| http://purl.uniprot.org/unirules/MF_01108#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:385621 up:source unirule:MF_01108 .
_:385622 up:source unirule:MF_01108 .
_:385623 up:source unirule:MF_01108 .
_:385624 up:source unirule:MF_01108 .
_:385625 up:source unirule:MF_01108 .
_:385626 up:source unirule:MF_01108 .
_:385627 up:source unirule:MF_01108 .
_:385628 up:source unirule:MF_01108 .
_:385629 up:source unirule:MF_01108 .
_:385630 up:source unirule:MF_01108 .
_:385631 up:source unirule:MF_01108 .
_:385632 up:source unirule:MF_01108 .
_:385633 up:source unirule:MF_01108 .
_:385634 up:source unirule:MF_01108 .
_:385635 up:source unirule:MF_01108 .
_:385636 up:source unirule:MF_01108 .
_:385637 up:source unirule:MF_01108 .
_:385638 up:source unirule:MF_01108 .
_:385639 up:source unirule:MF_01108 .
_:385640 up:source unirule:MF_01108 .
_:385641 up:source unirule:MF_01108 .
_:385642 up:source unirule:MF_01108 .
_:385643 up:source unirule:MF_01108 .
_:385644 up:source unirule:MF_01108 .
_:385645 up:source unirule:MF_01108 .
_:385646 up:source unirule:MF_01108 .
_:385647 up:source unirule:MF_01108 .
_:385648 up:source unirule:MF_01108 .
_:385649 up:source unirule:MF_01108 .
_:385650 up:source unirule:MF_01108 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation12 ;
up:classifiedWith GO:0005737 ,
GO:0006526 ,
GO:0008270 ,
GO:0008777 ,
keyword:170 ,
keyword:28 ,
keyword:378 ,
keyword:479 ,
keyword:55 ,
keyword:862 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.5.1.16' ;
up:fullName 'Acetylornithine deacetylase' ;
up:shortName 'AO' ,
'Acetylornithinase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'N-acetylornithinase' ;
up:shortName 'NAO' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'argE' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the hydrolysis of the amide bond of N(2)-acetylated L-amino acids. Cleaves the acetyl group from N-acetyl-L-ornithine to form L-ornithine, an intermediate in L-arginine biosynthesis pathway, and a branchpoint in the synthesis of polyamines.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:29105 ,
chebi:48828 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 Zn(2+) or Co(2+) ions per subunit.' .
?annotation7 up:cofactor chebi:57925 ;
rdf:type up:Cofactor_Annotation .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-arginine biosynthesis; L-ornithine from N(2)-acetyl-L-ornithine (linear): step 1/1.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation10 a up:Subcellular_Location_Annotation .
?annotation10li11 up:cellularComponent .
?annotation12 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the peptidase M20A family. ArgE subfamily.' .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Active_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Active_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:29105 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:29105 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:29105 .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf chebi:29105 .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf chebi:29105 .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
up:ligand ?ligand64 ;
rdf:type up:Binding_Site_Annotation .
?pfsb62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?ligand64 rdfs:subClassOf chebi:29105 .
_:385651 a rdf:Statement ;
up:attribution _:385621 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:385652 a rdf:Statement ;
up:attribution _:385622 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:385653 a rdf:Statement ;
up:attribution _:385623 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:385654 a rdf:Statement ;
up:attribution _:385624 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:385655 a rdf:Statement ;
up:attribution _:385625 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:385656 a rdf:Statement ;
up:attribution _:385626 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:385657 a rdf:Statement ;
up:attribution _:385627 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:385658 a rdf:Statement ;
up:attribution _:385628 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:385659 a rdf:Statement ;
up:attribution _:385629 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:385660 a rdf:Statement ;
up:attribution _:385630 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:385661 a rdf:Statement ;
up:attribution _:385631 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:385662 a rdf:Statement ;
up:attribution _:385632 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:385663 a rdf:Statement ;
up:attribution _:385633 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:385664 a rdf:Statement ;
up:attribution _:385634 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:55 .
_:385665 a rdf:Statement ;
up:attribution _:385635 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:385666 a rdf:Statement ;
up:attribution _:385636 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:385667 a rdf:Statement ;
up:attribution _:385637 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:170 .
_:385668 a rdf:Statement ;
up:attribution _:385638 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:385669 a rdf:Statement ;
up:attribution _:385639 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008777 .
_:385670 a rdf:Statement ;
up:attribution _:385640 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:385671 a rdf:Statement ;
up:attribution _:385641 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006526 .
_:385672 a rdf:Statement ;
up:attribution _:385642 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:385673 a rdf:Statement ;
up:source unirule:MF_01108 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:385674 a rdf:Statement ;
up:attribution _:385643 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:385675 a rdf:Statement ;
up:source unirule:MF_01108 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:385676 a rdf:Statement ;
up:attribution _:385644 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:385677 a rdf:Statement ;
up:source unirule:MF_01108 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:385678 a rdf:Statement ;
up:attribution _:385645 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:385679 a rdf:Statement ;
up:source unirule:MF_01108 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:385680 a rdf:Statement ;
up:attribution _:385646 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:385681 a rdf:Statement ;
up:source unirule:MF_01108 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:385682 a rdf:Statement ;
up:attribution _:385647 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:385683 a rdf:Statement ;
up:source unirule:MF_01108 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:385684 a rdf:Statement ;
up:attribution _:385648 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:385685 a rdf:Statement ;
up:source unirule:MF_01108 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:385686 a rdf:Statement ;
up:attribution _:385649 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:385687 a rdf:Statement ;
up:source unirule:MF_01108 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:385688 a rdf:Statement ;
up:attribution _:385650 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01108
#Rule MF_01108 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-11-05
VALUES ?supertaxon67 {taxon:91347 taxon:135623}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01108 .
?thisOrganism rdfs:subClassOf+ ?supertaxon67 .
BIND(URI(CONCAT(STR(?this), '#MF_01108a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01108a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01108a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01108a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01108a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01108a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01108a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01108a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01108a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01108a12')) AS ?annotation12) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch72 faldo:location ?templateMotifSequenceMatchRegionP2390873 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2390875 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP23908MF_0110868 .
?templateMotifSequenceMatchRegionP2390873 faldo:begin ?templateMotifSequenceMatchBeginP2390874 .
?templateMotifSequenceMatchBeginP2390874 faldo:position ?templateMotifSequenceMatchBeginPositionP2390869 ;
faldo:reference isoform:P23908-1 .
?templateMotifSequenceProfileAlignmentOperationP2390875 edam:has_input signature:MF_01108 ;
rdf:type edam:operation_0300 .
?targetMotifMatch76 faldo:location ?targetMotifMatchRegionMatch77 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0110879 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP23908MF_0110870 .
?targetMotifMatchRegionMatch77 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0110878 .
?targetMotifMatchRegionMatchBeginMF_0110878 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0110871 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0110879 edam:has_input signature:MF_01108 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23908MF_0110868, 1, (STRLEN(?templateMotifCigarP23908MF_0110868) - STRLEN(REPLACE(?templateMotifCigarP23908MF_0110868, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionP2390869) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23908MF_0110870, 1, (STRLEN(?targetMotifMatchCigarP23908MF_0110870) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_0110870, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23908MF_0110870, 1, (STRLEN(?targetMotifMatchCigarP23908MF_0110870) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_0110870, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0110871) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01108a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionP2390888 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2390890 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP23908MF_0110883 .
?templateMotifSequenceMatchRegionP2390888 faldo:begin ?templateMotifSequenceMatchBeginP2390889 .
?templateMotifSequenceMatchBeginP2390889 faldo:position ?templateMotifSequenceMatchBeginPositionP2390884 ;
faldo:reference isoform:P23908-1 .
?templateMotifSequenceProfileAlignmentOperationP2390890 edam:has_input signature:MF_01108 ;
rdf:type edam:operation_0300 .
?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0110894 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP23908MF_0110885 .
?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0110893 .
?targetMotifMatchRegionMatchBeginMF_0110893 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0110886 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0110894 edam:has_input signature:MF_01108 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23908MF_0110883, 1, (STRLEN(?templateMotifCigarP23908MF_0110883) - STRLEN(REPLACE(?templateMotifCigarP23908MF_0110883, CONCAT('^(?:-*[^-]){', STR(((144 - ?templateMotifSequenceMatchBeginPositionP2390884) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23908MF_0110885, 1, (STRLEN(?targetMotifMatchCigarP23908MF_0110885) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_0110885, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23908MF_0110885, 1, (STRLEN(?targetMotifMatchCigarP23908MF_0110885) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_0110885, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0110886) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01108a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionP23908103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23908105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP23908MF_0110898 .
?templateMotifSequenceMatchRegionP23908103 faldo:begin ?templateMotifSequenceMatchBeginP23908104 .
?templateMotifSequenceMatchBeginP23908104 faldo:position ?templateMotifSequenceMatchBeginPositionP2390899 ;
faldo:reference isoform:P23908-1 .
?templateMotifSequenceProfileAlignmentOperationP23908105 edam:has_input signature:MF_01108 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01108109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP23908MF_01108100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01108108 .
?targetMotifMatchRegionMatchBeginMF_01108108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01108101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01108109 edam:has_input signature:MF_01108 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23908MF_0110898, 1, (STRLEN(?templateMotifCigarP23908MF_0110898) - STRLEN(REPLACE(?templateMotifCigarP23908MF_0110898, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionP2390899) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23908MF_01108100, 1, (STRLEN(?targetMotifMatchCigarP23908MF_01108100) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_01108100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23908MF_01108100, 1, (STRLEN(?targetMotifMatchCigarP23908MF_01108100) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_01108100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_01108101) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01108a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionP23908118 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23908120 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP23908MF_01108113 .
?templateMotifSequenceMatchRegionP23908118 faldo:begin ?templateMotifSequenceMatchBeginP23908119 .
?templateMotifSequenceMatchBeginP23908119 faldo:position ?templateMotifSequenceMatchBeginPositionP23908114 ;
faldo:reference isoform:P23908-1 .
?templateMotifSequenceProfileAlignmentOperationP23908120 edam:has_input signature:MF_01108 ;
rdf:type edam:operation_0300 .
?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01108124 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP23908MF_01108115 .
?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01108123 .
?targetMotifMatchRegionMatchBeginMF_01108123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01108116 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01108124 edam:has_input signature:MF_01108 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23908MF_01108113, 1, (STRLEN(?templateMotifCigarP23908MF_01108113) - STRLEN(REPLACE(?templateMotifCigarP23908MF_01108113, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionP23908114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23908MF_01108115, 1, (STRLEN(?targetMotifMatchCigarP23908MF_01108115) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_01108115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23908MF_01108115, 1, (STRLEN(?targetMotifMatchCigarP23908MF_01108115) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_01108115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_01108116) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01108a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionP23908133 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23908135 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP23908MF_01108128 .
?templateMotifSequenceMatchRegionP23908133 faldo:begin ?templateMotifSequenceMatchBeginP23908134 .
?templateMotifSequenceMatchBeginP23908134 faldo:position ?templateMotifSequenceMatchBeginPositionP23908129 ;
faldo:reference isoform:P23908-1 .
?templateMotifSequenceProfileAlignmentOperationP23908135 edam:has_input signature:MF_01108 ;
rdf:type edam:operation_0300 .
?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01108139 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP23908MF_01108130 .
?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01108138 .
?targetMotifMatchRegionMatchBeginMF_01108138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01108131 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01108139 edam:has_input signature:MF_01108 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23908MF_01108128, 1, (STRLEN(?templateMotifCigarP23908MF_01108128) - STRLEN(REPLACE(?templateMotifCigarP23908MF_01108128, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionP23908129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23908MF_01108130, 1, (STRLEN(?targetMotifMatchCigarP23908MF_01108130) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_01108130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23908MF_01108130, 1, (STRLEN(?targetMotifMatchCigarP23908MF_01108130) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_01108130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_01108131) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01108a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch147 faldo:location ?templateMotifSequenceMatchRegionP23908148 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23908150 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP23908MF_01108143 .
?templateMotifSequenceMatchRegionP23908148 faldo:begin ?templateMotifSequenceMatchBeginP23908149 .
?templateMotifSequenceMatchBeginP23908149 faldo:position ?templateMotifSequenceMatchBeginPositionP23908144 ;
faldo:reference isoform:P23908-1 .
?templateMotifSequenceProfileAlignmentOperationP23908150 edam:has_input signature:MF_01108 ;
rdf:type edam:operation_0300 .
?targetMotifMatch151 faldo:location ?targetMotifMatchRegionMatch152 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01108154 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP23908MF_01108145 .
?targetMotifMatchRegionMatch152 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01108153 .
?targetMotifMatchRegionMatchBeginMF_01108153 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01108146 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01108154 edam:has_input signature:MF_01108 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23908MF_01108143, 1, (STRLEN(?templateMotifCigarP23908MF_01108143) - STRLEN(REPLACE(?templateMotifCigarP23908MF_01108143, CONCAT('^(?:-*[^-]){', STR(((145 - ?templateMotifSequenceMatchBeginPositionP23908144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23908MF_01108145, 1, (STRLEN(?targetMotifMatchCigarP23908MF_01108145) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_01108145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23908MF_01108145, 1, (STRLEN(?targetMotifMatchCigarP23908MF_01108145) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_01108145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) .
BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_01108146) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t157) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01108a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch162 faldo:location ?templateMotifSequenceMatchRegionP23908163 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23908165 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP23908MF_01108158 .
?templateMotifSequenceMatchRegionP23908163 faldo:begin ?templateMotifSequenceMatchBeginP23908164 .
?templateMotifSequenceMatchBeginP23908164 faldo:position ?templateMotifSequenceMatchBeginPositionP23908159 ;
faldo:reference isoform:P23908-1 .
?templateMotifSequenceProfileAlignmentOperationP23908165 edam:has_input signature:MF_01108 ;
rdf:type edam:operation_0300 .
?targetMotifMatch166 faldo:location ?targetMotifMatchRegionMatch167 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01108169 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP23908MF_01108160 .
?targetMotifMatchRegionMatch167 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01108168 .
?targetMotifMatchRegionMatchBeginMF_01108168 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01108161 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01108169 edam:has_input signature:MF_01108 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23908MF_01108158, 1, (STRLEN(?templateMotifCigarP23908MF_01108158) - STRLEN(REPLACE(?templateMotifCigarP23908MF_01108158, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionP23908159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23908MF_01108160, 1, (STRLEN(?targetMotifMatchCigarP23908MF_01108160) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_01108160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23908MF_01108160, 1, (STRLEN(?targetMotifMatchCigarP23908MF_01108160) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_01108160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), '')))), '[^-]', ''))) AS ?step2171) .
BIND(((?step2171 + ?targetMotifMatchRegionMatchBeginPositionMF_01108161) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t172) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01108a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch177 faldo:location ?templateMotifSequenceMatchRegionP23908178 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23908180 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP23908MF_01108173 .
?templateMotifSequenceMatchRegionP23908178 faldo:begin ?templateMotifSequenceMatchBeginP23908179 .
?templateMotifSequenceMatchBeginP23908179 faldo:position ?templateMotifSequenceMatchBeginPositionP23908174 ;
faldo:reference isoform:P23908-1 .
?templateMotifSequenceProfileAlignmentOperationP23908180 edam:has_input signature:MF_01108 ;
rdf:type edam:operation_0300 .
?targetMotifMatch181 faldo:location ?targetMotifMatchRegionMatch182 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01108184 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP23908MF_01108175 .
?targetMotifMatchRegionMatch182 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01108183 .
?targetMotifMatchRegionMatchBeginMF_01108183 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01108176 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01108184 edam:has_input signature:MF_01108 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23908MF_01108173, 1, (STRLEN(?templateMotifCigarP23908MF_01108173) - STRLEN(REPLACE(?templateMotifCigarP23908MF_01108173, CONCAT('^(?:-*[^-]){', STR(((355 - ?templateMotifSequenceMatchBeginPositionP23908174) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23908MF_01108175, 1, (STRLEN(?targetMotifMatchCigarP23908MF_01108175) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_01108175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23908MF_01108175, 1, (STRLEN(?targetMotifMatchCigarP23908MF_01108175) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_01108175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) .
BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_01108176) - 1) AS ?thisPositionOn65) .
BIND(?thisPositionOn65 AS ?thisPositionOn66) .
BIND(?this AS ?pfs1t187) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01108a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
}
"xsd:string |
