| http://purl.uniprot.org/unirules/MF_01039#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:365225 up:source unirule:MF_01039 .
_:365226 up:source unirule:MF_01039 .
_:365227 up:source unirule:MF_01039 .
_:365228 up:source unirule:MF_01039 .
_:365229 up:source unirule:MF_01039 .
_:365230 up:source unirule:MF_01039 .
_:365231 up:source unirule:MF_01039 .
_:365232 up:source unirule:MF_01039 .
_:365233 up:source unirule:MF_01039 .
_:365234 up:source unirule:MF_01039 .
_:365235 up:source unirule:MF_01039 .
_:365236 up:source unirule:MF_01039 .
_:365237 up:source unirule:MF_01039 .
_:365238 up:source unirule:MF_01039 .
_:365239 up:source unirule:MF_01039 .
_:365240 up:source unirule:MF_01039 .
_:365241 up:source unirule:MF_01039 .
_:365242 up:source unirule:MF_01039 .
_:365243 up:source unirule:MF_01039 .
_:365244 up:source unirule:MF_01039 .
_:365245 up:source unirule:MF_01039 .
_:365246 up:source unirule:MF_01039 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0004619 ,
GO:0006094 ,
GO:0006096 ,
keyword:312 ,
keyword:324 ,
keyword:413 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.4.2.11' ;
up:fullName '2,3-bisphosphoglycerate-dependent phosphoglycerate mutase' ;
up:shortName 'BPG-dependent PGAM' ,
'PGAM' ,
'Phosphoglyceromutase' ,
'dPGM' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'gpmA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 3/5.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the phosphoglycerate mutase family. BPG-dependent PGAM subfamily.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf ?molecule13 .
?molecule13 rdfs:label 'substrate' .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf ?molecule21 .
?molecule21 rdfs:label 'substrate' .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf ?molecule29 .
?molecule29 rdfs:label 'substrate' .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf ?molecule37 .
?molecule37 rdfs:label 'substrate' .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf ?molecule45 .
?molecule45 rdfs:label 'substrate' .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Tele-phosphohistidine intermediate' .
?pfsb50 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor/acceptor' .
?pfsb56 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
up:ligand ?ligand64 ;
rdf:type up:Binding_Site_Annotation .
?pfsb62 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?ligand64 rdfs:subClassOf ?molecule65 .
?molecule65 rdfs:label 'substrate' .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation .
?pfsb70 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?ligand72 rdfs:subClassOf ?molecule73 .
?molecule73 rdfs:label 'substrate' .
?pfs76 up:annotation ?annotation77 .
?annotation77 faldo:begin ?pfsb78 ;
faldo:end ?pfse79 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb78 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse79 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
_:365247 a rdf:Statement ;
up:attribution _:365225 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:365248 a rdf:Statement ;
up:attribution _:365226 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:365249 a rdf:Statement ;
up:attribution _:365227 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:365250 a rdf:Statement ;
up:attribution _:365228 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:365251 a rdf:Statement ;
up:attribution _:365229 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:365252 a rdf:Statement ;
up:attribution _:365230 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:365253 a rdf:Statement ;
up:attribution _:365231 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:365254 a rdf:Statement ;
up:attribution _:365232 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:324 .
_:365255 a rdf:Statement ;
up:attribution _:365233 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:312 .
_:365256 a rdf:Statement ;
up:attribution _:365234 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004619 .
_:365257 a rdf:Statement ;
up:attribution _:365235 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006094 .
_:365258 a rdf:Statement ;
up:attribution _:365236 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006096 .
_:365259 a rdf:Statement ;
up:source unirule:MF_01039 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:365260 a rdf:Statement ;
up:attribution _:365237 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:365261 a rdf:Statement ;
up:source unirule:MF_01039 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:365262 a rdf:Statement ;
up:attribution _:365238 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:365263 a rdf:Statement ;
up:source unirule:MF_01039 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:365264 a rdf:Statement ;
up:attribution _:365239 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:365265 a rdf:Statement ;
up:source unirule:MF_01039 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:365266 a rdf:Statement ;
up:attribution _:365240 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:365267 a rdf:Statement ;
up:source unirule:MF_01039 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:365268 a rdf:Statement ;
up:attribution _:365241 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:365269 a rdf:Statement ;
up:source unirule:MF_01039 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:365270 a rdf:Statement ;
up:attribution _:365242 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:365271 a rdf:Statement ;
up:source unirule:MF_01039 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:365272 a rdf:Statement ;
up:attribution _:365243 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:365273 a rdf:Statement ;
up:source unirule:MF_01039 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:365274 a rdf:Statement ;
up:attribution _:365244 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:365275 a rdf:Statement ;
up:source unirule:MF_01039 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:365276 a rdf:Statement ;
up:attribution _:365245 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:365277 a rdf:Statement ;
up:source unirule:MF_01039 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:365278 a rdf:Statement ;
up:attribution _:365246 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01039
#Rule MF_01039 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-01-14
VALUES ?supertaxon82 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01039 .
?thisOrganism rdfs:subClassOf+ ?supertaxon82 .
BIND(URI(CONCAT(STR(?this), '#MF_01039a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01039a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01039a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01039a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01039a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionP6270788 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6270790 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62707MF_0103983 .
?templateMotifSequenceMatchRegionP6270788 faldo:begin ?templateMotifSequenceMatchBeginP6270789 .
?templateMotifSequenceMatchBeginP6270789 faldo:position ?templateMotifSequenceMatchBeginPositionP6270784 ;
faldo:reference isoform:P62707-1 .
?templateMotifSequenceProfileAlignmentOperationP6270790 edam:has_input signature:MF_01039 ;
rdf:type edam:operation_0300 .
?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0103994 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62707MF_0103985 .
?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0103993 .
?targetMotifMatchRegionMatchBeginMF_0103993 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0103986 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0103994 edam:has_input signature:MF_01039 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_0103983, 1, (STRLEN(?templateMotifCigarP62707MF_0103983) - STRLEN(REPLACE(?templateMotifCigarP62707MF_0103983, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionP6270784) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_0103985, 1, (STRLEN(?targetMotifMatchCigarP62707MF_0103985) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_0103985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_0103985, 1, (STRLEN(?targetMotifMatchCigarP62707MF_0103985) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_0103985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0103986) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_0103983, 1, (STRLEN(?templateMotifCigarP62707MF_0103983) - STRLEN(REPLACE(?templateMotifCigarP62707MF_0103983, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP6270784) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_0103985, 1, (STRLEN(?targetMotifMatchCigarP62707MF_0103985) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_0103985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_0103985, 1, (STRLEN(?targetMotifMatchCigarP62707MF_0103985) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_0103985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) .
BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0103986) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse11) .
FILTER (REGEX('RHG[ARNDCQEGHILKMFPSTWYVBZJUOX]S[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)[NK]', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01039a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch104 faldo:location ?templateMotifSequenceMatchRegionP62707105 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62707107 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62707MF_01039100 .
?templateMotifSequenceMatchRegionP62707105 faldo:begin ?templateMotifSequenceMatchBeginP62707106 .
?templateMotifSequenceMatchBeginP62707106 faldo:position ?templateMotifSequenceMatchBeginPositionP62707101 ;
faldo:reference isoform:P62707-1 .
?templateMotifSequenceProfileAlignmentOperationP62707107 edam:has_input signature:MF_01039 ;
rdf:type edam:operation_0300 .
?targetMotifMatch108 faldo:location ?targetMotifMatchRegionMatch109 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01039111 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62707MF_01039102 .
?targetMotifMatchRegionMatch109 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01039110 .
?targetMotifMatchRegionMatchBeginMF_01039110 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01039103 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01039111 edam:has_input signature:MF_01039 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039100, 1, (STRLEN(?templateMotifCigarP62707MF_01039100) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039100, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionP62707101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039102, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039102) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039102, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039102) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) .
BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_01039103) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039100, 1, (STRLEN(?templateMotifCigarP62707MF_01039100) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039100, CONCAT('^(?:-*[^-]){', STR(((24 - ?templateMotifSequenceMatchBeginPositionP62707101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039102, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039102) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039102, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039102) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) .
BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_01039103) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse19) .
FILTER (REGEX('[TS]G', SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01039a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch121 faldo:location ?templateMotifSequenceMatchRegionP62707122 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62707124 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62707MF_01039117 .
?templateMotifSequenceMatchRegionP62707122 faldo:begin ?templateMotifSequenceMatchBeginP62707123 .
?templateMotifSequenceMatchBeginP62707123 faldo:position ?templateMotifSequenceMatchBeginPositionP62707118 ;
faldo:reference isoform:P62707-1 .
?templateMotifSequenceProfileAlignmentOperationP62707124 edam:has_input signature:MF_01039 ;
rdf:type edam:operation_0300 .
?targetMotifMatch125 faldo:location ?targetMotifMatchRegionMatch126 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01039128 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62707MF_01039119 .
?targetMotifMatchRegionMatch126 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01039127 .
?targetMotifMatchRegionMatchBeginMF_01039127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01039120 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01039128 edam:has_input signature:MF_01039 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039117, 1, (STRLEN(?templateMotifCigarP62707MF_01039117) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039117, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionP62707118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039119, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039119) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039119, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039119) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) .
BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_01039120) - 1) AS ?thisPositionOn30) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039117, 1, (STRLEN(?templateMotifCigarP62707MF_01039117) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039117, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionP62707118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039119, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039119) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039119, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039119) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) .
BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_01039120) - 1) AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t133) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse27) .
FILTER (REGEX('E[RK][ARNDCQEGHILKMFPSTWYVBZJUOX]Y', SUBSTR(?thisSequenceValue, ?thisPositionOn30, (?thisPositionOn31 - ?thisPositionOn30)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01039a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch138 faldo:location ?templateMotifSequenceMatchRegionP62707139 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62707141 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62707MF_01039134 .
?templateMotifSequenceMatchRegionP62707139 faldo:begin ?templateMotifSequenceMatchBeginP62707140 .
?templateMotifSequenceMatchBeginP62707140 faldo:position ?templateMotifSequenceMatchBeginPositionP62707135 ;
faldo:reference isoform:P62707-1 .
?templateMotifSequenceProfileAlignmentOperationP62707141 edam:has_input signature:MF_01039 ;
rdf:type edam:operation_0300 .
?targetMotifMatch142 faldo:location ?targetMotifMatchRegionMatch143 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01039145 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62707MF_01039136 .
?targetMotifMatchRegionMatch143 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01039144 .
?targetMotifMatchRegionMatchBeginMF_01039144 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01039137 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01039145 edam:has_input signature:MF_01039 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039134, 1, (STRLEN(?templateMotifCigarP62707MF_01039134) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039134, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionP62707135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039136, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039136) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039136, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039136) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) .
BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_01039137) - 1) AS ?thisPositionOn38) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039134, 1, (STRLEN(?templateMotifCigarP62707MF_01039134) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039134, CONCAT('^(?:-*[^-]){', STR(((117 - ?templateMotifSequenceMatchBeginPositionP62707135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039136, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039136) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039136, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039136) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), '')))), '[^-]', ''))) AS ?step2149) .
BIND(((?step2149 + ?targetMotifMatchRegionMatchBeginPositionMF_01039137) - 1) AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t150) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, (?thisPositionOn39 - ?thisPositionOn38)) = 'RR')) .
BIND(URI(CONCAT(STR(?this), '#MF_01039a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch155 faldo:location ?templateMotifSequenceMatchRegionP62707156 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62707158 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62707MF_01039151 .
?templateMotifSequenceMatchRegionP62707156 faldo:begin ?templateMotifSequenceMatchBeginP62707157 .
?templateMotifSequenceMatchBeginP62707157 faldo:position ?templateMotifSequenceMatchBeginPositionP62707152 ;
faldo:reference isoform:P62707-1 .
?templateMotifSequenceProfileAlignmentOperationP62707158 edam:has_input signature:MF_01039 ;
rdf:type edam:operation_0300 .
?targetMotifMatch159 faldo:location ?targetMotifMatchRegionMatch160 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01039162 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62707MF_01039153 .
?targetMotifMatchRegionMatch160 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01039161 .
?targetMotifMatchRegionMatchBeginMF_01039161 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01039154 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01039162 edam:has_input signature:MF_01039 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039151, 1, (STRLEN(?templateMotifCigarP62707MF_01039151) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039151, CONCAT('^(?:-*[^-]){', STR(((185 - ?templateMotifSequenceMatchBeginPositionP62707152) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039153, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039153) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039153, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039153) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), '')))), '[^-]', ''))) AS ?step2164) .
BIND(((?step2164 + ?targetMotifMatchRegionMatchBeginPositionMF_01039154) - 1) AS ?thisPositionOn46) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039151, 1, (STRLEN(?templateMotifCigarP62707MF_01039151) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039151, CONCAT('^(?:-*[^-]){', STR(((186 - ?templateMotifSequenceMatchBeginPositionP62707152) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039153, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039153) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039153, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039153) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) .
BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_01039154) - 1) AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t167) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, (?thisPositionOn47 - ?thisPositionOn46)) = 'GN')) .
BIND(URI(CONCAT(STR(?this), '#MF_01039a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch172 faldo:location ?templateMotifSequenceMatchRegionP62707173 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62707175 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62707MF_01039168 .
?templateMotifSequenceMatchRegionP62707173 faldo:begin ?templateMotifSequenceMatchBeginP62707174 .
?templateMotifSequenceMatchBeginP62707174 faldo:position ?templateMotifSequenceMatchBeginPositionP62707169 ;
faldo:reference isoform:P62707-1 .
?templateMotifSequenceProfileAlignmentOperationP62707175 edam:has_input signature:MF_01039 ;
rdf:type edam:operation_0300 .
?targetMotifMatch176 faldo:location ?targetMotifMatchRegionMatch177 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01039179 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62707MF_01039170 .
?targetMotifMatchRegionMatch177 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01039178 .
?targetMotifMatchRegionMatchBeginMF_01039178 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01039171 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01039179 edam:has_input signature:MF_01039 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039168, 1, (STRLEN(?templateMotifCigarP62707MF_01039168) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039168, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP62707169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039170, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039170) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039170, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039170) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) .
BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_01039171) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t182) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01039a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch187 faldo:location ?templateMotifSequenceMatchRegionP62707188 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62707190 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62707MF_01039183 .
?templateMotifSequenceMatchRegionP62707188 faldo:begin ?templateMotifSequenceMatchBeginP62707189 .
?templateMotifSequenceMatchBeginP62707189 faldo:position ?templateMotifSequenceMatchBeginPositionP62707184 ;
faldo:reference isoform:P62707-1 .
?templateMotifSequenceProfileAlignmentOperationP62707190 edam:has_input signature:MF_01039 ;
rdf:type edam:operation_0300 .
?targetMotifMatch191 faldo:location ?targetMotifMatchRegionMatch192 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01039194 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62707MF_01039185 .
?targetMotifMatchRegionMatch192 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01039193 .
?targetMotifMatchRegionMatchBeginMF_01039193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01039186 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01039194 edam:has_input signature:MF_01039 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039183, 1, (STRLEN(?templateMotifCigarP62707MF_01039183) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039183, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionP62707184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039185, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039185) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039185, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039185) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) .
BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_01039186) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t197) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01039a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch202 faldo:location ?templateMotifSequenceMatchRegionP62707203 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62707205 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62707MF_01039198 .
?templateMotifSequenceMatchRegionP62707203 faldo:begin ?templateMotifSequenceMatchBeginP62707204 .
?templateMotifSequenceMatchBeginP62707204 faldo:position ?templateMotifSequenceMatchBeginPositionP62707199 ;
faldo:reference isoform:P62707-1 .
?templateMotifSequenceProfileAlignmentOperationP62707205 edam:has_input signature:MF_01039 ;
rdf:type edam:operation_0300 .
?targetMotifMatch206 faldo:location ?targetMotifMatchRegionMatch207 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01039209 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62707MF_01039200 .
?targetMotifMatchRegionMatch207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01039208 .
?targetMotifMatchRegionMatchBeginMF_01039208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01039201 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01039209 edam:has_input signature:MF_01039 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039198, 1, (STRLEN(?templateMotifCigarP62707MF_01039198) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039198, CONCAT('^(?:-*[^-]){', STR(((62 - ?templateMotifSequenceMatchBeginPositionP62707199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039200, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039200) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039200, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039200) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) .
BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_01039201) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs1t212) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse63) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01039a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch217 faldo:location ?templateMotifSequenceMatchRegionP62707218 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62707220 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62707MF_01039213 .
?templateMotifSequenceMatchRegionP62707218 faldo:begin ?templateMotifSequenceMatchBeginP62707219 .
?templateMotifSequenceMatchBeginP62707219 faldo:position ?templateMotifSequenceMatchBeginPositionP62707214 ;
faldo:reference isoform:P62707-1 .
?templateMotifSequenceProfileAlignmentOperationP62707220 edam:has_input signature:MF_01039 ;
rdf:type edam:operation_0300 .
?targetMotifMatch221 faldo:location ?targetMotifMatchRegionMatch222 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01039224 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62707MF_01039215 .
?targetMotifMatchRegionMatch222 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01039223 .
?targetMotifMatchRegionMatchBeginMF_01039223 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01039216 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01039224 edam:has_input signature:MF_01039 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039213, 1, (STRLEN(?templateMotifCigarP62707MF_01039213) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039213, CONCAT('^(?:-*[^-]){', STR(((100 - ?templateMotifSequenceMatchBeginPositionP62707214) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1225) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039215, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039215) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039215, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039215) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), '')))), '[^-]', ''))) AS ?step2226) .
BIND(((?step2226 + ?targetMotifMatchRegionMatchBeginPositionMF_01039216) - 1) AS ?thisPositionOn74) .
BIND(?thisPositionOn74 AS ?thisPositionOn75) .
BIND(?this AS ?pfs1t227) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01039a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch232 faldo:location ?templateMotifSequenceMatchRegionP62707233 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62707235 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP62707MF_01039228 .
?templateMotifSequenceMatchRegionP62707233 faldo:begin ?templateMotifSequenceMatchBeginP62707234 .
?templateMotifSequenceMatchBeginP62707234 faldo:position ?templateMotifSequenceMatchBeginPositionP62707229 ;
faldo:reference isoform:P62707-1 .
?templateMotifSequenceProfileAlignmentOperationP62707235 edam:has_input signature:MF_01039 ;
rdf:type edam:operation_0300 .
?targetMotifMatch236 faldo:location ?targetMotifMatchRegionMatch237 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01039239 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP62707MF_01039230 .
?targetMotifMatchRegionMatch237 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01039238 .
?targetMotifMatchRegionMatchBeginMF_01039238 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01039231 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01039239 edam:has_input signature:MF_01039 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039228, 1, (STRLEN(?templateMotifCigarP62707MF_01039228) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039228, CONCAT('^(?:-*[^-]){', STR(((184 - ?templateMotifSequenceMatchBeginPositionP62707229) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1240) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039230, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039230) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039230, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039230) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), '')))), '[^-]', ''))) AS ?step2241) .
BIND(((?step2241 + ?targetMotifMatchRegionMatchBeginPositionMF_01039231) - 1) AS ?thisPositionOn80) .
BIND(?thisPositionOn80 AS ?thisPositionOn81) .
BIND(?this AS ?pfs1t242) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse79) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01039a77')) AS ?annotation77) .
BIND(?this AS ?pfs76) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(?this AS ?case7) .
}
}
"xsd:string |
