| http://purl.uniprot.org/unirules/MF_00998#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:348720 up:source unirule:MF_00998 .
_:348721 up:source unirule:MF_00998 .
_:348722 up:source unirule:MF_00998 .
_:348723 up:source unirule:MF_00998 .
_:348724 up:source unirule:MF_00998 .
_:348725 up:source unirule:MF_00998 .
_:348726 up:source unirule:MF_00998 .
_:348727 up:source unirule:MF_00998 .
_:348728 up:source unirule:MF_00998 .
_:348729 up:source unirule:MF_00998 .
_:348730 up:source unirule:MF_00998 .
_:348731 up:source unirule:MF_00998 .
_:348732 up:source unirule:MF_00998 .
_:348733 up:source unirule:MF_00998 .
_:348734 up:source unirule:MF_00998 .
_:348735 up:source unirule:MF_00998 .
_:348736 up:source unirule:MF_00998 .
_:348737 up:source unirule:MF_00998 .
_:348738 up:source unirule:MF_00998 .
_:348739 up:source unirule:MF_00998 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ,
?annotation5 ;
up:classifiedWith GO:0061593 ,
GO:1902777 ,
keyword:119 ,
keyword:413 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.3.1.31' ;
up:fullName 'Sulfoquinovose isomerase' ;
up:shortName 'SQ isomerase' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the isomerization of sulfoquinovose (SQ) to 6-deoxy-6-sulfo-D-fructose (SF).' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Homohexamer.' .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the N-acylglucosamine 2-epimerase family.' .
?pfs6 up:annotation ?annotation7 .
?annotation7 faldo:begin ?pfsb8 ;
faldo:end ?pfse9 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor/acceptor' .
?pfsb8 faldo:position ?thisPositionOn10 ;
rdf:type faldo:ExactPosition .
?pfse9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor/acceptor' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:142957 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:142957 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:142957 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:142957 .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf chebi:142957 .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf chebi:142957 .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
up:ligand ?ligand64 ;
rdf:type up:Binding_Site_Annotation .
?pfsb62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?ligand64 rdfs:subClassOf chebi:142957 .
?pfs67 up:annotation ?annotation68 .
?annotation68 faldo:begin ?pfsb69 ;
faldo:end ?pfse70 ;
up:ligand ?ligand71 ;
rdf:type up:Binding_Site_Annotation .
?pfsb69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?ligand71 rdfs:subClassOf chebi:142957 .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
up:ligand ?ligand78 ;
rdf:type up:Binding_Site_Annotation .
?pfsb76 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?ligand78 rdfs:subClassOf chebi:142957 .
_:348740 a rdf:Statement ;
up:attribution _:348720 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:348741 a rdf:Statement ;
up:attribution _:348721 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:348742 a rdf:Statement ;
up:attribution _:348722 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:348743 a rdf:Statement ;
up:attribution _:348723 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:348744 a rdf:Statement ;
up:attribution _:348724 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:348745 a rdf:Statement ;
up:attribution _:348725 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:119 .
_:348746 a rdf:Statement ;
up:attribution _:348726 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:348747 a rdf:Statement ;
up:attribution _:348727 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0061593 .
_:348748 a rdf:Statement ;
up:attribution _:348728 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:1902777 .
_:348749 a rdf:Statement ;
up:source unirule:MF_00998 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:348750 a rdf:Statement ;
up:attribution _:348729 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:348751 a rdf:Statement ;
up:source unirule:MF_00998 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:348752 a rdf:Statement ;
up:attribution _:348730 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:348753 a rdf:Statement ;
up:source unirule:MF_00998 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:348754 a rdf:Statement ;
up:attribution _:348731 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:348755 a rdf:Statement ;
up:source unirule:MF_00998 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:348756 a rdf:Statement ;
up:attribution _:348732 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:348757 a rdf:Statement ;
up:source unirule:MF_00998 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:348758 a rdf:Statement ;
up:attribution _:348733 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:348759 a rdf:Statement ;
up:source unirule:MF_00998 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:348760 a rdf:Statement ;
up:attribution _:348734 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:348761 a rdf:Statement ;
up:source unirule:MF_00998 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:348762 a rdf:Statement ;
up:attribution _:348735 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:348763 a rdf:Statement ;
up:source unirule:MF_00998 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:348764 a rdf:Statement ;
up:attribution _:348736 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:348765 a rdf:Statement ;
up:source unirule:MF_00998 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:348766 a rdf:Statement ;
up:attribution _:348737 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:348767 a rdf:Statement ;
up:source unirule:MF_00998 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:348768 a rdf:Statement ;
up:attribution _:348738 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:348769 a rdf:Statement ;
up:source unirule:MF_00998 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:348770 a rdf:Statement ;
up:attribution _:348739 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00998
#Rule MF_00998 Created by:? on:2014-03-31 Modified by:Catherine Rivoire on:2023-07-05
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00998 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_00998a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00998a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_00998a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00998a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00998a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch85 faldo:location ?templateMotifSequenceMatchRegionQ8ZKT786 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKT788 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKT7MF_0099881 .
?templateMotifSequenceMatchRegionQ8ZKT786 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKT787 .
?templateMotifSequenceMatchBeginQ8ZKT787 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKT782 ;
faldo:reference isoform:Q8ZKT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKT788 edam:has_input signature:MF_00998 ;
rdf:type edam:operation_0300 .
?targetMotifMatch89 faldo:location ?targetMotifMatchRegionMatch90 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0099892 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKT7MF_0099883 .
?targetMotifMatchRegionMatch90 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0099891 .
?targetMotifMatchRegionMatchBeginMF_0099891 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0099884 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0099892 edam:has_input signature:MF_00998 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKT7MF_0099881, 1, (STRLEN(?templateMotifCigarQ8ZKT7MF_0099881) - STRLEN(REPLACE(?templateMotifCigarQ8ZKT7MF_0099881, CONCAT('^(?:-*[^-]){', STR(((248 - ?templateMotifSequenceMatchBeginPositionQ8ZKT782) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKT7MF_0099883, 1, (STRLEN(?targetMotifMatchCigarQ8ZKT7MF_0099883) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKT7MF_0099883, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKT7MF_0099883, 1, (STRLEN(?targetMotifMatchCigarQ8ZKT7MF_0099883) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKT7MF_0099883, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) .
BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0099884) - 1) AS ?thisPositionOn10) .
BIND(?thisPositionOn10 AS ?thisPositionOn11) .
BIND(?this AS ?pfs1t95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb8) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse9) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn10, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00998a7')) AS ?annotation7) .
BIND(?this AS ?pfs6) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch100 faldo:location ?templateMotifSequenceMatchRegionQ8ZKT7101 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKT7103 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKT7MF_0099896 .
?templateMotifSequenceMatchRegionQ8ZKT7101 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKT7102 .
?templateMotifSequenceMatchBeginQ8ZKT7102 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKT797 ;
faldo:reference isoform:Q8ZKT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKT7103 edam:has_input signature:MF_00998 ;
rdf:type edam:operation_0300 .
?targetMotifMatch104 faldo:location ?targetMotifMatchRegionMatch105 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00998107 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKT7MF_0099898 .
?targetMotifMatchRegionMatch105 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00998106 .
?targetMotifMatchRegionMatchBeginMF_00998106 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0099899 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00998107 edam:has_input signature:MF_00998 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKT7MF_0099896, 1, (STRLEN(?templateMotifCigarQ8ZKT7MF_0099896) - STRLEN(REPLACE(?templateMotifCigarQ8ZKT7MF_0099896, CONCAT('^(?:-*[^-]){', STR(((383 - ?templateMotifSequenceMatchBeginPositionQ8ZKT797) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKT7MF_0099898, 1, (STRLEN(?targetMotifMatchCigarQ8ZKT7MF_0099898) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKT7MF_0099898, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKT7MF_0099898, 1, (STRLEN(?targetMotifMatchCigarQ8ZKT7MF_0099898) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKT7MF_0099898, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) .
BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0099899) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t110) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00998a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch115 faldo:location ?templateMotifSequenceMatchRegionQ8ZKT7116 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKT7118 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKT7MF_00998111 .
?templateMotifSequenceMatchRegionQ8ZKT7116 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKT7117 .
?templateMotifSequenceMatchBeginQ8ZKT7117 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKT7112 ;
faldo:reference isoform:Q8ZKT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKT7118 edam:has_input signature:MF_00998 ;
rdf:type edam:operation_0300 .
?targetMotifMatch119 faldo:location ?targetMotifMatchRegionMatch120 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00998122 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKT7MF_00998113 .
?targetMotifMatchRegionMatch120 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00998121 .
?targetMotifMatchRegionMatchBeginMF_00998121 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00998114 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00998122 edam:has_input signature:MF_00998 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKT7MF_00998111, 1, (STRLEN(?templateMotifCigarQ8ZKT7MF_00998111) - STRLEN(REPLACE(?templateMotifCigarQ8ZKT7MF_00998111, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionQ8ZKT7112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKT7MF_00998113, 1, (STRLEN(?targetMotifMatchCigarQ8ZKT7MF_00998113) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKT7MF_00998113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKT7MF_00998113, 1, (STRLEN(?targetMotifMatchCigarQ8ZKT7MF_00998113) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKT7MF_00998113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) .
BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_00998114) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00998a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch130 faldo:location ?templateMotifSequenceMatchRegionQ8ZKT7131 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKT7133 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKT7MF_00998126 .
?templateMotifSequenceMatchRegionQ8ZKT7131 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKT7132 .
?templateMotifSequenceMatchBeginQ8ZKT7132 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKT7127 ;
faldo:reference isoform:Q8ZKT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKT7133 edam:has_input signature:MF_00998 ;
rdf:type edam:operation_0300 .
?targetMotifMatch134 faldo:location ?targetMotifMatchRegionMatch135 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00998137 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKT7MF_00998128 .
?targetMotifMatchRegionMatch135 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00998136 .
?targetMotifMatchRegionMatchBeginMF_00998136 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00998129 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00998137 edam:has_input signature:MF_00998 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKT7MF_00998126, 1, (STRLEN(?templateMotifCigarQ8ZKT7MF_00998126) - STRLEN(REPLACE(?templateMotifCigarQ8ZKT7MF_00998126, CONCAT('^(?:-*[^-]){', STR(((111 - ?templateMotifSequenceMatchBeginPositionQ8ZKT7127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKT7MF_00998128, 1, (STRLEN(?targetMotifMatchCigarQ8ZKT7MF_00998128) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKT7MF_00998128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKT7MF_00998128, 1, (STRLEN(?targetMotifMatchCigarQ8ZKT7MF_00998128) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKT7MF_00998128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) .
BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_00998129) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t140) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00998a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch145 faldo:location ?templateMotifSequenceMatchRegionQ8ZKT7146 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKT7148 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKT7MF_00998141 .
?templateMotifSequenceMatchRegionQ8ZKT7146 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKT7147 .
?templateMotifSequenceMatchBeginQ8ZKT7147 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKT7142 ;
faldo:reference isoform:Q8ZKT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKT7148 edam:has_input signature:MF_00998 ;
rdf:type edam:operation_0300 .
?targetMotifMatch149 faldo:location ?targetMotifMatchRegionMatch150 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00998152 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKT7MF_00998143 .
?targetMotifMatchRegionMatch150 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00998151 .
?targetMotifMatchRegionMatchBeginMF_00998151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00998144 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00998152 edam:has_input signature:MF_00998 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKT7MF_00998141, 1, (STRLEN(?templateMotifCigarQ8ZKT7MF_00998141) - STRLEN(REPLACE(?templateMotifCigarQ8ZKT7MF_00998141, CONCAT('^(?:-*[^-]){', STR(((172 - ?templateMotifSequenceMatchBeginPositionQ8ZKT7142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKT7MF_00998143, 1, (STRLEN(?targetMotifMatchCigarQ8ZKT7MF_00998143) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKT7MF_00998143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKT7MF_00998143, 1, (STRLEN(?targetMotifMatchCigarQ8ZKT7MF_00998143) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKT7MF_00998143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) .
BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_00998144) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t155) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00998a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch160 faldo:location ?templateMotifSequenceMatchRegionQ8ZKT7161 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKT7163 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKT7MF_00998156 .
?templateMotifSequenceMatchRegionQ8ZKT7161 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKT7162 .
?templateMotifSequenceMatchBeginQ8ZKT7162 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKT7157 ;
faldo:reference isoform:Q8ZKT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKT7163 edam:has_input signature:MF_00998 ;
rdf:type edam:operation_0300 .
?targetMotifMatch164 faldo:location ?targetMotifMatchRegionMatch165 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00998167 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKT7MF_00998158 .
?targetMotifMatchRegionMatch165 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00998166 .
?targetMotifMatchRegionMatchBeginMF_00998166 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00998159 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00998167 edam:has_input signature:MF_00998 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKT7MF_00998156, 1, (STRLEN(?templateMotifCigarQ8ZKT7MF_00998156) - STRLEN(REPLACE(?templateMotifCigarQ8ZKT7MF_00998156, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionQ8ZKT7157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKT7MF_00998158, 1, (STRLEN(?targetMotifMatchCigarQ8ZKT7MF_00998158) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKT7MF_00998158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKT7MF_00998158, 1, (STRLEN(?targetMotifMatchCigarQ8ZKT7MF_00998158) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKT7MF_00998158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) .
BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_00998159) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t170) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00998a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch175 faldo:location ?templateMotifSequenceMatchRegionQ8ZKT7176 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKT7178 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKT7MF_00998171 .
?templateMotifSequenceMatchRegionQ8ZKT7176 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKT7177 .
?templateMotifSequenceMatchBeginQ8ZKT7177 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKT7172 ;
faldo:reference isoform:Q8ZKT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKT7178 edam:has_input signature:MF_00998 ;
rdf:type edam:operation_0300 .
?targetMotifMatch179 faldo:location ?targetMotifMatchRegionMatch180 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00998182 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKT7MF_00998173 .
?targetMotifMatchRegionMatch180 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00998181 .
?targetMotifMatchRegionMatchBeginMF_00998181 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00998174 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00998182 edam:has_input signature:MF_00998 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKT7MF_00998171, 1, (STRLEN(?templateMotifCigarQ8ZKT7MF_00998171) - STRLEN(REPLACE(?templateMotifCigarQ8ZKT7MF_00998171, CONCAT('^(?:-*[^-]){', STR(((238 - ?templateMotifSequenceMatchBeginPositionQ8ZKT7172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKT7MF_00998173, 1, (STRLEN(?targetMotifMatchCigarQ8ZKT7MF_00998173) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKT7MF_00998173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKT7MF_00998173, 1, (STRLEN(?targetMotifMatchCigarQ8ZKT7MF_00998173) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKT7MF_00998173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), '')))), '[^-]', ''))) AS ?step2184) .
BIND(((?step2184 + ?targetMotifMatchRegionMatchBeginPositionMF_00998174) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t185) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00998a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch190 faldo:location ?templateMotifSequenceMatchRegionQ8ZKT7191 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKT7193 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKT7MF_00998186 .
?templateMotifSequenceMatchRegionQ8ZKT7191 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKT7192 .
?templateMotifSequenceMatchBeginQ8ZKT7192 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKT7187 ;
faldo:reference isoform:Q8ZKT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKT7193 edam:has_input signature:MF_00998 ;
rdf:type edam:operation_0300 .
?targetMotifMatch194 faldo:location ?targetMotifMatchRegionMatch195 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00998197 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKT7MF_00998188 .
?targetMotifMatchRegionMatch195 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00998196 .
?targetMotifMatchRegionMatchBeginMF_00998196 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00998189 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00998197 edam:has_input signature:MF_00998 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKT7MF_00998186, 1, (STRLEN(?templateMotifCigarQ8ZKT7MF_00998186) - STRLEN(REPLACE(?templateMotifCigarQ8ZKT7MF_00998186, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionQ8ZKT7187) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKT7MF_00998188, 1, (STRLEN(?targetMotifMatchCigarQ8ZKT7MF_00998188) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKT7MF_00998188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKT7MF_00998188, 1, (STRLEN(?targetMotifMatchCigarQ8ZKT7MF_00998188) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKT7MF_00998188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), '')))), '[^-]', ''))) AS ?step2199) .
BIND(((?step2199 + ?targetMotifMatchRegionMatchBeginPositionMF_00998189) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t200) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00998a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch205 faldo:location ?templateMotifSequenceMatchRegionQ8ZKT7206 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKT7208 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKT7MF_00998201 .
?templateMotifSequenceMatchRegionQ8ZKT7206 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKT7207 .
?templateMotifSequenceMatchBeginQ8ZKT7207 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKT7202 ;
faldo:reference isoform:Q8ZKT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKT7208 edam:has_input signature:MF_00998 ;
rdf:type edam:operation_0300 .
?targetMotifMatch209 faldo:location ?targetMotifMatchRegionMatch210 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00998212 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKT7MF_00998203 .
?targetMotifMatchRegionMatch210 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00998211 .
?targetMotifMatchRegionMatchBeginMF_00998211 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00998204 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00998212 edam:has_input signature:MF_00998 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKT7MF_00998201, 1, (STRLEN(?templateMotifCigarQ8ZKT7MF_00998201) - STRLEN(REPLACE(?templateMotifCigarQ8ZKT7MF_00998201, CONCAT('^(?:-*[^-]){', STR(((362 - ?templateMotifSequenceMatchBeginPositionQ8ZKT7202) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1213) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKT7MF_00998203, 1, (STRLEN(?targetMotifMatchCigarQ8ZKT7MF_00998203) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKT7MF_00998203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKT7MF_00998203, 1, (STRLEN(?targetMotifMatchCigarQ8ZKT7MF_00998203) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKT7MF_00998203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), '')))), '[^-]', ''))) AS ?step2214) .
BIND(((?step2214 + ?targetMotifMatchRegionMatchBeginPositionMF_00998204) - 1) AS ?thisPositionOn65) .
BIND(?thisPositionOn65 AS ?thisPositionOn66) .
BIND(?this AS ?pfs1t215) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_00998a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch220 faldo:location ?templateMotifSequenceMatchRegionQ8ZKT7221 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKT7223 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKT7MF_00998216 .
?templateMotifSequenceMatchRegionQ8ZKT7221 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKT7222 .
?templateMotifSequenceMatchBeginQ8ZKT7222 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKT7217 ;
faldo:reference isoform:Q8ZKT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKT7223 edam:has_input signature:MF_00998 ;
rdf:type edam:operation_0300 .
?targetMotifMatch224 faldo:location ?targetMotifMatchRegionMatch225 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00998227 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKT7MF_00998218 .
?targetMotifMatchRegionMatch225 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00998226 .
?targetMotifMatchRegionMatchBeginMF_00998226 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00998219 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00998227 edam:has_input signature:MF_00998 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKT7MF_00998216, 1, (STRLEN(?templateMotifCigarQ8ZKT7MF_00998216) - STRLEN(REPLACE(?templateMotifCigarQ8ZKT7MF_00998216, CONCAT('^(?:-*[^-]){', STR(((379 - ?templateMotifSequenceMatchBeginPositionQ8ZKT7217) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1228) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKT7MF_00998218, 1, (STRLEN(?targetMotifMatchCigarQ8ZKT7MF_00998218) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKT7MF_00998218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1228), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKT7MF_00998218, 1, (STRLEN(?targetMotifMatchCigarQ8ZKT7MF_00998218) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKT7MF_00998218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1228), '}'), '')))), '[^-]', ''))) AS ?step2229) .
BIND(((?step2229 + ?targetMotifMatchRegionMatchBeginPositionMF_00998219) - 1) AS ?thisPositionOn72) .
BIND(?thisPositionOn72 AS ?thisPositionOn73) .
BIND(?this AS ?pfs1t230) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse70) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_00998a68')) AS ?annotation68) .
BIND(?this AS ?pfs67) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch235 faldo:location ?templateMotifSequenceMatchRegionQ8ZKT7236 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZKT7238 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZKT7MF_00998231 .
?templateMotifSequenceMatchRegionQ8ZKT7236 faldo:begin ?templateMotifSequenceMatchBeginQ8ZKT7237 .
?templateMotifSequenceMatchBeginQ8ZKT7237 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZKT7232 ;
faldo:reference isoform:Q8ZKT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZKT7238 edam:has_input signature:MF_00998 ;
rdf:type edam:operation_0300 .
?targetMotifMatch239 faldo:location ?targetMotifMatchRegionMatch240 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00998242 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZKT7MF_00998233 .
?targetMotifMatchRegionMatch240 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00998241 .
?targetMotifMatchRegionMatchBeginMF_00998241 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00998234 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00998242 edam:has_input signature:MF_00998 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZKT7MF_00998231, 1, (STRLEN(?templateMotifCigarQ8ZKT7MF_00998231) - STRLEN(REPLACE(?templateMotifCigarQ8ZKT7MF_00998231, CONCAT('^(?:-*[^-]){', STR(((383 - ?templateMotifSequenceMatchBeginPositionQ8ZKT7232) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1243) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZKT7MF_00998233, 1, (STRLEN(?targetMotifMatchCigarQ8ZKT7MF_00998233) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKT7MF_00998233, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZKT7MF_00998233, 1, (STRLEN(?targetMotifMatchCigarQ8ZKT7MF_00998233) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZKT7MF_00998233, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), '')))), '[^-]', ''))) AS ?step2244) .
BIND(((?step2244 + ?targetMotifMatchRegionMatchBeginPositionMF_00998234) - 1) AS ?thisPositionOn79) .
BIND(?thisPositionOn79 AS ?thisPositionOn80) .
BIND(?this AS ?pfs1t245) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse77) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00998a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
}
"xsd:string |
