| http://purl.uniprot.org/unirules/MF_01253#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:441630 up:source unirule:MF_01253 .
_:441631 up:source unirule:MF_01253 .
_:441632 up:source unirule:MF_01253 .
_:441633 up:source unirule:MF_01253 .
_:441634 up:source unirule:MF_01253 .
_:441635 up:source unirule:MF_01253 .
_:441636 up:source unirule:MF_01253 .
_:441637 up:source unirule:MF_01253 .
_:441638 up:source unirule:MF_01253 .
_:441639 up:source unirule:MF_01253 .
_:441640 up:source unirule:MF_01253 .
_:441641 up:source unirule:MF_01253 .
_:441642 up:source unirule:MF_01253 .
_:441643 up:source unirule:MF_01253 .
_:441644 up:source unirule:MF_01253 .
_:441645 up:source unirule:MF_01253 .
_:441646 up:source unirule:MF_01253 .
_:441647 up:source unirule:MF_01253 .
_:441648 up:source unirule:MF_01253 .
_:441649 up:source unirule:MF_01253 .
_:441650 up:source unirule:MF_01253 .
_:441651 up:source unirule:MF_01253 .
_:441652 up:source unirule:MF_01253 .
_:441653 up:source unirule:MF_01253 .
_:441654 up:source unirule:MF_01253 .
_:441655 up:source unirule:MF_01253 .
_:441656 up:source unirule:MF_01253 .
_:441657 up:source unirule:MF_01253 .
_:441658 up:source unirule:MF_01253 .
_:441659 up:source unirule:MF_01253 .
_:441660 up:source unirule:MF_01253 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0000703 ,
GO:0003906 ,
GO:0006281 ,
keyword:227 ,
keyword:234 ,
keyword:238 ,
keyword:326 ,
keyword:378 ,
keyword:456 ,
keyword:511 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Endonuclease 8' ;
rdf:type up:Structured_Name .
?name1 up:ecName '3.2.2.-' ,
'4.2.99.18' ;
up:fullName 'DNA glycosylase/AP lyase Nei' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'DNA-(apurinic or apyrimidinic site) lyase Nei' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'Endonuclease VIII' ;
rdf:type up:Structured_Name .
?gene4 skos:prefLabel 'nei' .
?annotation5 a up:Function_Annotation ;
rdfs:comment "Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine. Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates." .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:cofactor chebi:29105 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 zinc ion per subunit.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the FPG family.' .
?case10 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 ,
keyword:863 .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
rdf:type up:Initiator_Methionine_Annotation ;
rdfs:comment 'Removed' .
?pfsb13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Schiff-base intermediate with DNA' .
?pfsb19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor; for beta-elimination activity' .
?pfsb31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor; for delta-elimination activity' .
?pfsb37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf chebi:16991 .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
up:ligand ?ligand52 ;
rdf:type up:Binding_Site_Annotation .
?pfsb50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand52 rdfs:subClassOf chebi:16991 .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
up:ligand ?ligand59 ;
rdf:type up:Binding_Site_Annotation .
?pfsb57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?ligand59 rdfs:subClassOf chebi:16991 .
_:441661 a rdf:Statement ;
up:attribution _:441630 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:441662 a rdf:Statement ;
up:attribution _:441631 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:441663 a rdf:Statement ;
up:attribution _:441632 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:441664 a rdf:Statement ;
up:attribution _:441633 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:441665 a rdf:Statement ;
up:attribution _:441634 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:441666 a rdf:Statement ;
up:attribution _:441635 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:441667 a rdf:Statement ;
up:attribution _:441636 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:441668 a rdf:Statement ;
up:attribution _:441637 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:441669 a rdf:Statement ;
up:attribution _:441638 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:441670 a rdf:Statement ;
up:attribution _:441639 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:227 .
_:441671 a rdf:Statement ;
up:attribution _:441640 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:234 .
_:441672 a rdf:Statement ;
up:attribution _:441641 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:441673 a rdf:Statement ;
up:attribution _:441642 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:326 .
_:441674 a rdf:Statement ;
up:attribution _:441643 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:441675 a rdf:Statement ;
up:attribution _:441644 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:441676 a rdf:Statement ;
up:attribution _:441645 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:511 .
_:441677 a rdf:Statement ;
up:attribution _:441646 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003906 .
_:441678 a rdf:Statement ;
up:attribution _:441647 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000703 .
_:441679 a rdf:Statement ;
up:attribution _:441648 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006281 .
_:441680 a rdf:Statement ;
up:attribution _:441649 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:441681 a rdf:Statement ;
up:attribution _:441650 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:441682 a rdf:Statement ;
up:attribution _:441651 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:863 .
_:441683 a rdf:Statement ;
up:attribution _:441652 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:441684 a rdf:Statement ;
up:source unirule:MF_01253 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:441685 a rdf:Statement ;
up:attribution _:441653 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:441686 a rdf:Statement ;
up:source unirule:MF_01253 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:441687 a rdf:Statement ;
up:attribution _:441654 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:441688 a rdf:Statement ;
up:source unirule:MF_01253 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:441689 a rdf:Statement ;
up:attribution _:441655 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:441690 a rdf:Statement ;
up:source unirule:MF_01253 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:441691 a rdf:Statement ;
up:attribution _:441656 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:441692 a rdf:Statement ;
up:source unirule:MF_01253 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:441693 a rdf:Statement ;
up:attribution _:441657 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:441694 a rdf:Statement ;
up:source unirule:MF_01253 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:441695 a rdf:Statement ;
up:attribution _:441658 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:441696 a rdf:Statement ;
up:source unirule:MF_01253 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:441697 a rdf:Statement ;
up:attribution _:441659 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:441698 a rdf:Statement ;
up:source unirule:MF_01253 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:441699 a rdf:Statement ;
up:attribution _:441660 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01253
#Rule MF_01253 Created by:? on:2005-02-28 Modified by:Elisabeth Coudert on:2024-01-30
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01253 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_01253a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01253a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01253a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01253a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_01253a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01253a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01253a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01253a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch66 faldo:location ?templateMotifSequenceMatchRegionP5046567 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5046569 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50465MF_0125362 .
?templateMotifSequenceMatchRegionP5046567 faldo:begin ?templateMotifSequenceMatchBeginP5046568 .
?templateMotifSequenceMatchBeginP5046568 faldo:position ?templateMotifSequenceMatchBeginPositionP5046563 ;
faldo:reference isoform:P50465-1 .
?templateMotifSequenceProfileAlignmentOperationP5046569 edam:has_input signature:MF_01253 ;
rdf:type edam:operation_0300 .
?targetMotifMatch70 faldo:location ?targetMotifMatchRegionMatch71 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0125373 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50465MF_0125364 .
?targetMotifMatchRegionMatch71 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0125372 .
?targetMotifMatchRegionMatchBeginMF_0125372 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0125365 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0125373 edam:has_input signature:MF_01253 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_01253a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch79 faldo:location ?templateMotifSequenceMatchRegionP5046580 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5046582 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50465MF_0125375 .
?templateMotifSequenceMatchRegionP5046580 faldo:begin ?templateMotifSequenceMatchBeginP5046581 .
?templateMotifSequenceMatchBeginP5046581 faldo:position ?templateMotifSequenceMatchBeginPositionP5046576 ;
faldo:reference isoform:P50465-1 .
?templateMotifSequenceProfileAlignmentOperationP5046582 edam:has_input signature:MF_01253 ;
rdf:type edam:operation_0300 .
?targetMotifMatch83 faldo:location ?targetMotifMatchRegionMatch84 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0125386 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50465MF_0125377 .
?targetMotifMatchRegionMatch84 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0125385 .
?targetMotifMatchRegionMatchBeginMF_0125385 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0125378 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0125386 edam:has_input signature:MF_01253 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50465MF_0125375, 1, (STRLEN(?templateMotifCigarP50465MF_0125375) - STRLEN(REPLACE(?templateMotifCigarP50465MF_0125375, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP5046576) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50465MF_0125377, 1, (STRLEN(?targetMotifMatchCigarP50465MF_0125377) - STRLEN(REPLACE(?targetMotifMatchCigarP50465MF_0125377, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50465MF_0125377, 1, (STRLEN(?targetMotifMatchCigarP50465MF_0125377) - STRLEN(REPLACE(?targetMotifMatchCigarP50465MF_0125377, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) .
BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0125378) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'P')) .
BIND(URI(CONCAT(STR(?this), '#MF_01253a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch94 faldo:location ?templateMotifSequenceMatchRegionP5046595 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5046597 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50465MF_0125390 .
?templateMotifSequenceMatchRegionP5046595 faldo:begin ?templateMotifSequenceMatchBeginP5046596 .
?templateMotifSequenceMatchBeginP5046596 faldo:position ?templateMotifSequenceMatchBeginPositionP5046591 ;
faldo:reference isoform:P50465-1 .
?templateMotifSequenceProfileAlignmentOperationP5046597 edam:has_input signature:MF_01253 ;
rdf:type edam:operation_0300 .
?targetMotifMatch98 faldo:location ?targetMotifMatchRegionMatch99 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01253101 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50465MF_0125392 .
?targetMotifMatchRegionMatch99 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01253100 .
?targetMotifMatchRegionMatchBeginMF_01253100 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0125393 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01253101 edam:has_input signature:MF_01253 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50465MF_0125390, 1, (STRLEN(?templateMotifCigarP50465MF_0125390) - STRLEN(REPLACE(?templateMotifCigarP50465MF_0125390, CONCAT('^(?:-*[^-]){', STR(((3 - ?templateMotifSequenceMatchBeginPositionP5046591) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50465MF_0125392, 1, (STRLEN(?targetMotifMatchCigarP50465MF_0125392) - STRLEN(REPLACE(?targetMotifMatchCigarP50465MF_0125392, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50465MF_0125392, 1, (STRLEN(?targetMotifMatchCigarP50465MF_0125392) - STRLEN(REPLACE(?targetMotifMatchCigarP50465MF_0125392, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0125393) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01253a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionP50465110 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP50465112 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50465MF_01253105 .
?templateMotifSequenceMatchRegionP50465110 faldo:begin ?templateMotifSequenceMatchBeginP50465111 .
?templateMotifSequenceMatchBeginP50465111 faldo:position ?templateMotifSequenceMatchBeginPositionP50465106 ;
faldo:reference isoform:P50465-1 .
?templateMotifSequenceProfileAlignmentOperationP50465112 edam:has_input signature:MF_01253 ;
rdf:type edam:operation_0300 .
?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01253116 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50465MF_01253107 .
?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01253115 .
?targetMotifMatchRegionMatchBeginMF_01253115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01253108 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01253116 edam:has_input signature:MF_01253 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50465MF_01253105, 1, (STRLEN(?templateMotifCigarP50465MF_01253105) - STRLEN(REPLACE(?templateMotifCigarP50465MF_01253105, CONCAT('^(?:-*[^-]){', STR(((53 - ?templateMotifSequenceMatchBeginPositionP50465106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50465MF_01253107, 1, (STRLEN(?targetMotifMatchCigarP50465MF_01253107) - STRLEN(REPLACE(?targetMotifMatchCigarP50465MF_01253107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50465MF_01253107, 1, (STRLEN(?targetMotifMatchCigarP50465MF_01253107) - STRLEN(REPLACE(?targetMotifMatchCigarP50465MF_01253107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) .
BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_01253108) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01253a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch124 faldo:location ?templateMotifSequenceMatchRegionP50465125 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP50465127 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50465MF_01253120 .
?templateMotifSequenceMatchRegionP50465125 faldo:begin ?templateMotifSequenceMatchBeginP50465126 .
?templateMotifSequenceMatchBeginP50465126 faldo:position ?templateMotifSequenceMatchBeginPositionP50465121 ;
faldo:reference isoform:P50465-1 .
?templateMotifSequenceProfileAlignmentOperationP50465127 edam:has_input signature:MF_01253 ;
rdf:type edam:operation_0300 .
?targetMotifMatch128 faldo:location ?targetMotifMatchRegionMatch129 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01253131 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50465MF_01253122 .
?targetMotifMatchRegionMatch129 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01253130 .
?targetMotifMatchRegionMatchBeginMF_01253130 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01253123 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01253131 edam:has_input signature:MF_01253 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50465MF_01253120, 1, (STRLEN(?templateMotifCigarP50465MF_01253120) - STRLEN(REPLACE(?templateMotifCigarP50465MF_01253120, CONCAT('^(?:-*[^-]){', STR(((253 - ?templateMotifSequenceMatchBeginPositionP50465121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50465MF_01253122, 1, (STRLEN(?targetMotifMatchCigarP50465MF_01253122) - STRLEN(REPLACE(?targetMotifMatchCigarP50465MF_01253122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50465MF_01253122, 1, (STRLEN(?targetMotifMatchCigarP50465MF_01253122) - STRLEN(REPLACE(?targetMotifMatchCigarP50465MF_01253122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) .
BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_01253123) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t134) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01253a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionP50465140 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP50465142 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50465MF_01253135 .
?templateMotifSequenceMatchRegionP50465140 faldo:begin ?templateMotifSequenceMatchBeginP50465141 .
?templateMotifSequenceMatchBeginP50465141 faldo:position ?templateMotifSequenceMatchBeginPositionP50465136 ;
faldo:reference isoform:P50465-1 .
?templateMotifSequenceProfileAlignmentOperationP50465142 edam:has_input signature:MF_01253 ;
rdf:type edam:operation_0300 .
?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01253146 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50465MF_01253137 .
?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01253145 .
?targetMotifMatchRegionMatchBeginMF_01253145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01253138 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01253146 edam:has_input signature:MF_01253 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50465MF_01253135, 1, (STRLEN(?templateMotifCigarP50465MF_01253135) - STRLEN(REPLACE(?templateMotifCigarP50465MF_01253135, CONCAT('^(?:-*[^-]){', STR(((70 - ?templateMotifSequenceMatchBeginPositionP50465136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50465MF_01253137, 1, (STRLEN(?targetMotifMatchCigarP50465MF_01253137) - STRLEN(REPLACE(?targetMotifMatchCigarP50465MF_01253137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50465MF_01253137, 1, (STRLEN(?targetMotifMatchCigarP50465MF_01253137) - STRLEN(REPLACE(?targetMotifMatchCigarP50465MF_01253137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) .
BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_01253138) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01253a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionP50465155 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP50465157 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50465MF_01253150 .
?templateMotifSequenceMatchRegionP50465155 faldo:begin ?templateMotifSequenceMatchBeginP50465156 .
?templateMotifSequenceMatchBeginP50465156 faldo:position ?templateMotifSequenceMatchBeginPositionP50465151 ;
faldo:reference isoform:P50465-1 .
?templateMotifSequenceProfileAlignmentOperationP50465157 edam:has_input signature:MF_01253 ;
rdf:type edam:operation_0300 .
?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01253161 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50465MF_01253152 .
?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01253160 .
?targetMotifMatchRegionMatchBeginMF_01253160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01253153 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01253161 edam:has_input signature:MF_01253 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50465MF_01253150, 1, (STRLEN(?templateMotifCigarP50465MF_01253150) - STRLEN(REPLACE(?templateMotifCigarP50465MF_01253150, CONCAT('^(?:-*[^-]){', STR(((125 - ?templateMotifSequenceMatchBeginPositionP50465151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50465MF_01253152, 1, (STRLEN(?targetMotifMatchCigarP50465MF_01253152) - STRLEN(REPLACE(?targetMotifMatchCigarP50465MF_01253152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50465MF_01253152, 1, (STRLEN(?targetMotifMatchCigarP50465MF_01253152) - STRLEN(REPLACE(?targetMotifMatchCigarP50465MF_01253152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) .
BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_01253153) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t164) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01253a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch169 faldo:location ?templateMotifSequenceMatchRegionP50465170 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP50465172 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50465MF_01253165 .
?templateMotifSequenceMatchRegionP50465170 faldo:begin ?templateMotifSequenceMatchBeginP50465171 .
?templateMotifSequenceMatchBeginP50465171 faldo:position ?templateMotifSequenceMatchBeginPositionP50465166 ;
faldo:reference isoform:P50465-1 .
?templateMotifSequenceProfileAlignmentOperationP50465172 edam:has_input signature:MF_01253 ;
rdf:type edam:operation_0300 .
?targetMotifMatch173 faldo:location ?targetMotifMatchRegionMatch174 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01253176 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50465MF_01253167 .
?targetMotifMatchRegionMatch174 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01253175 .
?targetMotifMatchRegionMatchBeginMF_01253175 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01253168 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01253176 edam:has_input signature:MF_01253 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50465MF_01253165, 1, (STRLEN(?templateMotifCigarP50465MF_01253165) - STRLEN(REPLACE(?templateMotifCigarP50465MF_01253165, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionP50465166) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50465MF_01253167, 1, (STRLEN(?targetMotifMatchCigarP50465MF_01253167) - STRLEN(REPLACE(?targetMotifMatchCigarP50465MF_01253167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50465MF_01253167, 1, (STRLEN(?targetMotifMatchCigarP50465MF_01253167) - STRLEN(REPLACE(?targetMotifMatchCigarP50465MF_01253167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), '')))), '[^-]', ''))) AS ?step2178) .
BIND(((?step2178 + ?targetMotifMatchRegionMatchBeginPositionMF_01253168) - 1) AS ?thisPositionOn60) .
BIND(?thisPositionOn60 AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t179) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01253a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this a up:Protein .
?this rdfs:seeAlso .
BIND(?this AS ?case10) .
}
}
"xsd:string |
