| http://purl.uniprot.org/unirules/MF_01107#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:385027 up:source unirule:MF_01107 .
_:385028 up:source unirule:MF_01107 .
_:385029 up:source unirule:MF_01107 .
_:385030 up:source unirule:MF_01107 .
_:385031 up:source unirule:MF_01107 .
_:385032 up:source unirule:MF_01107 .
_:385033 up:source unirule:MF_01107 .
_:385034 up:source unirule:MF_01107 .
_:385035 up:source unirule:MF_01107 .
_:385036 up:source unirule:MF_01107 .
_:385037 up:source unirule:MF_01107 .
_:385038 up:source unirule:MF_01107 .
_:385039 up:source unirule:MF_01107 .
_:385040 up:source unirule:MF_01107 .
_:385041 up:source unirule:MF_01107 .
_:385042 up:source unirule:MF_01107 .
_:385043 up:source unirule:MF_01107 .
_:385044 up:source unirule:MF_01107 .
_:385045 up:source unirule:MF_01107 .
_:385046 up:source unirule:MF_01107 .
_:385047 up:source unirule:MF_01107 .
_:385048 up:source unirule:MF_01107 .
_:385049 up:source unirule:MF_01107 .
_:385050 up:source unirule:MF_01107 .
_:385051 up:source unirule:MF_01107 .
_:385052 up:source unirule:MF_01107 .
_:385053 up:source unirule:MF_01107 .
?this up:annotation ?annotation0 ,
?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0003992 ,
GO:0005737 ,
GO:0006526 ,
keyword:28 ,
keyword:32 ,
keyword:55 ,
keyword:663 ,
keyword:808 ,
keyword:963 .
?annotation0 up:activity ?activity1 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity1 up:catalyticActivity ;
up:enzymeClass .
?annotation2 up:cofactor chebi:597326 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 pyridoxal phosphate per subunit.' .
?annotation3 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 4/4.' .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.' .
?case8 up:classifiedWith GO:0009016 ,
GO:0009089 ,
keyword:457 ;
up:recommendedName ?name9 .
?name9 up:ecName '2.6.1.11' ,
'2.6.1.17' ;
up:fullName 'Acetylornithine/succinyldiaminopimelate aminotransferase' ;
up:shortName 'ACOAT' ,
'DapATase' ,
'Succinyldiaminopimelate transferase' ;
rdf:type up:Structured_Name .
?case10 up:recommendedName ?name11 .
?name11 up:ecName '2.6.1.11' ;
up:fullName 'Acetylornithine aminotransferase' ;
up:shortName 'ACOAT' ;
rdf:type up:Structured_Name .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:597326 .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:597326 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:597326 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:57805 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf chebi:57805 .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:597326 .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-(pyridoxal phosphate)lysine' .
?pfsb56 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
_:385054 a rdf:Statement ;
up:attribution _:385027 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:385055 a rdf:Statement ;
up:attribution _:385028 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:385056 a rdf:Statement ;
up:attribution _:385029 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:385057 a rdf:Statement ;
up:attribution _:385030 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:385058 a rdf:Statement ;
up:attribution _:385031 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:385059 a rdf:Statement ;
up:attribution _:385032 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:385060 a rdf:Statement ;
up:attribution _:385033 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:385061 a rdf:Statement ;
up:attribution _:385034 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:385062 a rdf:Statement ;
up:attribution _:385035 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:55 .
_:385063 a rdf:Statement ;
up:attribution _:385036 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:385064 a rdf:Statement ;
up:attribution _:385037 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:32 .
_:385065 a rdf:Statement ;
up:attribution _:385038 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:663 .
_:385066 a rdf:Statement ;
up:attribution _:385039 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003992 .
_:385067 a rdf:Statement ;
up:attribution _:385040 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006526 .
_:385068 a rdf:Statement ;
up:attribution _:385041 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:385069 a rdf:Statement ;
up:attribution _:385042 ;
rdf:subject ?case8 ;
rdf:predicate up:recommendedName ;
rdf:object ?name9 .
_:385070 a rdf:Statement ;
up:attribution _:385043 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:457 .
_:385071 a rdf:Statement ;
up:attribution _:385044 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009016 .
_:385072 a rdf:Statement ;
up:attribution _:385045 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009089 .
_:385073 a rdf:Statement ;
up:attribution _:385046 ;
rdf:subject ?case10 ;
rdf:predicate up:recommendedName ;
rdf:object ?name11 .
_:385074 a rdf:Statement ;
up:source unirule:MF_01107 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:385075 a rdf:Statement ;
up:attribution _:385047 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:385076 a rdf:Statement ;
up:source unirule:MF_01107 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:385077 a rdf:Statement ;
up:attribution _:385048 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:385078 a rdf:Statement ;
up:source unirule:MF_01107 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:385079 a rdf:Statement ;
up:attribution _:385049 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:385080 a rdf:Statement ;
up:source unirule:MF_01107 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:385081 a rdf:Statement ;
up:attribution _:385050 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:385082 a rdf:Statement ;
up:source unirule:MF_01107 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:385083 a rdf:Statement ;
up:attribution _:385051 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:385084 a rdf:Statement ;
up:source unirule:MF_01107 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:385085 a rdf:Statement ;
up:attribution _:385052 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:385086 a rdf:Statement ;
up:source unirule:MF_01107 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:385087 a rdf:Statement ;
up:attribution _:385053 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01107
#Rule MF_01107 Created by:? on:2005-02-28 Modified by:Elisabeth Coudert on:2025-01-09
VALUES ?supertaxon60 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01107 .
?thisOrganism rdfs:subClassOf+ ?supertaxon60 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_01173 .
})) .
BIND(URI(CONCAT(STR(?this), '#MF_01107a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_01107a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01107a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01107a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01107a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01107a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch65 faldo:location ?templateMotifSequenceMatchRegionP1833566 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1833568 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP18335MF_0110761 .
?templateMotifSequenceMatchRegionP1833566 faldo:begin ?templateMotifSequenceMatchBeginP1833567 .
?templateMotifSequenceMatchBeginP1833567 faldo:position ?templateMotifSequenceMatchBeginPositionP1833562 ;
faldo:reference isoform:P18335-1 .
?templateMotifSequenceProfileAlignmentOperationP1833568 edam:has_input signature:MF_01107 ;
rdf:type edam:operation_0300 .
?targetMotifMatch69 faldo:location ?targetMotifMatchRegionMatch70 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0110772 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP18335MF_0110763 .
?targetMotifMatchRegionMatch70 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0110771 .
?targetMotifMatchRegionMatchBeginMF_0110771 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0110764 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0110772 edam:has_input signature:MF_01107 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP18335MF_0110761, 1, (STRLEN(?templateMotifCigarP18335MF_0110761) - STRLEN(REPLACE(?templateMotifCigarP18335MF_0110761, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionP1833562) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP18335MF_0110763, 1, (STRLEN(?targetMotifMatchCigarP18335MF_0110763) - STRLEN(REPLACE(?targetMotifMatchCigarP18335MF_0110763, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP18335MF_0110763, 1, (STRLEN(?targetMotifMatchCigarP18335MF_0110763) - STRLEN(REPLACE(?targetMotifMatchCigarP18335MF_0110763, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0110764) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP18335MF_0110761, 1, (STRLEN(?templateMotifCigarP18335MF_0110761) - STRLEN(REPLACE(?templateMotifCigarP18335MF_0110761, CONCAT('^(?:-*[^-]){', STR(((109 - ?templateMotifSequenceMatchBeginPositionP1833562) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP18335MF_0110763, 1, (STRLEN(?targetMotifMatchCigarP18335MF_0110763) - STRLEN(REPLACE(?targetMotifMatchCigarP18335MF_0110763, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP18335MF_0110763, 1, (STRLEN(?targetMotifMatchCigarP18335MF_0110763) - STRLEN(REPLACE(?targetMotifMatchCigarP18335MF_0110763, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) .
BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0110764) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER (REGEX('G[TA]', SUBSTR(?thisSequenceValue, ?thisPositionOn17, (?thisPositionOn18 - ?thisPositionOn17)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01107a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch82 faldo:location ?templateMotifSequenceMatchRegionP1833583 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1833585 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP18335MF_0110778 .
?templateMotifSequenceMatchRegionP1833583 faldo:begin ?templateMotifSequenceMatchBeginP1833584 .
?templateMotifSequenceMatchBeginP1833584 faldo:position ?templateMotifSequenceMatchBeginPositionP1833579 ;
faldo:reference isoform:P18335-1 .
?templateMotifSequenceProfileAlignmentOperationP1833585 edam:has_input signature:MF_01107 ;
rdf:type edam:operation_0300 .
?targetMotifMatch86 faldo:location ?targetMotifMatchRegionMatch87 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0110789 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP18335MF_0110780 .
?targetMotifMatchRegionMatch87 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0110788 .
?targetMotifMatchRegionMatchBeginMF_0110788 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0110781 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0110789 edam:has_input signature:MF_01107 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP18335MF_0110778, 1, (STRLEN(?templateMotifCigarP18335MF_0110778) - STRLEN(REPLACE(?templateMotifCigarP18335MF_0110778, CONCAT('^(?:-*[^-]){', STR(((226 - ?templateMotifSequenceMatchBeginPositionP1833579) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP18335MF_0110780, 1, (STRLEN(?targetMotifMatchCigarP18335MF_0110780) - STRLEN(REPLACE(?targetMotifMatchCigarP18335MF_0110780, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP18335MF_0110780, 1, (STRLEN(?targetMotifMatchCigarP18335MF_0110780) - STRLEN(REPLACE(?targetMotifMatchCigarP18335MF_0110780, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) .
BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0110781) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP18335MF_0110778, 1, (STRLEN(?templateMotifCigarP18335MF_0110778) - STRLEN(REPLACE(?templateMotifCigarP18335MF_0110778, CONCAT('^(?:-*[^-]){', STR(((229 - ?templateMotifSequenceMatchBeginPositionP1833579) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP18335MF_0110780, 1, (STRLEN(?targetMotifMatchCigarP18335MF_0110780) - STRLEN(REPLACE(?targetMotifMatchCigarP18335MF_0110780, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP18335MF_0110780, 1, (STRLEN(?targetMotifMatchCigarP18335MF_0110780) - STRLEN(REPLACE(?targetMotifMatchCigarP18335MF_0110780, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) .
BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0110781) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER (REGEX('DE[IV]Q', SUBSTR(?thisSequenceValue, ?thisPositionOn24, (?thisPositionOn25 - ?thisPositionOn24)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01107a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch99 faldo:location ?templateMotifSequenceMatchRegionP18335100 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP18335102 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP18335MF_0110795 .
?templateMotifSequenceMatchRegionP18335100 faldo:begin ?templateMotifSequenceMatchBeginP18335101 .
?templateMotifSequenceMatchBeginP18335101 faldo:position ?templateMotifSequenceMatchBeginPositionP1833596 ;
faldo:reference isoform:P18335-1 .
?templateMotifSequenceProfileAlignmentOperationP18335102 edam:has_input signature:MF_01107 ;
rdf:type edam:operation_0300 .
?targetMotifMatch103 faldo:location ?targetMotifMatchRegionMatch104 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01107106 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP18335MF_0110797 .
?targetMotifMatchRegionMatch104 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01107105 .
?targetMotifMatchRegionMatchBeginMF_01107105 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0110798 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01107106 edam:has_input signature:MF_01107 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP18335MF_0110795, 1, (STRLEN(?templateMotifCigarP18335MF_0110795) - STRLEN(REPLACE(?templateMotifCigarP18335MF_0110795, CONCAT('^(?:-*[^-]){', STR(((141 - ?templateMotifSequenceMatchBeginPositionP1833596) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP18335MF_0110797, 1, (STRLEN(?targetMotifMatchCigarP18335MF_0110797) - STRLEN(REPLACE(?targetMotifMatchCigarP18335MF_0110797, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP18335MF_0110797, 1, (STRLEN(?targetMotifMatchCigarP18335MF_0110797) - STRLEN(REPLACE(?targetMotifMatchCigarP18335MF_0110797, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0110798) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'F')) .
BIND(URI(CONCAT(STR(?this), '#MF_01107a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch114 faldo:location ?templateMotifSequenceMatchRegionP18335115 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP18335117 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP18335MF_01107110 .
?templateMotifSequenceMatchRegionP18335115 faldo:begin ?templateMotifSequenceMatchBeginP18335116 .
?templateMotifSequenceMatchBeginP18335116 faldo:position ?templateMotifSequenceMatchBeginPositionP18335111 ;
faldo:reference isoform:P18335-1 .
?templateMotifSequenceProfileAlignmentOperationP18335117 edam:has_input signature:MF_01107 ;
rdf:type edam:operation_0300 .
?targetMotifMatch118 faldo:location ?targetMotifMatchRegionMatch119 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01107121 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP18335MF_01107112 .
?targetMotifMatchRegionMatch119 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01107120 .
?targetMotifMatchRegionMatchBeginMF_01107120 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01107113 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01107121 edam:has_input signature:MF_01107 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP18335MF_01107110, 1, (STRLEN(?templateMotifCigarP18335MF_01107110) - STRLEN(REPLACE(?templateMotifCigarP18335MF_01107110, CONCAT('^(?:-*[^-]){', STR(((144 - ?templateMotifSequenceMatchBeginPositionP18335111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP18335MF_01107112, 1, (STRLEN(?targetMotifMatchCigarP18335MF_01107112) - STRLEN(REPLACE(?targetMotifMatchCigarP18335MF_01107112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP18335MF_01107112, 1, (STRLEN(?targetMotifMatchCigarP18335MF_01107112) - STRLEN(REPLACE(?targetMotifMatchCigarP18335MF_01107112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) .
BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_01107113) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t124) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01107a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch129 faldo:location ?templateMotifSequenceMatchRegionP18335130 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP18335132 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP18335MF_01107125 .
?templateMotifSequenceMatchRegionP18335130 faldo:begin ?templateMotifSequenceMatchBeginP18335131 .
?templateMotifSequenceMatchBeginP18335131 faldo:position ?templateMotifSequenceMatchBeginPositionP18335126 ;
faldo:reference isoform:P18335-1 .
?templateMotifSequenceProfileAlignmentOperationP18335132 edam:has_input signature:MF_01107 ;
rdf:type edam:operation_0300 .
?targetMotifMatch133 faldo:location ?targetMotifMatchRegionMatch134 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01107136 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP18335MF_01107127 .
?targetMotifMatchRegionMatch134 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01107135 .
?targetMotifMatchRegionMatchBeginMF_01107135 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01107128 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01107136 edam:has_input signature:MF_01107 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP18335MF_01107125, 1, (STRLEN(?templateMotifCigarP18335MF_01107125) - STRLEN(REPLACE(?templateMotifCigarP18335MF_01107125, CONCAT('^(?:-*[^-]){', STR(((283 - ?templateMotifSequenceMatchBeginPositionP18335126) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP18335MF_01107127, 1, (STRLEN(?targetMotifMatchCigarP18335MF_01107127) - STRLEN(REPLACE(?targetMotifMatchCigarP18335MF_01107127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP18335MF_01107127, 1, (STRLEN(?targetMotifMatchCigarP18335MF_01107127) - STRLEN(REPLACE(?targetMotifMatchCigarP18335MF_01107127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), '')))), '[^-]', ''))) AS ?step2138) .
BIND(((?step2138 + ?targetMotifMatchRegionMatchBeginPositionMF_01107128) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t139) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01107a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch144 faldo:location ?templateMotifSequenceMatchRegionP18335145 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP18335147 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP18335MF_01107140 .
?templateMotifSequenceMatchRegionP18335145 faldo:begin ?templateMotifSequenceMatchBeginP18335146 .
?templateMotifSequenceMatchBeginP18335146 faldo:position ?templateMotifSequenceMatchBeginPositionP18335141 ;
faldo:reference isoform:P18335-1 .
?templateMotifSequenceProfileAlignmentOperationP18335147 edam:has_input signature:MF_01107 ;
rdf:type edam:operation_0300 .
?targetMotifMatch148 faldo:location ?targetMotifMatchRegionMatch149 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01107151 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP18335MF_01107142 .
?targetMotifMatchRegionMatch149 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01107150 .
?targetMotifMatchRegionMatchBeginMF_01107150 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01107143 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01107151 edam:has_input signature:MF_01107 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP18335MF_01107140, 1, (STRLEN(?templateMotifCigarP18335MF_01107140) - STRLEN(REPLACE(?templateMotifCigarP18335MF_01107140, CONCAT('^(?:-*[^-]){', STR(((284 - ?templateMotifSequenceMatchBeginPositionP18335141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP18335MF_01107142, 1, (STRLEN(?targetMotifMatchCigarP18335MF_01107142) - STRLEN(REPLACE(?targetMotifMatchCigarP18335MF_01107142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP18335MF_01107142, 1, (STRLEN(?targetMotifMatchCigarP18335MF_01107142) - STRLEN(REPLACE(?targetMotifMatchCigarP18335MF_01107142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), '')))), '[^-]', ''))) AS ?step2153) .
BIND(((?step2153 + ?targetMotifMatchRegionMatchBeginPositionMF_01107143) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t154) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01107a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch159 faldo:location ?templateMotifSequenceMatchRegionP18335160 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP18335162 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP18335MF_01107155 .
?templateMotifSequenceMatchRegionP18335160 faldo:begin ?templateMotifSequenceMatchBeginP18335161 .
?templateMotifSequenceMatchBeginP18335161 faldo:position ?templateMotifSequenceMatchBeginPositionP18335156 ;
faldo:reference isoform:P18335-1 .
?templateMotifSequenceProfileAlignmentOperationP18335162 edam:has_input signature:MF_01107 ;
rdf:type edam:operation_0300 .
?targetMotifMatch163 faldo:location ?targetMotifMatchRegionMatch164 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01107166 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP18335MF_01107157 .
?targetMotifMatchRegionMatch164 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01107165 .
?targetMotifMatchRegionMatchBeginMF_01107165 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01107158 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01107166 edam:has_input signature:MF_01107 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP18335MF_01107155, 1, (STRLEN(?templateMotifCigarP18335MF_01107155) - STRLEN(REPLACE(?templateMotifCigarP18335MF_01107155, CONCAT('^(?:-*[^-]){', STR(((255 - ?templateMotifSequenceMatchBeginPositionP18335156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP18335MF_01107157, 1, (STRLEN(?targetMotifMatchCigarP18335MF_01107157) - STRLEN(REPLACE(?targetMotifMatchCigarP18335MF_01107157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP18335MF_01107157, 1, (STRLEN(?targetMotifMatchCigarP18335MF_01107157) - STRLEN(REPLACE(?targetMotifMatchCigarP18335MF_01107157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) .
BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_01107158) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t169) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01107a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(?this AS ?case8) .
BIND(URI(CONCAT(STR(?this), '#MF_01107a9')) AS ?name9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:91347 .
})) .
BIND(?this AS ?case10) .
BIND(URI(CONCAT(STR(?this), '#MF_01107a11')) AS ?name11) .
}
}
"xsd:string |
