| http://purl.uniprot.org/unirules/MF_01012#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:353956 up:source unirule:MF_01012 .
_:353957 up:source unirule:MF_01012 .
_:353958 up:source unirule:MF_01012 .
_:353959 up:source unirule:MF_01012 .
_:353960 up:source unirule:MF_01012 .
_:353961 up:source unirule:MF_01012 .
_:353962 up:source unirule:MF_01012 .
_:353963 up:source unirule:MF_01012 .
_:353964 up:source unirule:MF_01012 .
_:353965 up:source unirule:MF_01012 .
_:353966 up:source unirule:MF_01012 .
_:353967 up:source unirule:MF_01012 .
_:353968 up:source unirule:MF_01012 .
_:353969 up:source unirule:MF_01012 .
_:353970 up:source unirule:MF_01012 .
_:353971 up:source unirule:MF_01012 .
_:353972 up:source unirule:MF_01012 .
_:353973 up:source unirule:MF_01012 .
_:353974 up:source unirule:MF_01012 .
_:353975 up:source unirule:MF_01012 .
_:353976 up:source unirule:MF_01012 .
_:353977 up:source unirule:MF_01012 .
_:353978 up:source unirule:MF_01012 .
_:353979 up:source unirule:MF_01012 .
_:353980 up:source unirule:MF_01012 .
_:353981 up:source unirule:MF_01012 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0031167 ,
GO:0070041 ,
keyword:489 ,
keyword:698 ,
keyword:808 ,
keyword:949 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.1.189' ;
up:fullName '23S rRNA (uracil(747)-C(5))-methyltransferase RlmC' ;
rdf:type up:Structured_Name .
?name1 up:fullName '23S rRNA(m5U747)-methyltransferase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'rlmC' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily.' .
?case7 up:classifiedWith GO:0005506 ,
keyword:408 ,
keyword:411 ,
keyword:479 ,
keyword:4 .
?pfs8 up:annotation ?annotation9 ,
?annotation15 ,
?annotation21 ,
?annotation27 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:49883 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:49883 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:49883 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:49883 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:59789 .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf chebi:59789 .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf chebi:59789 .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
up:ligand ?ligand64 ;
rdf:type up:Binding_Site_Annotation .
?pfsb62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?ligand64 rdfs:subClassOf chebi:59789 .
_:353982 a rdf:Statement ;
up:attribution _:353956 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:353983 a rdf:Statement ;
up:attribution _:353957 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:353984 a rdf:Statement ;
up:attribution _:353958 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:353985 a rdf:Statement ;
up:attribution _:353959 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:353986 a rdf:Statement ;
up:attribution _:353960 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:353987 a rdf:Statement ;
up:attribution _:353961 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:353988 a rdf:Statement ;
up:attribution _:353962 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:353989 a rdf:Statement ;
up:attribution _:353963 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:698 .
_:353990 a rdf:Statement ;
up:attribution _:353964 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:353991 a rdf:Statement ;
up:attribution _:353965 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:353992 a rdf:Statement ;
up:attribution _:353966 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070041 .
_:353993 a rdf:Statement ;
up:attribution _:353967 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0031167 .
_:353994 a rdf:Statement ;
up:attribution _:353968 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:353995 a rdf:Statement ;
up:attribution _:353969 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:353996 a rdf:Statement ;
up:attribution _:353970 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:353997 a rdf:Statement ;
up:attribution _:353971 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:353998 a rdf:Statement ;
up:attribution _:353972 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005506 .
_:353999 a rdf:Statement ;
up:source unirule:MF_01012 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:354000 a rdf:Statement ;
up:attribution _:353973 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:354001 a rdf:Statement ;
up:source unirule:MF_01012 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:354002 a rdf:Statement ;
up:attribution _:353974 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:354003 a rdf:Statement ;
up:source unirule:MF_01012 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:354004 a rdf:Statement ;
up:attribution _:353975 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:354005 a rdf:Statement ;
up:source unirule:MF_01012 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:354006 a rdf:Statement ;
up:attribution _:353976 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:354007 a rdf:Statement ;
up:source unirule:MF_01012 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:354008 a rdf:Statement ;
up:attribution _:353977 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:354009 a rdf:Statement ;
up:source unirule:MF_01012 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:354010 a rdf:Statement ;
up:attribution _:353978 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:354011 a rdf:Statement ;
up:source unirule:MF_01012 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:354012 a rdf:Statement ;
up:attribution _:353979 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:354013 a rdf:Statement ;
up:source unirule:MF_01012 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:354014 a rdf:Statement ;
up:attribution _:353980 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:354015 a rdf:Statement ;
up:source unirule:MF_01012 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:354016 a rdf:Statement ;
up:attribution _:353981 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01012
#Rule MF_01012 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01012 .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(URI(CONCAT(STR(?this), '#MF_01012a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01012a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01012a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01012a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01012a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch71 faldo:location ?templateMotifSequenceMatchRegionP7581772 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7581774 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP75817MF_0101267 .
?templateMotifSequenceMatchRegionP7581772 faldo:begin ?templateMotifSequenceMatchBeginP7581773 .
?templateMotifSequenceMatchBeginP7581773 faldo:position ?templateMotifSequenceMatchBeginPositionP7581768 ;
faldo:reference isoform:P75817-1 .
?templateMotifSequenceProfileAlignmentOperationP7581774 edam:has_input signature:MF_01012 ;
rdf:type edam:operation_0300 .
?targetMotifMatch75 faldo:location ?targetMotifMatchRegionMatch76 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0101278 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP75817MF_0101269 .
?targetMotifMatchRegionMatch76 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0101277 .
?targetMotifMatchRegionMatchBeginMF_0101277 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0101270 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0101278 edam:has_input signature:MF_01012 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75817MF_0101267, 1, (STRLEN(?templateMotifCigarP75817MF_0101267) - STRLEN(REPLACE(?templateMotifCigarP75817MF_0101267, CONCAT('^(?:-*[^-]){', STR(((3 - ?templateMotifSequenceMatchBeginPositionP7581768) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75817MF_0101269, 1, (STRLEN(?targetMotifMatchCigarP75817MF_0101269) - STRLEN(REPLACE(?targetMotifMatchCigarP75817MF_0101269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75817MF_0101269, 1, (STRLEN(?targetMotifMatchCigarP75817MF_0101269) - STRLEN(REPLACE(?targetMotifMatchCigarP75817MF_0101269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) .
BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0101270) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75817MF_0101267, 1, (STRLEN(?templateMotifCigarP75817MF_0101267) - STRLEN(REPLACE(?templateMotifCigarP75817MF_0101267, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP7581768) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75817MF_0101269, 1, (STRLEN(?targetMotifMatchCigarP75817MF_0101269) - STRLEN(REPLACE(?targetMotifMatchCigarP75817MF_0101269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75817MF_0101269, 1, (STRLEN(?targetMotifMatchCigarP75817MF_0101269) - STRLEN(REPLACE(?targetMotifMatchCigarP75817MF_0101269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) .
BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0101270) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75817MF_0101267, 1, (STRLEN(?templateMotifCigarP75817MF_0101267) - STRLEN(REPLACE(?templateMotifCigarP75817MF_0101267, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionP7581768) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75817MF_0101269, 1, (STRLEN(?targetMotifMatchCigarP75817MF_0101269) - STRLEN(REPLACE(?targetMotifMatchCigarP75817MF_0101269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75817MF_0101269, 1, (STRLEN(?targetMotifMatchCigarP75817MF_0101269) - STRLEN(REPLACE(?targetMotifMatchCigarP75817MF_0101269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0101270) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75817MF_0101267, 1, (STRLEN(?templateMotifCigarP75817MF_0101267) - STRLEN(REPLACE(?templateMotifCigarP75817MF_0101267, CONCAT('^(?:-*[^-]){', STR(((87 - ?templateMotifSequenceMatchBeginPositionP7581768) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75817MF_0101269, 1, (STRLEN(?targetMotifMatchCigarP75817MF_0101269) - STRLEN(REPLACE(?targetMotifMatchCigarP75817MF_0101269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75817MF_0101269, 1, (STRLEN(?targetMotifMatchCigarP75817MF_0101269) - STRLEN(REPLACE(?targetMotifMatchCigarP75817MF_0101269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0101270) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'C')) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch95 faldo:location ?templateMotifSequenceMatchRegionP7581796 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7581798 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP75817MF_0101291 .
?templateMotifSequenceMatchRegionP7581796 faldo:begin ?templateMotifSequenceMatchBeginP7581797 .
?templateMotifSequenceMatchBeginP7581797 faldo:position ?templateMotifSequenceMatchBeginPositionP7581792 ;
faldo:reference isoform:P75817-1 .
?templateMotifSequenceProfileAlignmentOperationP7581798 edam:has_input signature:MF_01012 ;
rdf:type edam:operation_0300 .
?targetMotifMatch99 faldo:location ?targetMotifMatchRegionMatch100 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01012102 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP75817MF_0101293 .
?targetMotifMatchRegionMatch100 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01012101 .
?targetMotifMatchRegionMatchBeginMF_01012101 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0101294 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01012102 edam:has_input signature:MF_01012 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75817MF_0101291, 1, (STRLEN(?templateMotifCigarP75817MF_0101291) - STRLEN(REPLACE(?templateMotifCigarP75817MF_0101291, CONCAT('^(?:-*[^-]){', STR(((334 - ?templateMotifSequenceMatchBeginPositionP7581792) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75817MF_0101293, 1, (STRLEN(?targetMotifMatchCigarP75817MF_0101293) - STRLEN(REPLACE(?targetMotifMatchCigarP75817MF_0101293, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75817MF_0101293, 1, (STRLEN(?targetMotifMatchCigarP75817MF_0101293) - STRLEN(REPLACE(?targetMotifMatchCigarP75817MF_0101293, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) .
BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0101294) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs2t105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01012a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch110 faldo:location ?templateMotifSequenceMatchRegionP75817111 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP75817113 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP75817MF_01012106 .
?templateMotifSequenceMatchRegionP75817111 faldo:begin ?templateMotifSequenceMatchBeginP75817112 .
?templateMotifSequenceMatchBeginP75817112 faldo:position ?templateMotifSequenceMatchBeginPositionP75817107 ;
faldo:reference isoform:P75817-1 .
?templateMotifSequenceProfileAlignmentOperationP75817113 edam:has_input signature:MF_01012 ;
rdf:type edam:operation_0300 .
?targetMotifMatch114 faldo:location ?targetMotifMatchRegionMatch115 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01012117 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP75817MF_01012108 .
?targetMotifMatchRegionMatch115 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01012116 .
?targetMotifMatchRegionMatchBeginMF_01012116 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01012109 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01012117 edam:has_input signature:MF_01012 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75817MF_01012106, 1, (STRLEN(?templateMotifCigarP75817MF_01012106) - STRLEN(REPLACE(?templateMotifCigarP75817MF_01012106, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionP75817107) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1118) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75817MF_01012108, 1, (STRLEN(?targetMotifMatchCigarP75817MF_01012108) - STRLEN(REPLACE(?targetMotifMatchCigarP75817MF_01012108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75817MF_01012108, 1, (STRLEN(?targetMotifMatchCigarP75817MF_01012108) - STRLEN(REPLACE(?targetMotifMatchCigarP75817MF_01012108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), '')))), '[^-]', ''))) AS ?step2119) .
BIND(((?step2119 + ?targetMotifMatchRegionMatchBeginPositionMF_01012109) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs2t120) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01012a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch125 faldo:location ?templateMotifSequenceMatchRegionP75817126 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP75817128 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP75817MF_01012121 .
?templateMotifSequenceMatchRegionP75817126 faldo:begin ?templateMotifSequenceMatchBeginP75817127 .
?templateMotifSequenceMatchBeginP75817127 faldo:position ?templateMotifSequenceMatchBeginPositionP75817122 ;
faldo:reference isoform:P75817-1 .
?templateMotifSequenceProfileAlignmentOperationP75817128 edam:has_input signature:MF_01012 ;
rdf:type edam:operation_0300 .
?targetMotifMatch129 faldo:location ?targetMotifMatchRegionMatch130 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01012132 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP75817MF_01012123 .
?targetMotifMatchRegionMatch130 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01012131 .
?targetMotifMatchRegionMatchBeginMF_01012131 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01012124 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01012132 edam:has_input signature:MF_01012 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75817MF_01012121, 1, (STRLEN(?templateMotifCigarP75817MF_01012121) - STRLEN(REPLACE(?templateMotifCigarP75817MF_01012121, CONCAT('^(?:-*[^-]){', STR(((241 - ?templateMotifSequenceMatchBeginPositionP75817122) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1133) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75817MF_01012123, 1, (STRLEN(?targetMotifMatchCigarP75817MF_01012123) - STRLEN(REPLACE(?targetMotifMatchCigarP75817MF_01012123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75817MF_01012123, 1, (STRLEN(?targetMotifMatchCigarP75817MF_01012123) - STRLEN(REPLACE(?targetMotifMatchCigarP75817MF_01012123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), '')))), '[^-]', ''))) AS ?step2134) .
BIND(((?step2134 + ?targetMotifMatchRegionMatchBeginPositionMF_01012124) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs2t135) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'F')) .
BIND(URI(CONCAT(STR(?this), '#MF_01012a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch140 faldo:location ?templateMotifSequenceMatchRegionP75817141 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP75817143 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP75817MF_01012136 .
?templateMotifSequenceMatchRegionP75817141 faldo:begin ?templateMotifSequenceMatchBeginP75817142 .
?templateMotifSequenceMatchBeginP75817142 faldo:position ?templateMotifSequenceMatchBeginPositionP75817137 ;
faldo:reference isoform:P75817-1 .
?templateMotifSequenceProfileAlignmentOperationP75817143 edam:has_input signature:MF_01012 ;
rdf:type edam:operation_0300 .
?targetMotifMatch144 faldo:location ?targetMotifMatchRegionMatch145 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01012147 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP75817MF_01012138 .
?targetMotifMatchRegionMatch145 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01012146 .
?targetMotifMatchRegionMatchBeginMF_01012146 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01012139 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01012147 edam:has_input signature:MF_01012 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75817MF_01012136, 1, (STRLEN(?templateMotifCigarP75817MF_01012136) - STRLEN(REPLACE(?templateMotifCigarP75817MF_01012136, CONCAT('^(?:-*[^-]){', STR(((262 - ?templateMotifSequenceMatchBeginPositionP75817137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75817MF_01012138, 1, (STRLEN(?targetMotifMatchCigarP75817MF_01012138) - STRLEN(REPLACE(?targetMotifMatchCigarP75817MF_01012138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75817MF_01012138, 1, (STRLEN(?targetMotifMatchCigarP75817MF_01012138) - STRLEN(REPLACE(?targetMotifMatchCigarP75817MF_01012138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), '')))), '[^-]', ''))) AS ?step2149) .
BIND(((?step2149 + ?targetMotifMatchRegionMatchBeginPositionMF_01012139) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs2t150) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01012a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch155 faldo:location ?templateMotifSequenceMatchRegionP75817156 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP75817158 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP75817MF_01012151 .
?templateMotifSequenceMatchRegionP75817156 faldo:begin ?templateMotifSequenceMatchBeginP75817157 .
?templateMotifSequenceMatchBeginP75817157 faldo:position ?templateMotifSequenceMatchBeginPositionP75817152 ;
faldo:reference isoform:P75817-1 .
?templateMotifSequenceProfileAlignmentOperationP75817158 edam:has_input signature:MF_01012 ;
rdf:type edam:operation_0300 .
?targetMotifMatch159 faldo:location ?targetMotifMatchRegionMatch160 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01012162 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP75817MF_01012153 .
?targetMotifMatchRegionMatch160 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01012161 .
?targetMotifMatchRegionMatchBeginMF_01012161 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01012154 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01012162 edam:has_input signature:MF_01012 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75817MF_01012151, 1, (STRLEN(?templateMotifCigarP75817MF_01012151) - STRLEN(REPLACE(?templateMotifCigarP75817MF_01012151, CONCAT('^(?:-*[^-]){', STR(((307 - ?templateMotifSequenceMatchBeginPositionP75817152) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75817MF_01012153, 1, (STRLEN(?targetMotifMatchCigarP75817MF_01012153) - STRLEN(REPLACE(?targetMotifMatchCigarP75817MF_01012153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75817MF_01012153, 1, (STRLEN(?targetMotifMatchCigarP75817MF_01012153) - STRLEN(REPLACE(?targetMotifMatchCigarP75817MF_01012153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), '')))), '[^-]', ''))) AS ?step2164) .
BIND(((?step2164 + ?targetMotifMatchRegionMatchBeginPositionMF_01012154) - 1) AS ?thisPositionOn65) .
BIND(?thisPositionOn65 AS ?thisPositionOn66) .
BIND(?this AS ?pfs2t165) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01012a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag166) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag166, ?UNBOUND_VARIABLE) AS ?case7) .
}
"xsd:string |
