| http://purl.uniprot.org/unirules/MF_01274#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:453411 up:source unirule:MF_01274 .
_:453412 up:source unirule:MF_01274 .
_:453413 up:source unirule:MF_01274 .
_:453414 up:source unirule:MF_01274 .
_:453415 up:source unirule:MF_01274 .
_:453416 up:source unirule:MF_01274 .
_:453417 up:source unirule:MF_01274 .
_:453418 up:source unirule:MF_01274 .
_:453419 up:source unirule:MF_01274 .
_:453420 up:source unirule:MF_01274 .
_:453421 up:source unirule:MF_01274 .
_:453422 up:source unirule:MF_01274 .
_:453423 up:source unirule:MF_01274 .
_:453424 up:source unirule:MF_01274 .
_:453425 up:source unirule:MF_01274 .
_:453426 up:source unirule:MF_01274 .
_:453427 up:source unirule:MF_01274 .
_:453428 up:source unirule:MF_01274 .
_:453429 up:source unirule:MF_01274 .
_:453430 up:source unirule:MF_01274 .
_:453431 up:source unirule:MF_01274 .
_:453432 up:source unirule:MF_01274 .
_:453433 up:source unirule:MF_01274 .
_:453434 up:source unirule:MF_01274 .
_:453435 up:source unirule:MF_01274 .
_:453436 up:source unirule:MF_01274 .
_:453437 up:source unirule:MF_01274 .
_:453438 up:source unirule:MF_01274 .
_:453439 up:source unirule:MF_01274 .
_:453440 up:source unirule:MF_01274 .
_:453441 up:source unirule:MF_01274 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation12 ;
up:classifiedWith GO:0004594 ,
GO:0005524 ,
GO:0005737 ,
GO:0015937 ,
keyword:173 ,
keyword:418 ,
keyword:547 ,
keyword:630 ,
keyword:67 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.1.33' ;
up:fullName 'Type III pantothenate kinase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'PanK-III' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Pantothenic acid kinase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'coaX' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:28938 ,
chebi:29103 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'A monovalent cation. Ammonium or potassium.' .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 1/5.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation10 a up:Subcellular_Location_Annotation .
?annotation10li11 up:cellularComponent .
?annotation12 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the type III pantothenate kinase family.' .
?case13 up:classifiedWith GO:0043169 ,
keyword:479 .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:29103 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:30616 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf ?molecule33 .
?molecule33 rdfs:label 'substrate' .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf ?molecule47 .
?molecule47 rdfs:label 'substrate' .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:30616 .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf ?molecule62 .
?molecule62 rdfs:label 'substrate' .
_:453442 a rdf:Statement ;
up:attribution _:453411 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:453443 a rdf:Statement ;
up:attribution _:453412 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:453444 a rdf:Statement ;
up:attribution _:453413 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:453445 a rdf:Statement ;
up:attribution _:453414 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:453446 a rdf:Statement ;
up:attribution _:453415 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:453447 a rdf:Statement ;
up:attribution _:453416 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:453448 a rdf:Statement ;
up:attribution _:453417 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:453449 a rdf:Statement ;
up:attribution _:453418 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:453450 a rdf:Statement ;
up:attribution _:453419 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:453451 a rdf:Statement ;
up:attribution _:453420 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:453452 a rdf:Statement ;
up:attribution _:453421 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:453453 a rdf:Statement ;
up:attribution _:453422 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:453454 a rdf:Statement ;
up:attribution _:453423 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:453455 a rdf:Statement ;
up:attribution _:453424 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:173 .
_:453456 a rdf:Statement ;
up:attribution _:453425 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:453457 a rdf:Statement ;
up:attribution _:453426 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:453458 a rdf:Statement ;
up:attribution _:453427 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:453459 a rdf:Statement ;
up:attribution _:453428 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:630 .
_:453460 a rdf:Statement ;
up:attribution _:453429 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:453461 a rdf:Statement ;
up:attribution _:453430 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004594 .
_:453462 a rdf:Statement ;
up:attribution _:453431 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015937 .
_:453463 a rdf:Statement ;
up:attribution _:453432 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:453464 a rdf:Statement ;
up:attribution _:453433 ;
rdf:subject ?case13 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:453465 a rdf:Statement ;
up:attribution _:453434 ;
rdf:subject ?case13 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0043169 .
_:453466 a rdf:Statement ;
up:source unirule:MF_01274 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:453467 a rdf:Statement ;
up:attribution _:453435 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:453468 a rdf:Statement ;
up:source unirule:MF_01274 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:453469 a rdf:Statement ;
up:attribution _:453436 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:453470 a rdf:Statement ;
up:source unirule:MF_01274 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:453471 a rdf:Statement ;
up:attribution _:453437 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:453472 a rdf:Statement ;
up:source unirule:MF_01274 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:453473 a rdf:Statement ;
up:attribution _:453438 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:453474 a rdf:Statement ;
up:source unirule:MF_01274 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:453475 a rdf:Statement ;
up:attribution _:453439 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:453476 a rdf:Statement ;
up:source unirule:MF_01274 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:453477 a rdf:Statement ;
up:attribution _:453440 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:453478 a rdf:Statement ;
up:source unirule:MF_01274 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:453479 a rdf:Statement ;
up:attribution _:453441 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01274
#Rule MF_01274 Created by:? on:2006-11-21 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01274 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01274a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01274a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01274a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01274a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01274a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01274a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01274a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01274a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01274a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01274a12')) AS ?annotation12) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch69 faldo:location ?templateMotifSequenceMatchRegionQ9HWC170 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9HWC172 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9HWC1MF_0127465 .
?templateMotifSequenceMatchRegionQ9HWC170 faldo:begin ?templateMotifSequenceMatchBeginQ9HWC171 .
?templateMotifSequenceMatchBeginQ9HWC171 faldo:position ?templateMotifSequenceMatchBeginPositionQ9HWC166 ;
faldo:reference isoform:Q9HWC1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9HWC172 edam:has_input signature:MF_01274 ;
rdf:type edam:operation_0300 .
?targetMotifMatch73 faldo:location ?targetMotifMatchRegionMatch74 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0127476 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9HWC1MF_0127467 .
?targetMotifMatchRegionMatch74 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0127475 .
?targetMotifMatchRegionMatchBeginMF_0127475 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0127468 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0127476 edam:has_input signature:MF_01274 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_4) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HWC1MF_0127465, 1, (STRLEN(?templateMotifCigarQ9HWC1MF_0127465) - STRLEN(REPLACE(?templateMotifCigarQ9HWC1MF_0127465, CONCAT('^(?:-*[^-]){', STR(((121 - ?templateMotifSequenceMatchBeginPositionQ9HWC166) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HWC1MF_0127467, 1, (STRLEN(?targetMotifMatchCigarQ9HWC1MF_0127467) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HWC1MF_0127467, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HWC1MF_0127467, 1, (STRLEN(?targetMotifMatchCigarQ9HWC1MF_0127467) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HWC1MF_0127467, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) .
BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0127468) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01274a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch84 faldo:location ?templateMotifSequenceMatchRegionQ9HWC185 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9HWC187 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9HWC1MF_0127480 .
?templateMotifSequenceMatchRegionQ9HWC185 faldo:begin ?templateMotifSequenceMatchBeginQ9HWC186 .
?templateMotifSequenceMatchBeginQ9HWC186 faldo:position ?templateMotifSequenceMatchBeginPositionQ9HWC181 ;
faldo:reference isoform:Q9HWC1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9HWC187 edam:has_input signature:MF_01274 ;
rdf:type edam:operation_0300 .
?targetMotifMatch88 faldo:location ?targetMotifMatchRegionMatch89 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0127491 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9HWC1MF_0127482 .
?targetMotifMatchRegionMatch89 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0127490 .
?targetMotifMatchRegionMatchBeginMF_0127490 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0127483 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0127491 edam:has_input signature:MF_01274 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HWC1MF_0127480, 1, (STRLEN(?templateMotifCigarQ9HWC1MF_0127480) - STRLEN(REPLACE(?templateMotifCigarQ9HWC1MF_0127480, CONCAT('^(?:-*[^-]){', STR(((6 - ?templateMotifSequenceMatchBeginPositionQ9HWC181) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HWC1MF_0127482, 1, (STRLEN(?targetMotifMatchCigarQ9HWC1MF_0127482) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HWC1MF_0127482, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HWC1MF_0127482, 1, (STRLEN(?targetMotifMatchCigarQ9HWC1MF_0127482) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HWC1MF_0127482, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) .
BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0127483) - 1) AS ?thisPositionOn26) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HWC1MF_0127480, 1, (STRLEN(?templateMotifCigarQ9HWC1MF_0127480) - STRLEN(REPLACE(?templateMotifCigarQ9HWC1MF_0127480, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionQ9HWC181) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HWC1MF_0127482, 1, (STRLEN(?targetMotifMatchCigarQ9HWC1MF_0127482) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HWC1MF_0127482, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HWC1MF_0127482, 1, (STRLEN(?targetMotifMatchCigarQ9HWC1MF_0127482) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HWC1MF_0127482, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) .
BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0127483) - 1) AS ?thisPositionOn27) .
BIND(?this AS ?pfs2t96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((BOUND(?thisPositionOn26) && BOUND(?thisPositionOn27))) .
BIND(URI(CONCAT(STR(?this), '#MF_01274a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch101 faldo:location ?templateMotifSequenceMatchRegionQ9HWC1102 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9HWC1104 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9HWC1MF_0127497 .
?templateMotifSequenceMatchRegionQ9HWC1102 faldo:begin ?templateMotifSequenceMatchBeginQ9HWC1103 .
?templateMotifSequenceMatchBeginQ9HWC1103 faldo:position ?templateMotifSequenceMatchBeginPositionQ9HWC198 ;
faldo:reference isoform:Q9HWC1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9HWC1104 edam:has_input signature:MF_01274 ;
rdf:type edam:operation_0300 .
?targetMotifMatch105 faldo:location ?targetMotifMatchRegionMatch106 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01274108 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9HWC1MF_0127499 .
?targetMotifMatchRegionMatch106 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01274107 .
?targetMotifMatchRegionMatchBeginMF_01274107 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01274100 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01274108 edam:has_input signature:MF_01274 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HWC1MF_0127497, 1, (STRLEN(?templateMotifCigarQ9HWC1MF_0127497) - STRLEN(REPLACE(?templateMotifCigarQ9HWC1MF_0127497, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionQ9HWC198) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HWC1MF_0127499, 1, (STRLEN(?targetMotifMatchCigarQ9HWC1MF_0127499) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HWC1MF_0127499, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HWC1MF_0127499, 1, (STRLEN(?targetMotifMatchCigarQ9HWC1MF_0127499) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HWC1MF_0127499, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) .
BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_01274100) - 1) AS ?thisPositionOn34) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HWC1MF_0127497, 1, (STRLEN(?templateMotifCigarQ9HWC1MF_0127497) - STRLEN(REPLACE(?templateMotifCigarQ9HWC1MF_0127497, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionQ9HWC198) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HWC1MF_0127499, 1, (STRLEN(?targetMotifMatchCigarQ9HWC1MF_0127499) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HWC1MF_0127499, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HWC1MF_0127499, 1, (STRLEN(?targetMotifMatchCigarQ9HWC1MF_0127499) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HWC1MF_0127499, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) .
BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_01274100) - 1) AS ?thisPositionOn35) .
BIND(?this AS ?pfs2t113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse31) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]D[ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn34, (?thisPositionOn35 - ?thisPositionOn34)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01274a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch118 faldo:location ?templateMotifSequenceMatchRegionQ9HWC1119 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9HWC1121 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9HWC1MF_01274114 .
?templateMotifSequenceMatchRegionQ9HWC1119 faldo:begin ?templateMotifSequenceMatchBeginQ9HWC1120 .
?templateMotifSequenceMatchBeginQ9HWC1120 faldo:position ?templateMotifSequenceMatchBeginPositionQ9HWC1115 ;
faldo:reference isoform:Q9HWC1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9HWC1121 edam:has_input signature:MF_01274 ;
rdf:type edam:operation_0300 .
?targetMotifMatch122 faldo:location ?targetMotifMatchRegionMatch123 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01274125 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9HWC1MF_01274116 .
?targetMotifMatchRegionMatch123 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01274124 .
?targetMotifMatchRegionMatchBeginMF_01274124 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01274117 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01274125 edam:has_input signature:MF_01274 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HWC1MF_01274114, 1, (STRLEN(?templateMotifCigarQ9HWC1MF_01274114) - STRLEN(REPLACE(?templateMotifCigarQ9HWC1MF_01274114, CONCAT('^(?:-*[^-]){', STR(((101 - ?templateMotifSequenceMatchBeginPositionQ9HWC1115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HWC1MF_01274116, 1, (STRLEN(?targetMotifMatchCigarQ9HWC1MF_01274116) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HWC1MF_01274116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HWC1MF_01274116, 1, (STRLEN(?targetMotifMatchCigarQ9HWC1MF_01274116) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HWC1MF_01274116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) .
BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_01274117) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs2t128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01274a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionQ9HWC1134 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9HWC1136 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9HWC1MF_01274129 .
?templateMotifSequenceMatchRegionQ9HWC1134 faldo:begin ?templateMotifSequenceMatchBeginQ9HWC1135 .
?templateMotifSequenceMatchBeginQ9HWC1135 faldo:position ?templateMotifSequenceMatchBeginPositionQ9HWC1130 ;
faldo:reference isoform:Q9HWC1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9HWC1136 edam:has_input signature:MF_01274 ;
rdf:type edam:operation_0300 .
?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01274140 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9HWC1MF_01274131 .
?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01274139 .
?targetMotifMatchRegionMatchBeginMF_01274139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01274132 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01274140 edam:has_input signature:MF_01274 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HWC1MF_01274129, 1, (STRLEN(?templateMotifCigarQ9HWC1MF_01274129) - STRLEN(REPLACE(?templateMotifCigarQ9HWC1MF_01274129, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionQ9HWC1130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HWC1MF_01274131, 1, (STRLEN(?targetMotifMatchCigarQ9HWC1MF_01274131) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HWC1MF_01274131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HWC1MF_01274131, 1, (STRLEN(?targetMotifMatchCigarQ9HWC1MF_01274131) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HWC1MF_01274131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_01274132) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs2t143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse45) .
FILTER (REGEX('[YF]', SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01274a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionQ9HWC1149 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9HWC1151 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9HWC1MF_01274144 .
?templateMotifSequenceMatchRegionQ9HWC1149 faldo:begin ?templateMotifSequenceMatchBeginQ9HWC1150 .
?templateMotifSequenceMatchBeginQ9HWC1150 faldo:position ?templateMotifSequenceMatchBeginPositionQ9HWC1145 ;
faldo:reference isoform:Q9HWC1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9HWC1151 edam:has_input signature:MF_01274 ;
rdf:type edam:operation_0300 .
?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01274155 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9HWC1MF_01274146 .
?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01274154 .
?targetMotifMatchRegionMatchBeginMF_01274154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01274147 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01274155 edam:has_input signature:MF_01274 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HWC1MF_01274144, 1, (STRLEN(?templateMotifCigarQ9HWC1MF_01274144) - STRLEN(REPLACE(?templateMotifCigarQ9HWC1MF_01274144, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionQ9HWC1145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HWC1MF_01274146, 1, (STRLEN(?targetMotifMatchCigarQ9HWC1MF_01274146) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HWC1MF_01274146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HWC1MF_01274146, 1, (STRLEN(?targetMotifMatchCigarQ9HWC1MF_01274146) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HWC1MF_01274146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) .
BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_01274147) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs2t158) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01274a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch163 faldo:location ?templateMotifSequenceMatchRegionQ9HWC1164 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9HWC1166 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9HWC1MF_01274159 .
?templateMotifSequenceMatchRegionQ9HWC1164 faldo:begin ?templateMotifSequenceMatchBeginQ9HWC1165 .
?templateMotifSequenceMatchBeginQ9HWC1165 faldo:position ?templateMotifSequenceMatchBeginPositionQ9HWC1160 ;
faldo:reference isoform:Q9HWC1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9HWC1166 edam:has_input signature:MF_01274 ;
rdf:type edam:operation_0300 .
?targetMotifMatch167 faldo:location ?targetMotifMatchRegionMatch168 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01274170 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9HWC1MF_01274161 .
?targetMotifMatchRegionMatch168 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01274169 .
?targetMotifMatchRegionMatchBeginMF_01274169 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01274162 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01274170 edam:has_input signature:MF_01274 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9HWC1MF_01274159, 1, (STRLEN(?templateMotifCigarQ9HWC1MF_01274159) - STRLEN(REPLACE(?templateMotifCigarQ9HWC1MF_01274159, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionQ9HWC1160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9HWC1MF_01274161, 1, (STRLEN(?targetMotifMatchCigarQ9HWC1MF_01274161) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HWC1MF_01274161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9HWC1MF_01274161, 1, (STRLEN(?targetMotifMatchCigarQ9HWC1MF_01274161) - STRLEN(REPLACE(?targetMotifMatchCigarQ9HWC1MF_01274161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) .
BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_01274162) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs2t173) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse60) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01274a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag174) .
}
BIND(IF(BOUND(?tagFT_4), ?caseWithTag174, ?UNBOUND_VARIABLE) AS ?case13) .
}
"xsd:string |
