MF_00955 .
_:332262 up:source unirule:MF_00955 .
_:332263 up:source unirule:MF_00955 .
_:332264 up:source unirule:MF_00955 .
_:332265 up:source unirule:MF_00955 .
_:332266 up:source unirule:MF_00955 .
_:332267 up:source unirule:MF_00955 .
_:332268 up:source unirule:MF_00955 .
_:332269 up:source unirule:MF_00955 .
_:332270 up:source unirule:MF_00955 .
_:332271 up:source unirule:MF_00955 .
_:332272 up:source unirule:MF_00955 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0008446 ,
GO:0070401 ,
keyword:456 ,
keyword:521 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.2.1.47' ;
up:fullName 'GDP-mannose 4,6-dehydratase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'GDP-D-mannose dehydratase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'gmd' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6-deoxy-D-mannose.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:58349 ;
rdf:type up:Cofactor_Annotation .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the NAD(P)-dependent epimerase/dehydratase family. GDP-mannose 4,6-dehydratase subfamily.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:58349 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:58349 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:58349 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
rdf:type up:Active_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:58349 .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:58349 .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf chebi:58349 .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation .
?pfsb70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?ligand72 rdfs:subClassOf chebi:58349 .
_:332273 a rdf:Statement ;
up:attribution _:332252 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:332274 a rdf:Statement ;
up:attribution _:332253 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:332275 a rdf:Statement ;
up:attribution _:332254 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:332276 a rdf:Statement ;
up:attribution _:332255 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:332277 a rdf:Statement ;
up:attribution _:332256 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:332278 a rdf:Statement ;
up:attribution _:332257 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:332279 a rdf:Statement ;
up:attribution _:332258 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:332280 a rdf:Statement ;
up:attribution _:332259 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:332281 a rdf:Statement ;
up:attribution _:332260 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:332282 a rdf:Statement ;
up:attribution _:332261 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008446 .
_:332283 a rdf:Statement ;
up:attribution _:332262 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070401 .
_:332284 a rdf:Statement ;
up:source unirule:MF_00955 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:332285 a rdf:Statement ;
up:attribution _:332263 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:332286 a rdf:Statement ;
up:source unirule:MF_00955 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:332287 a rdf:Statement ;
up:attribution _:332264 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:332288 a rdf:Statement ;
up:source unirule:MF_00955 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:332289 a rdf:Statement ;
up:attribution _:332265 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:332290 a rdf:Statement ;
up:source unirule:MF_00955 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:332291 a rdf:Statement ;
up:attribution _:332266 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:332292 a rdf:Statement ;
up:source unirule:MF_00955 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:332293 a rdf:Statement ;
up:attribution _:332267 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:332294 a rdf:Statement ;
up:source unirule:MF_00955 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:332295 a rdf:Statement ;
up:attribution _:332268 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:332296 a rdf:Statement ;
up:source unirule:MF_00955 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:332297 a rdf:Statement ;
up:attribution _:332269 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:332298 a rdf:Statement ;
up:source unirule:MF_00955 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:332299 a rdf:Statement ;
up:attribution _:332270 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:332300 a rdf:Statement ;
up:source unirule:MF_00955 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:332301 a rdf:Statement ;
up:attribution _:332271 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:332302 a rdf:Statement ;
up:source unirule:MF_00955 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:332303 a rdf:Statement ;
up:attribution _:332272 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00955
#Rule MF_00955 Created by:? on:2013-04-11 Modified by:Edouard de Castro on:2023-06-01
VALUES ?supertaxon75 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00955 .
?thisOrganism rdfs:subClassOf+ ?supertaxon75 .
BIND(URI(CONCAT(STR(?this), '#MF_00955a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00955a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00955a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00955a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00955a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00955a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch80 faldo:location ?templateMotifSequenceMatchRegionP0AC8881 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AC8883 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AC88MF_0095576 .
?templateMotifSequenceMatchRegionP0AC8881 faldo:begin ?templateMotifSequenceMatchBeginP0AC8882 .
?templateMotifSequenceMatchBeginP0AC8882 faldo:position ?templateMotifSequenceMatchBeginPositionP0AC8877 ;
faldo:reference isoform:P0AC88-1 .
?templateMotifSequenceProfileAlignmentOperationP0AC8883 edam:has_input signature:MF_00955 ;
rdf:type edam:operation_0300 .
?targetMotifMatch84 faldo:location ?targetMotifMatchRegionMatch85 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0095587 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AC88MF_0095578 .
?targetMotifMatchRegionMatch85 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0095586 .
?targetMotifMatchRegionMatchBeginMF_0095586 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0095579 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0095587 edam:has_input signature:MF_00955 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_0095576, 1, (STRLEN(?templateMotifCigarP0AC88MF_0095576) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_0095576, CONCAT('^(?:-*[^-]){', STR(((35 - ?templateMotifSequenceMatchBeginPositionP0AC8877) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_0095578, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_0095578) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_0095578, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_0095578, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_0095578) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_0095578, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0095579) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_0095576, 1, (STRLEN(?templateMotifCigarP0AC88MF_0095576) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_0095576, CONCAT('^(?:-*[^-]){', STR(((40 - ?templateMotifSequenceMatchBeginPositionP0AC8877) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_0095578, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_0095578) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_0095578, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_0095578, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_0095578) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_0095578, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) .
BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0095579) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t92) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]GQD', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00955a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch97 faldo:location ?templateMotifSequenceMatchRegionP0AC8898 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AC88100 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AC88MF_0095593 .
?templateMotifSequenceMatchRegionP0AC8898 faldo:begin ?templateMotifSequenceMatchBeginP0AC8899 .
?templateMotifSequenceMatchBeginP0AC8899 faldo:position ?templateMotifSequenceMatchBeginPositionP0AC8894 ;
faldo:reference isoform:P0AC88-1 .
?templateMotifSequenceProfileAlignmentOperationP0AC88100 edam:has_input signature:MF_00955 ;
rdf:type edam:operation_0300 .
?targetMotifMatch101 faldo:location ?targetMotifMatchRegionMatch102 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00955104 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AC88MF_0095595 .
?targetMotifMatchRegionMatch102 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00955103 .
?targetMotifMatchRegionMatchBeginMF_00955103 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0095596 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00955104 edam:has_input signature:MF_00955 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_0095593, 1, (STRLEN(?templateMotifCigarP0AC88MF_0095593) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_0095593, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionP0AC8894) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_0095595, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_0095595) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_0095595, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_0095595, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_0095595) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_0095595, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0095596) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_0095593, 1, (STRLEN(?templateMotifCigarP0AC88MF_0095593) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_0095593, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionP0AC8894) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_0095595, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_0095595) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_0095595, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_0095595, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_0095595) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_0095595, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0095596) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER (REGEX('D[LMIV]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00955a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch114 faldo:location ?templateMotifSequenceMatchRegionP0AC88115 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AC88117 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AC88MF_00955110 .
?templateMotifSequenceMatchRegionP0AC88115 faldo:begin ?templateMotifSequenceMatchBeginP0AC88116 .
?templateMotifSequenceMatchBeginP0AC88116 faldo:position ?templateMotifSequenceMatchBeginPositionP0AC88111 ;
faldo:reference isoform:P0AC88-1 .
?templateMotifSequenceProfileAlignmentOperationP0AC88117 edam:has_input signature:MF_00955 ;
rdf:type edam:operation_0300 .
?targetMotifMatch118 faldo:location ?targetMotifMatchRegionMatch119 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00955121 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AC88MF_00955112 .
?targetMotifMatchRegionMatch119 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00955120 .
?targetMotifMatchRegionMatchBeginMF_00955120 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00955113 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00955121 edam:has_input signature:MF_00955 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_00955110, 1, (STRLEN(?templateMotifCigarP0AC88MF_00955110) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_00955110, CONCAT('^(?:-*[^-]){', STR(((113 - ?templateMotifSequenceMatchBeginPositionP0AC88111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955112, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955112) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955112, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955112) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) .
BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_00955113) - 1) AS ?thisPositionOn27) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_00955110, 1, (STRLEN(?templateMotifCigarP0AC88MF_00955110) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_00955110, CONCAT('^(?:-*[^-]){', STR(((117 - ?templateMotifSequenceMatchBeginPositionP0AC88111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955112, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955112) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955112, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955112) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) .
BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_00955113) - 1) AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER (REGEX('L[ARNDCQEGHILKMFPSTWYVBZJUOX][AG][ARNDCQEGHILKMFPSTWYVBZJUOX][ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn27, (?thisPositionOn28 - ?thisPositionOn27)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00955a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionP0AC88132 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AC88134 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AC88MF_00955127 .
?templateMotifSequenceMatchRegionP0AC88132 faldo:begin ?templateMotifSequenceMatchBeginP0AC88133 .
?templateMotifSequenceMatchBeginP0AC88133 faldo:position ?templateMotifSequenceMatchBeginPositionP0AC88128 ;
faldo:reference isoform:P0AC88-1 .
?templateMotifSequenceProfileAlignmentOperationP0AC88134 edam:has_input signature:MF_00955 ;
rdf:type edam:operation_0300 .
?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00955138 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AC88MF_00955129 .
?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00955137 .
?targetMotifMatchRegionMatchBeginMF_00955137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00955130 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00955138 edam:has_input signature:MF_00955 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_00955127, 1, (STRLEN(?templateMotifCigarP0AC88MF_00955127) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_00955127, CONCAT('^(?:-*[^-]){', STR(((162 - ?templateMotifSequenceMatchBeginPositionP0AC88128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955129, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955129) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955129, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955129) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) .
BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_00955130) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t141) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00955a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch146 faldo:location ?templateMotifSequenceMatchRegionP0AC88147 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AC88149 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AC88MF_00955142 .
?templateMotifSequenceMatchRegionP0AC88147 faldo:begin ?templateMotifSequenceMatchBeginP0AC88148 .
?templateMotifSequenceMatchBeginP0AC88148 faldo:position ?templateMotifSequenceMatchBeginPositionP0AC88143 ;
faldo:reference isoform:P0AC88-1 .
?templateMotifSequenceProfileAlignmentOperationP0AC88149 edam:has_input signature:MF_00955 ;
rdf:type edam:operation_0300 .
?targetMotifMatch150 faldo:location ?targetMotifMatchRegionMatch151 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00955153 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AC88MF_00955144 .
?targetMotifMatchRegionMatch151 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00955152 .
?targetMotifMatchRegionMatchBeginMF_00955152 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00955145 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00955153 edam:has_input signature:MF_00955 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_00955142, 1, (STRLEN(?templateMotifCigarP0AC88MF_00955142) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_00955142, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionP0AC88143) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955144, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955144) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955144, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955144) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), '')))), '[^-]', ''))) AS ?step2155) .
BIND(((?step2155 + ?targetMotifMatchRegionMatchBeginPositionMF_00955145) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t156) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00955a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch161 faldo:location ?templateMotifSequenceMatchRegionP0AC88162 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AC88164 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AC88MF_00955157 .
?templateMotifSequenceMatchRegionP0AC88162 faldo:begin ?templateMotifSequenceMatchBeginP0AC88163 .
?templateMotifSequenceMatchBeginP0AC88163 faldo:position ?templateMotifSequenceMatchBeginPositionP0AC88158 ;
faldo:reference isoform:P0AC88-1 .
?templateMotifSequenceProfileAlignmentOperationP0AC88164 edam:has_input signature:MF_00955 ;
rdf:type edam:operation_0300 .
?targetMotifMatch165 faldo:location ?targetMotifMatchRegionMatch166 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00955168 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AC88MF_00955159 .
?targetMotifMatchRegionMatch166 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00955167 .
?targetMotifMatchRegionMatchBeginMF_00955167 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00955160 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00955168 edam:has_input signature:MF_00955 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_00955157, 1, (STRLEN(?templateMotifCigarP0AC88MF_00955157) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_00955157, CONCAT('^(?:-*[^-]){', STR(((185 - ?templateMotifSequenceMatchBeginPositionP0AC88158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955159, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955159) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955159, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955159) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), '')))), '[^-]', ''))) AS ?step2170) .
BIND(((?step2170 + ?targetMotifMatchRegionMatchBeginPositionMF_00955160) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t171) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00955a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch176 faldo:location ?templateMotifSequenceMatchRegionP0AC88177 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AC88179 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AC88MF_00955172 .
?templateMotifSequenceMatchRegionP0AC88177 faldo:begin ?templateMotifSequenceMatchBeginP0AC88178 .
?templateMotifSequenceMatchBeginP0AC88178 faldo:position ?templateMotifSequenceMatchBeginPositionP0AC88173 ;
faldo:reference isoform:P0AC88-1 .
?templateMotifSequenceProfileAlignmentOperationP0AC88179 edam:has_input signature:MF_00955 ;
rdf:type edam:operation_0300 .
?targetMotifMatch180 faldo:location ?targetMotifMatchRegionMatch181 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00955183 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AC88MF_00955174 .
?targetMotifMatchRegionMatch181 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00955182 .
?targetMotifMatchRegionMatchBeginMF_00955182 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00955175 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00955183 edam:has_input signature:MF_00955 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_00955172, 1, (STRLEN(?templateMotifCigarP0AC88MF_00955172) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_00955172, CONCAT('^(?:-*[^-]){', STR(((128 - ?templateMotifSequenceMatchBeginPositionP0AC88173) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955174, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955174) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955174, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955174) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), '')))), '[^-]', ''))) AS ?step2185) .
BIND(((?step2185 + ?targetMotifMatchRegionMatchBeginPositionMF_00955175) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t186) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00955a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch191 faldo:location ?templateMotifSequenceMatchRegionP0AC88192 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AC88194 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AC88MF_00955187 .
?templateMotifSequenceMatchRegionP0AC88192 faldo:begin ?templateMotifSequenceMatchBeginP0AC88193 .
?templateMotifSequenceMatchBeginP0AC88193 faldo:position ?templateMotifSequenceMatchBeginPositionP0AC88188 ;
faldo:reference isoform:P0AC88-1 .
?templateMotifSequenceProfileAlignmentOperationP0AC88194 edam:has_input signature:MF_00955 ;
rdf:type edam:operation_0300 .
?targetMotifMatch195 faldo:location ?targetMotifMatchRegionMatch196 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00955198 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AC88MF_00955189 .
?targetMotifMatchRegionMatch196 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00955197 .
?targetMotifMatchRegionMatchBeginMF_00955197 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00955190 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00955198 edam:has_input signature:MF_00955 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_00955187, 1, (STRLEN(?templateMotifCigarP0AC88MF_00955187) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_00955187, CONCAT('^(?:-*[^-]){', STR(((189 - ?templateMotifSequenceMatchBeginPositionP0AC88188) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955189, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955189) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955189, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955189) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), '')))), '[^-]', ''))) AS ?step2200) .
BIND(((?step2200 + ?targetMotifMatchRegionMatchBeginPositionMF_00955190) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t201) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00955a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch206 faldo:location ?templateMotifSequenceMatchRegionP0AC88207 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AC88209 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AC88MF_00955202 .
?templateMotifSequenceMatchRegionP0AC88207 faldo:begin ?templateMotifSequenceMatchBeginP0AC88208 .
?templateMotifSequenceMatchBeginP0AC88208 faldo:position ?templateMotifSequenceMatchBeginPositionP0AC88203 ;
faldo:reference isoform:P0AC88-1 .
?templateMotifSequenceProfileAlignmentOperationP0AC88209 edam:has_input signature:MF_00955 ;
rdf:type edam:operation_0300 .
?targetMotifMatch210 faldo:location ?targetMotifMatchRegionMatch211 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00955213 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AC88MF_00955204 .
?targetMotifMatchRegionMatch211 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00955212 .
?targetMotifMatchRegionMatchBeginMF_00955212 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00955205 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00955213 edam:has_input signature:MF_00955 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_00955202, 1, (STRLEN(?templateMotifCigarP0AC88MF_00955202) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_00955202, CONCAT('^(?:-*[^-]){', STR(((215 - ?templateMotifSequenceMatchBeginPositionP0AC88203) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1214) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955204, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955204) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955204, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955204) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), '')))), '[^-]', ''))) AS ?step2215) .
BIND(((?step2215 + ?targetMotifMatchRegionMatchBeginPositionMF_00955205) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs1t216) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00955a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch221 faldo:location ?templateMotifSequenceMatchRegionP0AC88222 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AC88224 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AC88MF_00955217 .
?templateMotifSequenceMatchRegionP0AC88222 faldo:begin ?templateMotifSequenceMatchBeginP0AC88223 .
?templateMotifSequenceMatchBeginP0AC88223 faldo:position ?templateMotifSequenceMatchBeginPositionP0AC88218 ;
faldo:reference isoform:P0AC88-1 .
?templateMotifSequenceProfileAlignmentOperationP0AC88224 edam:has_input signature:MF_00955 ;
rdf:type edam:operation_0300 .
?targetMotifMatch225 faldo:location ?targetMotifMatchRegionMatch226 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00955228 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AC88MF_00955219 .
?targetMotifMatchRegionMatch226 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00955227 .
?targetMotifMatchRegionMatchBeginMF_00955227 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00955220 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00955228 edam:has_input signature:MF_00955 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_00955217, 1, (STRLEN(?templateMotifCigarP0AC88MF_00955217) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_00955217, CONCAT('^(?:-*[^-]){', STR(((220 - ?templateMotifSequenceMatchBeginPositionP0AC88218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1229) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955219, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955219) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955219, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955219) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), '')))), '[^-]', ''))) AS ?step2230) .
BIND(((?step2230 + ?targetMotifMatchRegionMatchBeginPositionMF_00955220) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs1t231) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00955a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
}
"xsd:string |
