| http://purl.uniprot.org/unirules/MF_01285#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:459445 up:source unirule:MF_01285 .
_:459446 up:source unirule:MF_01285 .
_:459447 up:source unirule:MF_01285 .
_:459448 up:source unirule:MF_01285 .
_:459449 up:source unirule:MF_01285 .
_:459450 up:source unirule:MF_01285 .
_:459451 up:source unirule:MF_01285 .
_:459452 up:source unirule:MF_01285 .
_:459453 up:source unirule:MF_01285 .
_:459454 up:source unirule:MF_01285 .
_:459455 up:source unirule:MF_01285 .
_:459456 up:source unirule:MF_01285 .
_:459457 up:source unirule:MF_01285 .
_:459458 up:source unirule:MF_01285 .
_:459459 up:source unirule:MF_01285 .
_:459460 up:source unirule:MF_01285 .
_:459461 up:source unirule:MF_01285 .
_:459462 up:source unirule:MF_01285 .
_:459463 up:source unirule:MF_01285 .
_:459464 up:source unirule:MF_01285 .
_:459465 up:source unirule:MF_01285 .
_:459466 up:source unirule:MF_01285 .
_:459467 up:source unirule:MF_01285 .
_:459468 up:source unirule:MF_01285 .
_:459469 up:source unirule:MF_01285 .
_:459470 up:source unirule:MF_01285 .
_:459471 up:source unirule:MF_01285 .
_:459472 up:source unirule:MF_01285 .
_:459473 up:source unirule:MF_01285 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0000166 ,
GO:0000287 ,
GO:0009398 ,
GO:0016301 ,
GO:0016773 ,
keyword:285 ,
keyword:288 ,
keyword:418 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.1.161' ;
up:fullName 'Riboflavin kinase' ;
up:shortName 'RFK' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'CTP-dependent riboflavin kinase' ;
rdf:type up:Structured_Name .
?name2 up:fullName "CTP:riboflavin 5'-phosphotransferase" ;
rdf:type up:Structured_Name .
?name3 up:fullName 'Flavokinase' ;
rdf:type up:Structured_Name .
?gene4 skos:prefLabel 'ribK' .
?annotation5 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN).' .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 Mg(2+) ion per subunit.' .
?annotation9 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; FMN biosynthesis; FMN from riboflavin (CTP route): step 1/1.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the archaeal riboflavin kinase family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:58069 .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:58069 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:18420 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:18420 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:58210 .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf chebi:58210 .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf chebi:58210 .
_:459474 a rdf:Statement ;
up:attribution _:459445 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:459475 a rdf:Statement ;
up:attribution _:459446 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:459476 a rdf:Statement ;
up:attribution _:459447 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:459477 a rdf:Statement ;
up:attribution _:459448 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:459478 a rdf:Statement ;
up:attribution _:459449 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:459479 a rdf:Statement ;
up:attribution _:459450 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:459480 a rdf:Statement ;
up:attribution _:459451 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:459481 a rdf:Statement ;
up:attribution _:459452 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:459482 a rdf:Statement ;
up:attribution _:459453 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:459483 a rdf:Statement ;
up:attribution _:459454 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:459484 a rdf:Statement ;
up:attribution _:459455 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:459485 a rdf:Statement ;
up:attribution _:459456 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:288 .
_:459486 a rdf:Statement ;
up:attribution _:459457 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:459487 a rdf:Statement ;
up:attribution _:459458 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:459488 a rdf:Statement ;
up:attribution _:459459 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:459489 a rdf:Statement ;
up:attribution _:459460 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:459490 a rdf:Statement ;
up:attribution _:459461 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:459491 a rdf:Statement ;
up:attribution _:459462 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000166 .
_:459492 a rdf:Statement ;
up:attribution _:459463 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:459493 a rdf:Statement ;
up:attribution _:459464 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016301 .
_:459494 a rdf:Statement ;
up:attribution _:459465 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016773 .
_:459495 a rdf:Statement ;
up:attribution _:459466 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009398 .
_:459496 a rdf:Statement ;
up:source unirule:MF_01285 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:459497 a rdf:Statement ;
up:attribution _:459467 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:459498 a rdf:Statement ;
up:source unirule:MF_01285 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:459499 a rdf:Statement ;
up:attribution _:459468 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:459500 a rdf:Statement ;
up:source unirule:MF_01285 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:459501 a rdf:Statement ;
up:attribution _:459469 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:459502 a rdf:Statement ;
up:source unirule:MF_01285 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:459503 a rdf:Statement ;
up:attribution _:459470 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:459504 a rdf:Statement ;
up:source unirule:MF_01285 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:459505 a rdf:Statement ;
up:attribution _:459471 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:459506 a rdf:Statement ;
up:source unirule:MF_01285 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:459507 a rdf:Statement ;
up:attribution _:459472 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:459508 a rdf:Statement ;
up:source unirule:MF_01285 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:459509 a rdf:Statement ;
up:attribution _:459473 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01285
#Rule MF_01285 Created by:? on:2008-02-05 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01285 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_01285a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01285a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01285a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01285a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_01285a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01285a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01285a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01285a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01285a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch64 faldo:location ?templateMotifSequenceMatchRegionQ6036565 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6036567 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ60365MF_0128560 .
?templateMotifSequenceMatchRegionQ6036565 faldo:begin ?templateMotifSequenceMatchBeginQ6036566 .
?templateMotifSequenceMatchBeginQ6036566 faldo:position ?templateMotifSequenceMatchBeginPositionQ6036561 ;
faldo:reference isoform:Q60365-1 .
?templateMotifSequenceProfileAlignmentOperationQ6036567 edam:has_input signature:MF_01285 ;
rdf:type edam:operation_0300 .
?targetMotifMatch68 faldo:location ?targetMotifMatchRegionMatch69 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0128571 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ60365MF_0128562 .
?targetMotifMatchRegionMatch69 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0128570 .
?targetMotifMatchRegionMatchBeginMF_0128570 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0128563 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0128571 edam:has_input signature:MF_01285 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ60365MF_0128560, 1, (STRLEN(?templateMotifCigarQ60365MF_0128560) - STRLEN(REPLACE(?templateMotifCigarQ60365MF_0128560, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionQ6036561) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ60365MF_0128562, 1, (STRLEN(?targetMotifMatchCigarQ60365MF_0128562) - STRLEN(REPLACE(?targetMotifMatchCigarQ60365MF_0128562, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ60365MF_0128562, 1, (STRLEN(?targetMotifMatchCigarQ60365MF_0128562) - STRLEN(REPLACE(?targetMotifMatchCigarQ60365MF_0128562, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) .
BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0128563) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ60365MF_0128560, 1, (STRLEN(?templateMotifCigarQ60365MF_0128560) - STRLEN(REPLACE(?templateMotifCigarQ60365MF_0128560, CONCAT('^(?:-*[^-]){', STR(((15 - ?templateMotifSequenceMatchBeginPositionQ6036561) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ60365MF_0128562, 1, (STRLEN(?targetMotifMatchCigarQ60365MF_0128562) - STRLEN(REPLACE(?targetMotifMatchCigarQ60365MF_0128562, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ60365MF_0128562, 1, (STRLEN(?targetMotifMatchCigarQ60365MF_0128562) - STRLEN(REPLACE(?targetMotifMatchCigarQ60365MF_0128562, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) .
BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0128563) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((BOUND(?thisPositionOn16) && BOUND(?thisPositionOn17))) .
BIND(URI(CONCAT(STR(?this), '#MF_01285a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch81 faldo:location ?templateMotifSequenceMatchRegionQ6036582 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6036584 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ60365MF_0128577 .
?templateMotifSequenceMatchRegionQ6036582 faldo:begin ?templateMotifSequenceMatchBeginQ6036583 .
?templateMotifSequenceMatchBeginQ6036583 faldo:position ?templateMotifSequenceMatchBeginPositionQ6036578 ;
faldo:reference isoform:Q60365-1 .
?templateMotifSequenceProfileAlignmentOperationQ6036584 edam:has_input signature:MF_01285 ;
rdf:type edam:operation_0300 .
?targetMotifMatch85 faldo:location ?targetMotifMatchRegionMatch86 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0128588 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ60365MF_0128579 .
?targetMotifMatchRegionMatch86 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0128587 .
?targetMotifMatchRegionMatchBeginMF_0128587 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0128580 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0128588 edam:has_input signature:MF_01285 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ60365MF_0128577, 1, (STRLEN(?templateMotifCigarQ60365MF_0128577) - STRLEN(REPLACE(?templateMotifCigarQ60365MF_0128577, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionQ6036578) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ60365MF_0128579, 1, (STRLEN(?targetMotifMatchCigarQ60365MF_0128579) - STRLEN(REPLACE(?targetMotifMatchCigarQ60365MF_0128579, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ60365MF_0128579, 1, (STRLEN(?targetMotifMatchCigarQ60365MF_0128579) - STRLEN(REPLACE(?targetMotifMatchCigarQ60365MF_0128579, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) .
BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0128580) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ60365MF_0128577, 1, (STRLEN(?templateMotifCigarQ60365MF_0128577) - STRLEN(REPLACE(?templateMotifCigarQ60365MF_0128577, CONCAT('^(?:-*[^-]){', STR(((111 - ?templateMotifSequenceMatchBeginPositionQ6036578) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ60365MF_0128579, 1, (STRLEN(?targetMotifMatchCigarQ60365MF_0128579) - STRLEN(REPLACE(?targetMotifMatchCigarQ60365MF_0128579, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ60365MF_0128579, 1, (STRLEN(?targetMotifMatchCigarQ60365MF_0128579) - STRLEN(REPLACE(?targetMotifMatchCigarQ60365MF_0128579, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0128580) - 1) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((BOUND(?thisPositionOn23) && BOUND(?thisPositionOn24))) .
BIND(URI(CONCAT(STR(?this), '#MF_01285a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionQ6036599 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ60365101 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ60365MF_0128594 .
?templateMotifSequenceMatchRegionQ6036599 faldo:begin ?templateMotifSequenceMatchBeginQ60365100 .
?templateMotifSequenceMatchBeginQ60365100 faldo:position ?templateMotifSequenceMatchBeginPositionQ6036595 ;
faldo:reference isoform:Q60365-1 .
?templateMotifSequenceProfileAlignmentOperationQ60365101 edam:has_input signature:MF_01285 ;
rdf:type edam:operation_0300 .
?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01285105 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ60365MF_0128596 .
?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01285104 .
?targetMotifMatchRegionMatchBeginMF_01285104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0128597 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01285105 edam:has_input signature:MF_01285 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ60365MF_0128594, 1, (STRLEN(?templateMotifCigarQ60365MF_0128594) - STRLEN(REPLACE(?templateMotifCigarQ60365MF_0128594, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionQ6036595) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ60365MF_0128596, 1, (STRLEN(?targetMotifMatchCigarQ60365MF_0128596) - STRLEN(REPLACE(?targetMotifMatchCigarQ60365MF_0128596, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ60365MF_0128596, 1, (STRLEN(?targetMotifMatchCigarQ60365MF_0128596) - STRLEN(REPLACE(?targetMotifMatchCigarQ60365MF_0128596, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0128597) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01285a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionQ60365114 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ60365116 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ60365MF_01285109 .
?templateMotifSequenceMatchRegionQ60365114 faldo:begin ?templateMotifSequenceMatchBeginQ60365115 .
?templateMotifSequenceMatchBeginQ60365115 faldo:position ?templateMotifSequenceMatchBeginPositionQ60365110 ;
faldo:reference isoform:Q60365-1 .
?templateMotifSequenceProfileAlignmentOperationQ60365116 edam:has_input signature:MF_01285 ;
rdf:type edam:operation_0300 .
?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01285120 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ60365MF_01285111 .
?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01285119 .
?targetMotifMatchRegionMatchBeginMF_01285119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01285112 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01285120 edam:has_input signature:MF_01285 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ60365MF_01285109, 1, (STRLEN(?templateMotifCigarQ60365MF_01285109) - STRLEN(REPLACE(?templateMotifCigarQ60365MF_01285109, CONCAT('^(?:-*[^-]){', STR(((41 - ?templateMotifSequenceMatchBeginPositionQ60365110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ60365MF_01285111, 1, (STRLEN(?targetMotifMatchCigarQ60365MF_01285111) - STRLEN(REPLACE(?targetMotifMatchCigarQ60365MF_01285111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ60365MF_01285111, 1, (STRLEN(?targetMotifMatchCigarQ60365MF_01285111) - STRLEN(REPLACE(?targetMotifMatchCigarQ60365MF_01285111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) .
BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_01285112) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01285a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch128 faldo:location ?templateMotifSequenceMatchRegionQ60365129 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ60365131 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ60365MF_01285124 .
?templateMotifSequenceMatchRegionQ60365129 faldo:begin ?templateMotifSequenceMatchBeginQ60365130 .
?templateMotifSequenceMatchBeginQ60365130 faldo:position ?templateMotifSequenceMatchBeginPositionQ60365125 ;
faldo:reference isoform:Q60365-1 .
?templateMotifSequenceProfileAlignmentOperationQ60365131 edam:has_input signature:MF_01285 ;
rdf:type edam:operation_0300 .
?targetMotifMatch132 faldo:location ?targetMotifMatchRegionMatch133 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01285135 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ60365MF_01285126 .
?targetMotifMatchRegionMatch133 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01285134 .
?targetMotifMatchRegionMatchBeginMF_01285134 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01285127 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01285135 edam:has_input signature:MF_01285 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ60365MF_01285124, 1, (STRLEN(?templateMotifCigarQ60365MF_01285124) - STRLEN(REPLACE(?templateMotifCigarQ60365MF_01285124, CONCAT('^(?:-*[^-]){', STR(((95 - ?templateMotifSequenceMatchBeginPositionQ60365125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ60365MF_01285126, 1, (STRLEN(?targetMotifMatchCigarQ60365MF_01285126) - STRLEN(REPLACE(?targetMotifMatchCigarQ60365MF_01285126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ60365MF_01285126, 1, (STRLEN(?targetMotifMatchCigarQ60365MF_01285126) - STRLEN(REPLACE(?targetMotifMatchCigarQ60365MF_01285126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) .
BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_01285127) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t138) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01285a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch143 faldo:location ?templateMotifSequenceMatchRegionQ60365144 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ60365146 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ60365MF_01285139 .
?templateMotifSequenceMatchRegionQ60365144 faldo:begin ?templateMotifSequenceMatchBeginQ60365145 .
?templateMotifSequenceMatchBeginQ60365145 faldo:position ?templateMotifSequenceMatchBeginPositionQ60365140 ;
faldo:reference isoform:Q60365-1 .
?templateMotifSequenceProfileAlignmentOperationQ60365146 edam:has_input signature:MF_01285 ;
rdf:type edam:operation_0300 .
?targetMotifMatch147 faldo:location ?targetMotifMatchRegionMatch148 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01285150 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ60365MF_01285141 .
?targetMotifMatchRegionMatch148 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01285149 .
?targetMotifMatchRegionMatchBeginMF_01285149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01285142 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01285150 edam:has_input signature:MF_01285 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ60365MF_01285139, 1, (STRLEN(?templateMotifCigarQ60365MF_01285139) - STRLEN(REPLACE(?templateMotifCigarQ60365MF_01285139, CONCAT('^(?:-*[^-]){', STR(((96 - ?templateMotifSequenceMatchBeginPositionQ60365140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ60365MF_01285141, 1, (STRLEN(?targetMotifMatchCigarQ60365MF_01285141) - STRLEN(REPLACE(?targetMotifMatchCigarQ60365MF_01285141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ60365MF_01285141, 1, (STRLEN(?targetMotifMatchCigarQ60365MF_01285141) - STRLEN(REPLACE(?targetMotifMatchCigarQ60365MF_01285141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) .
BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_01285142) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t153) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01285a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch158 faldo:location ?templateMotifSequenceMatchRegionQ60365159 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ60365161 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ60365MF_01285154 .
?templateMotifSequenceMatchRegionQ60365159 faldo:begin ?templateMotifSequenceMatchBeginQ60365160 .
?templateMotifSequenceMatchBeginQ60365160 faldo:position ?templateMotifSequenceMatchBeginPositionQ60365155 ;
faldo:reference isoform:Q60365-1 .
?templateMotifSequenceProfileAlignmentOperationQ60365161 edam:has_input signature:MF_01285 ;
rdf:type edam:operation_0300 .
?targetMotifMatch162 faldo:location ?targetMotifMatchRegionMatch163 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01285165 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ60365MF_01285156 .
?targetMotifMatchRegionMatch163 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01285164 .
?targetMotifMatchRegionMatchBeginMF_01285164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01285157 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01285165 edam:has_input signature:MF_01285 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ60365MF_01285154, 1, (STRLEN(?templateMotifCigarQ60365MF_01285154) - STRLEN(REPLACE(?templateMotifCigarQ60365MF_01285154, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionQ60365155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ60365MF_01285156, 1, (STRLEN(?targetMotifMatchCigarQ60365MF_01285156) - STRLEN(REPLACE(?targetMotifMatchCigarQ60365MF_01285156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ60365MF_01285156, 1, (STRLEN(?targetMotifMatchCigarQ60365MF_01285156) - STRLEN(REPLACE(?targetMotifMatchCigarQ60365MF_01285156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) .
BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_01285157) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t168) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01285a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
}
"xsd:string |
