| http://purl.uniprot.org/unirules/MF_01109#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:386157 up:source unirule:MF_01109 .
_:386158 up:source unirule:MF_01109 .
_:386159 up:source unirule:MF_01109 .
_:386160 up:source unirule:MF_01109 .
_:386161 up:source unirule:MF_01109 .
_:386162 up:source unirule:MF_01109 .
_:386163 up:source unirule:MF_01109 .
_:386164 up:source unirule:MF_01109 .
_:386165 up:source unirule:MF_01109 .
_:386166 up:source unirule:MF_01109 .
_:386167 up:source unirule:MF_01109 .
_:386168 up:source unirule:MF_01109 .
_:386169 up:source unirule:MF_01109 .
_:386170 up:source unirule:MF_01109 .
_:386171 up:source unirule:MF_01109 .
_:386172 up:source unirule:MF_01109 .
_:386173 up:source unirule:MF_01109 .
_:386174 up:source unirule:MF_01109 .
_:386175 up:source unirule:MF_01109 .
_:386176 up:source unirule:MF_01109 .
_:386177 up:source unirule:MF_01109 .
_:386178 up:source unirule:MF_01109 .
_:386179 up:source unirule:MF_01109 .
?this up:annotation ?annotation0 ,
?annotation2 ,
?annotation4 ;
up:classifiedWith GO:0004585 ,
GO:0005737 ,
keyword:808 ,
keyword:963 .
?annotation0 up:activity ?activity1 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity1 up:catalyticActivity ;
up:enzymeClass .
?annotation2 a up:Subcellular_Location_Annotation .
?annotation2li3 up:cellularComponent .
?annotation4 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.' .
?case5 up:classifiedWith GO:0006526 ,
keyword:28 ,
keyword:55 .
?case6 up:classifiedWith GO:0006527 ,
keyword:56 ;
up:recommendedName ?name7 .
?name7 up:ecName '2.1.3.3' ;
up:fullName 'Ornithine carbamoyltransferase, catabolic' ;
up:shortName 'OTCase' ;
rdf:type up:Structured_Name .
?case9 up:recommendedName ?name10 .
?name10 up:ecName '2.1.3.3' ;
up:fullName 'Ornithine carbamoyltransferase' ;
up:shortName 'OTCase' ;
rdf:type up:Structured_Name .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:58228 .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:58228 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:46911 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:58228 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf chebi:58228 .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:58228 .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:46911 .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf chebi:46911 .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation .
?pfsb70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?ligand72 rdfs:subClassOf chebi:58228 .
_:386180 a rdf:Statement ;
up:attribution _:386157 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:386181 a rdf:Statement ;
up:attribution _:386158 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:386182 a rdf:Statement ;
up:attribution _:386159 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:386183 a rdf:Statement ;
up:attribution _:386160 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:386184 a rdf:Statement ;
up:attribution _:386161 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:386185 a rdf:Statement ;
up:attribution _:386162 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004585 .
_:386186 a rdf:Statement ;
up:attribution _:386163 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:386187 a rdf:Statement ;
up:attribution _:386164 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:386188 a rdf:Statement ;
up:attribution _:386165 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:55 .
_:386189 a rdf:Statement ;
up:attribution _:386166 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006526 .
_:386190 a rdf:Statement ;
up:attribution _:386167 ;
rdf:subject ?case6 ;
rdf:predicate up:recommendedName ;
rdf:object ?name7 .
_:386191 a rdf:Statement ;
up:attribution _:386168 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:56 .
_:386192 a rdf:Statement ;
up:attribution _:386169 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006527 .
_:386193 a rdf:Statement ;
up:attribution _:386170 ;
rdf:subject ?case9 ;
rdf:predicate up:recommendedName ;
rdf:object ?name10 .
_:386194 a rdf:Statement ;
up:source unirule:MF_01109 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:386195 a rdf:Statement ;
up:attribution _:386171 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:386196 a rdf:Statement ;
up:source unirule:MF_01109 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:386197 a rdf:Statement ;
up:attribution _:386172 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:386198 a rdf:Statement ;
up:source unirule:MF_01109 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:386199 a rdf:Statement ;
up:attribution _:386173 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:386200 a rdf:Statement ;
up:source unirule:MF_01109 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:386201 a rdf:Statement ;
up:attribution _:386174 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:386202 a rdf:Statement ;
up:source unirule:MF_01109 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:386203 a rdf:Statement ;
up:attribution _:386175 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:386204 a rdf:Statement ;
up:source unirule:MF_01109 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:386205 a rdf:Statement ;
up:attribution _:386176 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:386206 a rdf:Statement ;
up:source unirule:MF_01109 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:386207 a rdf:Statement ;
up:attribution _:386177 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:386208 a rdf:Statement ;
up:source unirule:MF_01109 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:386209 a rdf:Statement ;
up:attribution _:386178 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:386210 a rdf:Statement ;
up:source unirule:MF_01109 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:386211 a rdf:Statement ;
up:attribution _:386179 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01109
#Rule MF_01109 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-09-18
VALUES ?supertaxon75 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01109 .
?thisOrganism rdfs:subClassOf+ ?supertaxon75 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_02102 .
})) .
BIND(URI(CONCAT(STR(?this), '#MF_01109a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_01109a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01109a4')) AS ?annotation4) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch80 faldo:location ?templateMotifSequenceMatchRegionP0439181 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0439183 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04391MF_0110976 .
?templateMotifSequenceMatchRegionP0439181 faldo:begin ?templateMotifSequenceMatchBeginP0439182 .
?templateMotifSequenceMatchBeginP0439182 faldo:position ?templateMotifSequenceMatchBeginPositionP0439177 ;
faldo:reference isoform:P04391-1 .
?templateMotifSequenceProfileAlignmentOperationP0439183 edam:has_input signature:MF_01109 ;
rdf:type edam:operation_0300 .
?targetMotifMatch84 faldo:location ?targetMotifMatchRegionMatch85 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0110987 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04391MF_0110978 .
?targetMotifMatchRegionMatch85 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0110986 .
?targetMotifMatchRegionMatchBeginMF_0110986 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0110979 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0110987 edam:has_input signature:MF_01109 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04391MF_0110976, 1, (STRLEN(?templateMotifCigarP04391MF_0110976) - STRLEN(REPLACE(?templateMotifCigarP04391MF_0110976, CONCAT('^(?:-*[^-]){', STR(((56 - ?templateMotifSequenceMatchBeginPositionP0439177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04391MF_0110978, 1, (STRLEN(?targetMotifMatchCigarP04391MF_0110978) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_0110978, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04391MF_0110978, 1, (STRLEN(?targetMotifMatchCigarP04391MF_0110978) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_0110978, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0110979) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04391MF_0110976, 1, (STRLEN(?templateMotifCigarP04391MF_0110976) - STRLEN(REPLACE(?templateMotifCigarP04391MF_0110976, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionP0439177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04391MF_0110978, 1, (STRLEN(?targetMotifMatchCigarP04391MF_0110978) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_0110978, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04391MF_0110978, 1, (STRLEN(?targetMotifMatchCigarP04391MF_0110978) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_0110978, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) .
BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0110979) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t92) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER (REGEX('S[TS]RT', SUBSTR(?thisSequenceValue, ?thisPositionOn17, (?thisPositionOn18 - ?thisPositionOn17)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01109a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch97 faldo:location ?templateMotifSequenceMatchRegionP0439198 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04391100 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04391MF_0110993 .
?templateMotifSequenceMatchRegionP0439198 faldo:begin ?templateMotifSequenceMatchBeginP0439199 .
?templateMotifSequenceMatchBeginP0439199 faldo:position ?templateMotifSequenceMatchBeginPositionP0439194 ;
faldo:reference isoform:P04391-1 .
?templateMotifSequenceProfileAlignmentOperationP04391100 edam:has_input signature:MF_01109 ;
rdf:type edam:operation_0300 .
?targetMotifMatch101 faldo:location ?targetMotifMatchRegionMatch102 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01109104 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04391MF_0110995 .
?targetMotifMatchRegionMatch102 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01109103 .
?targetMotifMatchRegionMatchBeginMF_01109103 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0110996 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01109104 edam:has_input signature:MF_01109 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04391MF_0110993, 1, (STRLEN(?templateMotifCigarP04391MF_0110993) - STRLEN(REPLACE(?templateMotifCigarP04391MF_0110993, CONCAT('^(?:-*[^-]){', STR(((134 - ?templateMotifSequenceMatchBeginPositionP0439194) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04391MF_0110995, 1, (STRLEN(?targetMotifMatchCigarP04391MF_0110995) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_0110995, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04391MF_0110995, 1, (STRLEN(?targetMotifMatchCigarP04391MF_0110995) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_0110995, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0110996) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04391MF_0110993, 1, (STRLEN(?templateMotifCigarP04391MF_0110993) - STRLEN(REPLACE(?templateMotifCigarP04391MF_0110993, CONCAT('^(?:-*[^-]){', STR(((137 - ?templateMotifSequenceMatchBeginPositionP0439194) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04391MF_0110995, 1, (STRLEN(?targetMotifMatchCigarP04391MF_0110995) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_0110995, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04391MF_0110995, 1, (STRLEN(?targetMotifMatchCigarP04391MF_0110995) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_0110995, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0110996) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER (REGEX('H[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)Q', SUBSTR(?thisSequenceValue, ?thisPositionOn24, (?thisPositionOn25 - ?thisPositionOn24)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01109a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch114 faldo:location ?templateMotifSequenceMatchRegionP04391115 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04391117 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04391MF_01109110 .
?templateMotifSequenceMatchRegionP04391115 faldo:begin ?templateMotifSequenceMatchBeginP04391116 .
?templateMotifSequenceMatchBeginP04391116 faldo:position ?templateMotifSequenceMatchBeginPositionP04391111 ;
faldo:reference isoform:P04391-1 .
?templateMotifSequenceProfileAlignmentOperationP04391117 edam:has_input signature:MF_01109 ;
rdf:type edam:operation_0300 .
?targetMotifMatch118 faldo:location ?targetMotifMatchRegionMatch119 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01109121 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04391MF_01109112 .
?targetMotifMatchRegionMatch119 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01109120 .
?targetMotifMatchRegionMatchBeginMF_01109120 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01109113 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01109121 edam:has_input signature:MF_01109 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04391MF_01109110, 1, (STRLEN(?templateMotifCigarP04391MF_01109110) - STRLEN(REPLACE(?templateMotifCigarP04391MF_01109110, CONCAT('^(?:-*[^-]){', STR(((236 - ?templateMotifSequenceMatchBeginPositionP04391111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04391MF_01109112, 1, (STRLEN(?targetMotifMatchCigarP04391MF_01109112) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_01109112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04391MF_01109112, 1, (STRLEN(?targetMotifMatchCigarP04391MF_01109112) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_01109112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) .
BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_01109113) - 1) AS ?thisPositionOn31) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04391MF_01109110, 1, (STRLEN(?templateMotifCigarP04391MF_01109110) - STRLEN(REPLACE(?templateMotifCigarP04391MF_01109110, CONCAT('^(?:-*[^-]){', STR(((237 - ?templateMotifSequenceMatchBeginPositionP04391111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04391MF_01109112, 1, (STRLEN(?targetMotifMatchCigarP04391MF_01109112) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_01109112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04391MF_01109112, 1, (STRLEN(?targetMotifMatchCigarP04391MF_01109112) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_01109112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) .
BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_01109113) - 1) AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER (REGEX('S[MIL]', SUBSTR(?thisSequenceValue, ?thisPositionOn31, (?thisPositionOn32 - ?thisPositionOn31)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01109a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionP04391132 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04391134 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04391MF_01109127 .
?templateMotifSequenceMatchRegionP04391132 faldo:begin ?templateMotifSequenceMatchBeginP04391133 .
?templateMotifSequenceMatchBeginP04391133 faldo:position ?templateMotifSequenceMatchBeginPositionP04391128 ;
faldo:reference isoform:P04391-1 .
?templateMotifSequenceProfileAlignmentOperationP04391134 edam:has_input signature:MF_01109 ;
rdf:type edam:operation_0300 .
?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01109138 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04391MF_01109129 .
?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01109137 .
?targetMotifMatchRegionMatchBeginMF_01109137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01109130 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01109138 edam:has_input signature:MF_01109 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04391MF_01109127, 1, (STRLEN(?templateMotifCigarP04391MF_01109127) - STRLEN(REPLACE(?templateMotifCigarP04391MF_01109127, CONCAT('^(?:-*[^-]){', STR(((274 - ?templateMotifSequenceMatchBeginPositionP04391128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04391MF_01109129, 1, (STRLEN(?targetMotifMatchCigarP04391MF_01109129) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_01109129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04391MF_01109129, 1, (STRLEN(?targetMotifMatchCigarP04391MF_01109129) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_01109129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) .
BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_01109130) - 1) AS ?thisPositionOn38) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04391MF_01109127, 1, (STRLEN(?templateMotifCigarP04391MF_01109127) - STRLEN(REPLACE(?templateMotifCigarP04391MF_01109127, CONCAT('^(?:-*[^-]){', STR(((275 - ?templateMotifSequenceMatchBeginPositionP04391128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04391MF_01109129, 1, (STRLEN(?targetMotifMatchCigarP04391MF_01109129) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_01109129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04391MF_01109129, 1, (STRLEN(?targetMotifMatchCigarP04391MF_01109129) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_01109129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_01109130) - 1) AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, (?thisPositionOn39 - ?thisPositionOn38)) = 'CL')) .
BIND(URI(CONCAT(STR(?this), '#MF_01109a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionP04391149 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04391151 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04391MF_01109144 .
?templateMotifSequenceMatchRegionP04391149 faldo:begin ?templateMotifSequenceMatchBeginP04391150 .
?templateMotifSequenceMatchBeginP04391150 faldo:position ?templateMotifSequenceMatchBeginPositionP04391145 ;
faldo:reference isoform:P04391-1 .
?templateMotifSequenceProfileAlignmentOperationP04391151 edam:has_input signature:MF_01109 ;
rdf:type edam:operation_0300 .
?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01109155 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04391MF_01109146 .
?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01109154 .
?targetMotifMatchRegionMatchBeginMF_01109154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01109147 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01109155 edam:has_input signature:MF_01109 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04391MF_01109144, 1, (STRLEN(?templateMotifCigarP04391MF_01109144) - STRLEN(REPLACE(?templateMotifCigarP04391MF_01109144, CONCAT('^(?:-*[^-]){', STR(((83 - ?templateMotifSequenceMatchBeginPositionP04391145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04391MF_01109146, 1, (STRLEN(?targetMotifMatchCigarP04391MF_01109146) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_01109146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04391MF_01109146, 1, (STRLEN(?targetMotifMatchCigarP04391MF_01109146) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_01109146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) .
BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_01109147) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t158) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) .
FILTER (REGEX('[QN]', SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01109a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch163 faldo:location ?templateMotifSequenceMatchRegionP04391164 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04391166 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04391MF_01109159 .
?templateMotifSequenceMatchRegionP04391164 faldo:begin ?templateMotifSequenceMatchBeginP04391165 .
?templateMotifSequenceMatchBeginP04391165 faldo:position ?templateMotifSequenceMatchBeginPositionP04391160 ;
faldo:reference isoform:P04391-1 .
?templateMotifSequenceProfileAlignmentOperationP04391166 edam:has_input signature:MF_01109 ;
rdf:type edam:operation_0300 .
?targetMotifMatch167 faldo:location ?targetMotifMatchRegionMatch168 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01109170 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04391MF_01109161 .
?targetMotifMatchRegionMatch168 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01109169 .
?targetMotifMatchRegionMatchBeginMF_01109169 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01109162 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01109170 edam:has_input signature:MF_01109 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04391MF_01109159, 1, (STRLEN(?templateMotifCigarP04391MF_01109159) - STRLEN(REPLACE(?templateMotifCigarP04391MF_01109159, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionP04391160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04391MF_01109161, 1, (STRLEN(?targetMotifMatchCigarP04391MF_01109161) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_01109161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04391MF_01109161, 1, (STRLEN(?targetMotifMatchCigarP04391MF_01109161) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_01109161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) .
BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_01109162) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t173) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01109a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch178 faldo:location ?templateMotifSequenceMatchRegionP04391179 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04391181 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04391MF_01109174 .
?templateMotifSequenceMatchRegionP04391179 faldo:begin ?templateMotifSequenceMatchBeginP04391180 .
?templateMotifSequenceMatchBeginP04391180 faldo:position ?templateMotifSequenceMatchBeginPositionP04391175 ;
faldo:reference isoform:P04391-1 .
?templateMotifSequenceProfileAlignmentOperationP04391181 edam:has_input signature:MF_01109 ;
rdf:type edam:operation_0300 .
?targetMotifMatch182 faldo:location ?targetMotifMatchRegionMatch183 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01109185 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04391MF_01109176 .
?targetMotifMatchRegionMatch183 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01109184 .
?targetMotifMatchRegionMatchBeginMF_01109184 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01109177 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01109185 edam:has_input signature:MF_01109 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04391MF_01109174, 1, (STRLEN(?templateMotifCigarP04391MF_01109174) - STRLEN(REPLACE(?templateMotifCigarP04391MF_01109174, CONCAT('^(?:-*[^-]){', STR(((168 - ?templateMotifSequenceMatchBeginPositionP04391175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04391MF_01109176, 1, (STRLEN(?targetMotifMatchCigarP04391MF_01109176) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_01109176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04391MF_01109176, 1, (STRLEN(?targetMotifMatchCigarP04391MF_01109176) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_01109176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), '')))), '[^-]', ''))) AS ?step2187) .
BIND(((?step2187 + ?targetMotifMatchRegionMatchBeginPositionMF_01109177) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t188) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01109a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch193 faldo:location ?templateMotifSequenceMatchRegionP04391194 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04391196 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04391MF_01109189 .
?templateMotifSequenceMatchRegionP04391194 faldo:begin ?templateMotifSequenceMatchBeginP04391195 .
?templateMotifSequenceMatchBeginP04391195 faldo:position ?templateMotifSequenceMatchBeginPositionP04391190 ;
faldo:reference isoform:P04391-1 .
?templateMotifSequenceProfileAlignmentOperationP04391196 edam:has_input signature:MF_01109 ;
rdf:type edam:operation_0300 .
?targetMotifMatch197 faldo:location ?targetMotifMatchRegionMatch198 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01109200 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04391MF_01109191 .
?targetMotifMatchRegionMatch198 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01109199 .
?targetMotifMatchRegionMatchBeginMF_01109199 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01109192 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01109200 edam:has_input signature:MF_01109 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04391MF_01109189, 1, (STRLEN(?templateMotifCigarP04391MF_01109189) - STRLEN(REPLACE(?templateMotifCigarP04391MF_01109189, CONCAT('^(?:-*[^-]){', STR(((232 - ?templateMotifSequenceMatchBeginPositionP04391190) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1201) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04391MF_01109191, 1, (STRLEN(?targetMotifMatchCigarP04391MF_01109191) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_01109191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04391MF_01109191, 1, (STRLEN(?targetMotifMatchCigarP04391MF_01109191) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_01109191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), '')))), '[^-]', ''))) AS ?step2202) .
BIND(((?step2202 + ?targetMotifMatchRegionMatchBeginPositionMF_01109192) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs1t203) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01109a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch208 faldo:location ?templateMotifSequenceMatchRegionP04391209 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04391211 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04391MF_01109204 .
?templateMotifSequenceMatchRegionP04391209 faldo:begin ?templateMotifSequenceMatchBeginP04391210 .
?templateMotifSequenceMatchBeginP04391210 faldo:position ?templateMotifSequenceMatchBeginPositionP04391205 ;
faldo:reference isoform:P04391-1 .
?templateMotifSequenceProfileAlignmentOperationP04391211 edam:has_input signature:MF_01109 ;
rdf:type edam:operation_0300 .
?targetMotifMatch212 faldo:location ?targetMotifMatchRegionMatch213 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01109215 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04391MF_01109206 .
?targetMotifMatchRegionMatch213 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01109214 .
?targetMotifMatchRegionMatchBeginMF_01109214 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01109207 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01109215 edam:has_input signature:MF_01109 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04391MF_01109204, 1, (STRLEN(?templateMotifCigarP04391MF_01109204) - STRLEN(REPLACE(?templateMotifCigarP04391MF_01109204, CONCAT('^(?:-*[^-]){', STR(((320 - ?templateMotifSequenceMatchBeginPositionP04391205) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1216) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04391MF_01109206, 1, (STRLEN(?targetMotifMatchCigarP04391MF_01109206) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_01109206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04391MF_01109206, 1, (STRLEN(?targetMotifMatchCigarP04391MF_01109206) - STRLEN(REPLACE(?targetMotifMatchCigarP04391MF_01109206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), '')))), '[^-]', ''))) AS ?step2217) .
BIND(((?step2217 + ?targetMotifMatchRegionMatchBeginPositionMF_01109207) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs1t218) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01109a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:proteome .
} UNION {
?this up:proteome ?p219 .
?p219 skos:narrower .
}
BIND(?this AS ?case5) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:proteome .
} UNION {
?this up:proteome ?p220 .
?p220 skos:narrower .
}
BIND(?this AS ?case6) .
BIND(URI(CONCAT(STR(?this), '#MF_01109a7')) AS ?name7) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
{
?this up:proteome .
} UNION {
?this up:proteome ?p221 .
?p221 skos:narrower .
}
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
{
FILTER (! (EXISTS {
{
?this up:proteome .
} UNION {
?this up:proteome ?p222 .
?p222 skos:narrower .
}
})) .
} UNION {
{
?this up:proteome .
} UNION {
?this up:proteome ?p223 .
?p223 skos:narrower .
}
}
BIND(?this AS ?case9) .
BIND(URI(CONCAT(STR(?this), '#MF_01109a10')) AS ?name10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
{
?this up:proteome .
} UNION {
?this up:proteome ?p224 .
?p224 skos:narrower .
}
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:91347 .
})) .
BIND(?this AS ?case11) .
}
}
"xsd:string |
