| http://purl.uniprot.org/unirules/MF_00999#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:349176 up:source unirule:MF_00999 .
_:349177 up:source unirule:MF_00999 .
_:349178 up:source unirule:MF_00999 .
_:349179 up:source unirule:MF_00999 .
_:349180 up:source unirule:MF_00999 .
_:349181 up:source unirule:MF_00999 .
_:349182 up:source unirule:MF_00999 .
_:349183 up:source unirule:MF_00999 .
_:349184 up:source unirule:MF_00999 .
_:349185 up:source unirule:MF_00999 .
_:349186 up:source unirule:MF_00999 .
_:349187 up:source unirule:MF_00999 .
_:349188 up:source unirule:MF_00999 .
_:349189 up:source unirule:MF_00999 .
_:349190 up:source unirule:MF_00999 .
_:349191 up:source unirule:MF_00999 .
_:349192 up:source unirule:MF_00999 .
_:349193 up:source unirule:MF_00999 .
_:349194 up:source unirule:MF_00999 .
_:349195 up:source unirule:MF_00999 .
_:349196 up:source unirule:MF_00999 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ;
up:classifiedWith GO:0061594 ,
GO:1902777 ,
keyword:119 ,
keyword:418 ,
keyword:547 ,
keyword:67 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.1.184' ;
up:fullName 'Sulfofructose kinase' ;
up:shortName 'SF kinase' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Phosphorylates 6-deoxy-6-sulfo-D-fructose (SF) to 6-deoxy-6-sulfo-D-fructose 1-phosphate (SFP).' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the carbohydrate kinase PfkB family.' .
?pfs5 up:annotation ?annotation6 .
?annotation6 faldo:begin ?pfsb7 ;
faldo:end ?pfse8 ;
up:ligand ?ligand9 ;
rdf:type up:Binding_Site_Annotation .
?pfsb7 faldo:position ?thisPositionOn10 ;
rdf:type faldo:ExactPosition .
?pfse8 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?ligand9 rdfs:subClassOf chebi:77133 .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:77133 .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:77133 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:77133 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:77133 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf chebi:30616 .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:30616 .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:30616 .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf chebi:30616 .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation .
?pfsb70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?ligand72 rdfs:subClassOf chebi:77133 .
_:349197 a rdf:Statement ;
up:attribution _:349176 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:349198 a rdf:Statement ;
up:attribution _:349177 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:349199 a rdf:Statement ;
up:attribution _:349178 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:349200 a rdf:Statement ;
up:attribution _:349179 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:349201 a rdf:Statement ;
up:attribution _:349180 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:349202 a rdf:Statement ;
up:attribution _:349181 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:119 .
_:349203 a rdf:Statement ;
up:attribution _:349182 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:349204 a rdf:Statement ;
up:attribution _:349183 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:349205 a rdf:Statement ;
up:attribution _:349184 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:349206 a rdf:Statement ;
up:attribution _:349185 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0061594 .
_:349207 a rdf:Statement ;
up:attribution _:349186 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:1902777 .
_:349208 a rdf:Statement ;
up:source unirule:MF_00999 ;
rdf:subject ?pfs5 ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:349209 a rdf:Statement ;
up:attribution _:349187 ;
rdf:subject ?pfs5 ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:349210 a rdf:Statement ;
up:source unirule:MF_00999 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:349211 a rdf:Statement ;
up:attribution _:349188 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:349212 a rdf:Statement ;
up:source unirule:MF_00999 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:349213 a rdf:Statement ;
up:attribution _:349189 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:349214 a rdf:Statement ;
up:source unirule:MF_00999 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:349215 a rdf:Statement ;
up:attribution _:349190 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:349216 a rdf:Statement ;
up:source unirule:MF_00999 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:349217 a rdf:Statement ;
up:attribution _:349191 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:349218 a rdf:Statement ;
up:source unirule:MF_00999 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:349219 a rdf:Statement ;
up:attribution _:349192 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:349220 a rdf:Statement ;
up:source unirule:MF_00999 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:349221 a rdf:Statement ;
up:attribution _:349193 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:349222 a rdf:Statement ;
up:source unirule:MF_00999 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:349223 a rdf:Statement ;
up:attribution _:349194 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:349224 a rdf:Statement ;
up:source unirule:MF_00999 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:349225 a rdf:Statement ;
up:attribution _:349195 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:349226 a rdf:Statement ;
up:source unirule:MF_00999 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:349227 a rdf:Statement ;
up:attribution _:349196 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00999
#Rule MF_00999 Created by:? on:2014-03-31 Modified by:Catherine Rivoire on:2023-07-05
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00999 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_00999a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00999a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_00999a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00999a4')) AS ?annotation4) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch79 faldo:location ?templateMotifSequenceMatchRegionP3214380 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3214382 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32143MF_0099975 .
?templateMotifSequenceMatchRegionP3214380 faldo:begin ?templateMotifSequenceMatchBeginP3214381 .
?templateMotifSequenceMatchBeginP3214381 faldo:position ?templateMotifSequenceMatchBeginPositionP3214376 ;
faldo:reference isoform:P32143-1 .
?templateMotifSequenceProfileAlignmentOperationP3214382 edam:has_input signature:MF_00999 ;
rdf:type edam:operation_0300 .
?targetMotifMatch83 faldo:location ?targetMotifMatchRegionMatch84 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0099986 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32143MF_0099977 .
?targetMotifMatchRegionMatch84 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0099985 .
?targetMotifMatchRegionMatchBeginMF_0099985 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0099978 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0099986 edam:has_input signature:MF_00999 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32143MF_0099975, 1, (STRLEN(?templateMotifCigarP32143MF_0099975) - STRLEN(REPLACE(?templateMotifCigarP32143MF_0099975, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionP3214376) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32143MF_0099977, 1, (STRLEN(?targetMotifMatchCigarP32143MF_0099977) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_0099977, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32143MF_0099977, 1, (STRLEN(?targetMotifMatchCigarP32143MF_0099977) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_0099977, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) .
BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0099978) - 1) AS ?thisPositionOn10) .
BIND(?thisPositionOn10 AS ?thisPositionOn11) .
BIND(?this AS ?pfs1t89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb7) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse8) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn10, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00999a6')) AS ?annotation6) .
BIND(?this AS ?pfs5) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch94 faldo:location ?templateMotifSequenceMatchRegionP3214395 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3214397 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32143MF_0099990 .
?templateMotifSequenceMatchRegionP3214395 faldo:begin ?templateMotifSequenceMatchBeginP3214396 .
?templateMotifSequenceMatchBeginP3214396 faldo:position ?templateMotifSequenceMatchBeginPositionP3214391 ;
faldo:reference isoform:P32143-1 .
?templateMotifSequenceProfileAlignmentOperationP3214397 edam:has_input signature:MF_00999 ;
rdf:type edam:operation_0300 .
?targetMotifMatch98 faldo:location ?targetMotifMatchRegionMatch99 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00999101 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32143MF_0099992 .
?targetMotifMatchRegionMatch99 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00999100 .
?targetMotifMatchRegionMatchBeginMF_00999100 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0099993 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00999101 edam:has_input signature:MF_00999 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32143MF_0099990, 1, (STRLEN(?templateMotifCigarP32143MF_0099990) - STRLEN(REPLACE(?templateMotifCigarP32143MF_0099990, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionP3214391) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32143MF_0099992, 1, (STRLEN(?targetMotifMatchCigarP32143MF_0099992) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_0099992, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32143MF_0099992, 1, (STRLEN(?targetMotifMatchCigarP32143MF_0099992) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_0099992, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0099993) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00999a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionP32143110 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32143112 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32143MF_00999105 .
?templateMotifSequenceMatchRegionP32143110 faldo:begin ?templateMotifSequenceMatchBeginP32143111 .
?templateMotifSequenceMatchBeginP32143111 faldo:position ?templateMotifSequenceMatchBeginPositionP32143106 ;
faldo:reference isoform:P32143-1 .
?templateMotifSequenceProfileAlignmentOperationP32143112 edam:has_input signature:MF_00999 ;
rdf:type edam:operation_0300 .
?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00999116 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32143MF_00999107 .
?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00999115 .
?targetMotifMatchRegionMatchBeginMF_00999115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00999108 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00999116 edam:has_input signature:MF_00999 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32143MF_00999105, 1, (STRLEN(?templateMotifCigarP32143MF_00999105) - STRLEN(REPLACE(?templateMotifCigarP32143MF_00999105, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionP32143106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32143MF_00999107, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999107) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32143MF_00999107, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999107) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) .
BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_00999108) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00999a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch124 faldo:location ?templateMotifSequenceMatchRegionP32143125 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32143127 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32143MF_00999120 .
?templateMotifSequenceMatchRegionP32143125 faldo:begin ?templateMotifSequenceMatchBeginP32143126 .
?templateMotifSequenceMatchBeginP32143126 faldo:position ?templateMotifSequenceMatchBeginPositionP32143121 ;
faldo:reference isoform:P32143-1 .
?templateMotifSequenceProfileAlignmentOperationP32143127 edam:has_input signature:MF_00999 ;
rdf:type edam:operation_0300 .
?targetMotifMatch128 faldo:location ?targetMotifMatchRegionMatch129 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00999131 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32143MF_00999122 .
?targetMotifMatchRegionMatch129 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00999130 .
?targetMotifMatchRegionMatchBeginMF_00999130 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00999123 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00999131 edam:has_input signature:MF_00999 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32143MF_00999120, 1, (STRLEN(?templateMotifCigarP32143MF_00999120) - STRLEN(REPLACE(?templateMotifCigarP32143MF_00999120, CONCAT('^(?:-*[^-]){', STR(((95 - ?templateMotifSequenceMatchBeginPositionP32143121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32143MF_00999122, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999122) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32143MF_00999122, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999122) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) .
BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_00999123) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t134) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00999a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionP32143140 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32143142 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32143MF_00999135 .
?templateMotifSequenceMatchRegionP32143140 faldo:begin ?templateMotifSequenceMatchBeginP32143141 .
?templateMotifSequenceMatchBeginP32143141 faldo:position ?templateMotifSequenceMatchBeginPositionP32143136 ;
faldo:reference isoform:P32143-1 .
?templateMotifSequenceProfileAlignmentOperationP32143142 edam:has_input signature:MF_00999 ;
rdf:type edam:operation_0300 .
?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00999146 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32143MF_00999137 .
?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00999145 .
?targetMotifMatchRegionMatchBeginMF_00999145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00999138 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00999146 edam:has_input signature:MF_00999 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32143MF_00999135, 1, (STRLEN(?templateMotifCigarP32143MF_00999135) - STRLEN(REPLACE(?templateMotifCigarP32143MF_00999135, CONCAT('^(?:-*[^-]){', STR(((138 - ?templateMotifSequenceMatchBeginPositionP32143136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32143MF_00999137, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999137) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32143MF_00999137, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999137) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) .
BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_00999138) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00999a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionP32143155 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32143157 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32143MF_00999150 .
?templateMotifSequenceMatchRegionP32143155 faldo:begin ?templateMotifSequenceMatchBeginP32143156 .
?templateMotifSequenceMatchBeginP32143156 faldo:position ?templateMotifSequenceMatchBeginPositionP32143151 ;
faldo:reference isoform:P32143-1 .
?templateMotifSequenceProfileAlignmentOperationP32143157 edam:has_input signature:MF_00999 ;
rdf:type edam:operation_0300 .
?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00999161 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32143MF_00999152 .
?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00999160 .
?targetMotifMatchRegionMatchBeginMF_00999160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00999153 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00999161 edam:has_input signature:MF_00999 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32143MF_00999150, 1, (STRLEN(?templateMotifCigarP32143MF_00999150) - STRLEN(REPLACE(?templateMotifCigarP32143MF_00999150, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionP32143151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32143MF_00999152, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999152) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32143MF_00999152, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999152) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) .
BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_00999153) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t164) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_00999a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch169 faldo:location ?templateMotifSequenceMatchRegionP32143170 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32143172 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32143MF_00999165 .
?templateMotifSequenceMatchRegionP32143170 faldo:begin ?templateMotifSequenceMatchBeginP32143171 .
?templateMotifSequenceMatchBeginP32143171 faldo:position ?templateMotifSequenceMatchBeginPositionP32143166 ;
faldo:reference isoform:P32143-1 .
?templateMotifSequenceProfileAlignmentOperationP32143172 edam:has_input signature:MF_00999 ;
rdf:type edam:operation_0300 .
?targetMotifMatch173 faldo:location ?targetMotifMatchRegionMatch174 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00999176 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32143MF_00999167 .
?targetMotifMatchRegionMatch174 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00999175 .
?targetMotifMatchRegionMatchBeginMF_00999175 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00999168 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00999176 edam:has_input signature:MF_00999 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32143MF_00999165, 1, (STRLEN(?templateMotifCigarP32143MF_00999165) - STRLEN(REPLACE(?templateMotifCigarP32143MF_00999165, CONCAT('^(?:-*[^-]){', STR(((214 - ?templateMotifSequenceMatchBeginPositionP32143166) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32143MF_00999167, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999167) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32143MF_00999167, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999167) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), '')))), '[^-]', ''))) AS ?step2178) .
BIND(((?step2178 + ?targetMotifMatchRegionMatchBeginPositionMF_00999168) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t179) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00999a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch184 faldo:location ?templateMotifSequenceMatchRegionP32143185 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32143187 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32143MF_00999180 .
?templateMotifSequenceMatchRegionP32143185 faldo:begin ?templateMotifSequenceMatchBeginP32143186 .
?templateMotifSequenceMatchBeginP32143186 faldo:position ?templateMotifSequenceMatchBeginPositionP32143181 ;
faldo:reference isoform:P32143-1 .
?templateMotifSequenceProfileAlignmentOperationP32143187 edam:has_input signature:MF_00999 ;
rdf:type edam:operation_0300 .
?targetMotifMatch188 faldo:location ?targetMotifMatchRegionMatch189 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00999191 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32143MF_00999182 .
?targetMotifMatchRegionMatch189 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00999190 .
?targetMotifMatchRegionMatchBeginMF_00999190 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00999183 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00999191 edam:has_input signature:MF_00999 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32143MF_00999180, 1, (STRLEN(?templateMotifCigarP32143MF_00999180) - STRLEN(REPLACE(?templateMotifCigarP32143MF_00999180, CONCAT('^(?:-*[^-]){', STR(((217 - ?templateMotifSequenceMatchBeginPositionP32143181) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32143MF_00999182, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999182) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32143MF_00999182, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999182) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) .
BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_00999183) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t194) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00999a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch199 faldo:location ?templateMotifSequenceMatchRegionP32143200 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32143202 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32143MF_00999195 .
?templateMotifSequenceMatchRegionP32143200 faldo:begin ?templateMotifSequenceMatchBeginP32143201 .
?templateMotifSequenceMatchBeginP32143201 faldo:position ?templateMotifSequenceMatchBeginPositionP32143196 ;
faldo:reference isoform:P32143-1 .
?templateMotifSequenceProfileAlignmentOperationP32143202 edam:has_input signature:MF_00999 ;
rdf:type edam:operation_0300 .
?targetMotifMatch203 faldo:location ?targetMotifMatchRegionMatch204 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00999206 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32143MF_00999197 .
?targetMotifMatchRegionMatch204 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00999205 .
?targetMotifMatchRegionMatchBeginMF_00999205 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00999198 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00999206 edam:has_input signature:MF_00999 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32143MF_00999195, 1, (STRLEN(?templateMotifCigarP32143MF_00999195) - STRLEN(REPLACE(?templateMotifCigarP32143MF_00999195, CONCAT('^(?:-*[^-]){', STR(((243 - ?templateMotifSequenceMatchBeginPositionP32143196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1207) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32143MF_00999197, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999197) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32143MF_00999197, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999197) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), '')))), '[^-]', ''))) AS ?step2208) .
BIND(((?step2208 + ?targetMotifMatchRegionMatchBeginPositionMF_00999198) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs1t209) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00999a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch214 faldo:location ?templateMotifSequenceMatchRegionP32143215 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32143217 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32143MF_00999210 .
?templateMotifSequenceMatchRegionP32143215 faldo:begin ?templateMotifSequenceMatchBeginP32143216 .
?templateMotifSequenceMatchBeginP32143216 faldo:position ?templateMotifSequenceMatchBeginPositionP32143211 ;
faldo:reference isoform:P32143-1 .
?templateMotifSequenceProfileAlignmentOperationP32143217 edam:has_input signature:MF_00999 ;
rdf:type edam:operation_0300 .
?targetMotifMatch218 faldo:location ?targetMotifMatchRegionMatch219 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00999221 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32143MF_00999212 .
?targetMotifMatchRegionMatch219 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00999220 .
?targetMotifMatchRegionMatchBeginMF_00999220 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00999213 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00999221 edam:has_input signature:MF_00999 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32143MF_00999210, 1, (STRLEN(?templateMotifCigarP32143MF_00999210) - STRLEN(REPLACE(?templateMotifCigarP32143MF_00999210, CONCAT('^(?:-*[^-]){', STR(((244 - ?templateMotifSequenceMatchBeginPositionP32143211) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1222) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32143MF_00999212, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999212) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32143MF_00999212, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999212) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), '')))), '[^-]', ''))) AS ?step2223) .
BIND(((?step2223 + ?targetMotifMatchRegionMatchBeginPositionMF_00999213) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs1t224) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00999a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
}
"xsd:string |
