| http://purl.uniprot.org/unirules/MF_01288#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:461365 up:source unirule:MF_01288 .
_:461366 up:source unirule:MF_01288 .
_:461367 up:source unirule:MF_01288 .
_:461368 up:source unirule:MF_01288 .
_:461369 up:source unirule:MF_01288 .
_:461370 up:source unirule:MF_01288 .
_:461371 up:source unirule:MF_01288 .
_:461372 up:source unirule:MF_01288 .
_:461373 up:source unirule:MF_01288 .
_:461374 up:source unirule:MF_01288 .
_:461375 up:source unirule:MF_01288 .
_:461376 up:source unirule:MF_01288 .
_:461377 up:source unirule:MF_01288 .
_:461378 up:source unirule:MF_01288 .
_:461379 up:source unirule:MF_01288 .
_:461380 up:source unirule:MF_01288 .
_:461381 up:source unirule:MF_01288 .
_:461382 up:source unirule:MF_01288 .
_:461383 up:source unirule:MF_01288 .
_:461384 up:source unirule:MF_01288 .
_:461385 up:source unirule:MF_01288 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ,
?annotation5 ;
up:classifiedWith GO:0050032 ,
keyword:456 .
?gene0 skos:prefLabel 'rhmD' .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy-L-rhamnonate (KDR).' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 a up:Annotation ;
rdfs:comment 'Reaction proceeds via a syn dehydration.' .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the mandelate racemase/muconate lactonizing enzyme family. RhamD subfamily.' .
?case6 up:classifiedWith GO:0000287 ,
keyword:460 ,
keyword:479 .
?case7 up:recommendedName ?name8 .
?name8 up:ecName '4.2.1.90' ;
up:fullName 'Putative L-rhamnonate dehydratase' ;
up:shortName 'RhamD' ;
rdf:type up:Structured_Name .
?case9 up:recommendedName ?name10 .
?name10 up:ecName '4.2.1.90' ;
up:fullName 'L-rhamnonate dehydratase' ;
up:shortName 'RhamD' ;
rdf:type up:Structured_Name .
?pfs12 up:annotation ?annotation13 ,
?annotation19 ,
?annotation25 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:18420 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:18420 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:18420 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf ?molecule42 .
?molecule42 rdfs:label 'substrate' .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf ?molecule50 .
?molecule50 rdfs:label 'substrate' .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf ?molecule58 .
?molecule58 rdfs:label 'substrate' .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Increases basicity of active site His' .
?pfsb63 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfs67 up:annotation ?annotation68 .
?annotation68 faldo:begin ?pfsb69 ;
faldo:end ?pfse70 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb69 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfse70 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
_:461386 a rdf:Statement ;
up:attribution _:461365 ;
rdf:subject ?gene0 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene0 .
_:461387 a rdf:Statement ;
up:attribution _:461366 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:461388 a rdf:Statement ;
up:attribution _:461367 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:461389 a rdf:Statement ;
up:attribution _:461368 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:461390 a rdf:Statement ;
up:attribution _:461369 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:461391 a rdf:Statement ;
up:attribution _:461370 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:461392 a rdf:Statement ;
up:attribution _:461371 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050032 .
_:461393 a rdf:Statement ;
up:attribution _:461372 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:461394 a rdf:Statement ;
up:attribution _:461373 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:461395 a rdf:Statement ;
up:attribution _:461374 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:461396 a rdf:Statement ;
up:attribution _:461375 ;
rdf:subject ?case7 ;
rdf:predicate up:recommendedName ;
rdf:object ?name8 .
_:461397 a rdf:Statement ;
up:attribution _:461376 ;
rdf:subject ?case9 ;
rdf:predicate up:recommendedName ;
rdf:object ?name10 .
_:461398 a rdf:Statement ;
up:source unirule:MF_01288 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:461399 a rdf:Statement ;
up:attribution _:461377 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:461400 a rdf:Statement ;
up:source unirule:MF_01288 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:461401 a rdf:Statement ;
up:attribution _:461378 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:461402 a rdf:Statement ;
up:source unirule:MF_01288 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:461403 a rdf:Statement ;
up:attribution _:461379 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:461404 a rdf:Statement ;
up:source unirule:MF_01288 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:461405 a rdf:Statement ;
up:attribution _:461380 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:461406 a rdf:Statement ;
up:source unirule:MF_01288 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:461407 a rdf:Statement ;
up:attribution _:461381 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:461408 a rdf:Statement ;
up:source unirule:MF_01288 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:461409 a rdf:Statement ;
up:attribution _:461382 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:461410 a rdf:Statement ;
up:source unirule:MF_01288 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:461411 a rdf:Statement ;
up:attribution _:461383 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:461412 a rdf:Statement ;
up:source unirule:MF_01288 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:461413 a rdf:Statement ;
up:attribution _:461384 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:461414 a rdf:Statement ;
up:source unirule:MF_01288 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:461415 a rdf:Statement ;
up:attribution _:461385 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01288
#Rule MF_01288 Created by:? on:2008-09-19 Modified by:Edouard de Castro on:2023-01-26
VALUES ?supertaxon73 {taxon:201174 taxon:1224 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01288 .
?thisOrganism rdfs:subClassOf+ ?supertaxon73 .
BIND(URI(CONCAT(STR(?this), '#MF_01288a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_01288a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01288a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01288a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch78 faldo:location ?templateMotifSequenceMatchRegionQ8ZNF979 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZNF981 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZNF9MF_0128874 .
?templateMotifSequenceMatchRegionQ8ZNF979 faldo:begin ?templateMotifSequenceMatchBeginQ8ZNF980 .
?templateMotifSequenceMatchBeginQ8ZNF980 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZNF975 ;
faldo:reference isoform:Q8ZNF9-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZNF981 edam:has_input signature:MF_01288 ;
rdf:type edam:operation_0300 .
?targetMotifMatch82 faldo:location ?targetMotifMatchRegionMatch83 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0128885 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZNF9MF_0128876 .
?targetMotifMatchRegionMatch83 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0128884 .
?targetMotifMatchRegionMatchBeginMF_0128884 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0128877 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0128885 edam:has_input signature:MF_01288 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZNF9MF_0128874, 1, (STRLEN(?templateMotifCigarQ8ZNF9MF_0128874) - STRLEN(REPLACE(?templateMotifCigarQ8ZNF9MF_0128874, CONCAT('^(?:-*[^-]){', STR(((226 - ?templateMotifSequenceMatchBeginPositionQ8ZNF975) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZNF9MF_0128876, 1, (STRLEN(?targetMotifMatchCigarQ8ZNF9MF_0128876) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZNF9MF_0128876, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZNF9MF_0128876, 1, (STRLEN(?targetMotifMatchCigarQ8ZNF9MF_0128876) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZNF9MF_0128876, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) .
BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0128877) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZNF9MF_0128874, 1, (STRLEN(?templateMotifCigarQ8ZNF9MF_0128874) - STRLEN(REPLACE(?templateMotifCigarQ8ZNF9MF_0128874, CONCAT('^(?:-*[^-]){', STR(((252 - ?templateMotifSequenceMatchBeginPositionQ8ZNF975) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZNF9MF_0128876, 1, (STRLEN(?targetMotifMatchCigarQ8ZNF9MF_0128876) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZNF9MF_0128876, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZNF9MF_0128876, 1, (STRLEN(?targetMotifMatchCigarQ8ZNF9MF_0128876) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZNF9MF_0128876, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) .
BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0128877) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'E')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZNF9MF_0128874, 1, (STRLEN(?templateMotifCigarQ8ZNF9MF_0128874) - STRLEN(REPLACE(?templateMotifCigarQ8ZNF9MF_0128874, CONCAT('^(?:-*[^-]){', STR(((280 - ?templateMotifSequenceMatchBeginPositionQ8ZNF975) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZNF9MF_0128876, 1, (STRLEN(?targetMotifMatchCigarQ8ZNF9MF_0128876) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZNF9MF_0128876, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZNF9MF_0128876, 1, (STRLEN(?targetMotifMatchCigarQ8ZNF9MF_0128876) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZNF9MF_0128876, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) .
BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0128877) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'E')) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch99 faldo:location ?templateMotifSequenceMatchRegionQ8ZNF9100 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZNF9102 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZNF9MF_0128895 .
?templateMotifSequenceMatchRegionQ8ZNF9100 faldo:begin ?templateMotifSequenceMatchBeginQ8ZNF9101 .
?templateMotifSequenceMatchBeginQ8ZNF9101 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZNF996 ;
faldo:reference isoform:Q8ZNF9-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZNF9102 edam:has_input signature:MF_01288 ;
rdf:type edam:operation_0300 .
?targetMotifMatch103 faldo:location ?targetMotifMatchRegionMatch104 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01288106 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZNF9MF_0128897 .
?targetMotifMatchRegionMatch104 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01288105 .
?targetMotifMatchRegionMatchBeginMF_01288105 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0128898 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01288106 edam:has_input signature:MF_01288 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZNF9MF_0128895, 1, (STRLEN(?templateMotifCigarQ8ZNF9MF_0128895) - STRLEN(REPLACE(?templateMotifCigarQ8ZNF9MF_0128895, CONCAT('^(?:-*[^-]){', STR(((329 - ?templateMotifSequenceMatchBeginPositionQ8ZNF996) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZNF9MF_0128897, 1, (STRLEN(?targetMotifMatchCigarQ8ZNF9MF_0128897) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZNF9MF_0128897, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZNF9MF_0128897, 1, (STRLEN(?targetMotifMatchCigarQ8ZNF9MF_0128897) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZNF9MF_0128897, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0128898) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs2t109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01288a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch114 faldo:location ?templateMotifSequenceMatchRegionQ8ZNF9115 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZNF9117 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZNF9MF_01288110 .
?templateMotifSequenceMatchRegionQ8ZNF9115 faldo:begin ?templateMotifSequenceMatchBeginQ8ZNF9116 .
?templateMotifSequenceMatchBeginQ8ZNF9116 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZNF9111 ;
faldo:reference isoform:Q8ZNF9-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZNF9117 edam:has_input signature:MF_01288 ;
rdf:type edam:operation_0300 .
?targetMotifMatch118 faldo:location ?targetMotifMatchRegionMatch119 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01288121 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZNF9MF_01288112 .
?targetMotifMatchRegionMatch119 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01288120 .
?targetMotifMatchRegionMatchBeginMF_01288120 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01288113 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01288121 edam:has_input signature:MF_01288 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZNF9MF_01288110, 1, (STRLEN(?templateMotifCigarQ8ZNF9MF_01288110) - STRLEN(REPLACE(?templateMotifCigarQ8ZNF9MF_01288110, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionQ8ZNF9111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZNF9MF_01288112, 1, (STRLEN(?targetMotifMatchCigarQ8ZNF9MF_01288112) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZNF9MF_01288112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZNF9MF_01288112, 1, (STRLEN(?targetMotifMatchCigarQ8ZNF9MF_01288112) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZNF9MF_01288112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) .
BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_01288113) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs2t124) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01288a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch129 faldo:location ?templateMotifSequenceMatchRegionQ8ZNF9130 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZNF9132 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZNF9MF_01288125 .
?templateMotifSequenceMatchRegionQ8ZNF9130 faldo:begin ?templateMotifSequenceMatchBeginQ8ZNF9131 .
?templateMotifSequenceMatchBeginQ8ZNF9131 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZNF9126 ;
faldo:reference isoform:Q8ZNF9-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZNF9132 edam:has_input signature:MF_01288 ;
rdf:type edam:operation_0300 .
?targetMotifMatch133 faldo:location ?targetMotifMatchRegionMatch134 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01288136 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZNF9MF_01288127 .
?targetMotifMatchRegionMatch134 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01288135 .
?targetMotifMatchRegionMatchBeginMF_01288135 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01288128 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01288136 edam:has_input signature:MF_01288 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZNF9MF_01288125, 1, (STRLEN(?templateMotifCigarQ8ZNF9MF_01288125) - STRLEN(REPLACE(?templateMotifCigarQ8ZNF9MF_01288125, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionQ8ZNF9126) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZNF9MF_01288127, 1, (STRLEN(?targetMotifMatchCigarQ8ZNF9MF_01288127) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZNF9MF_01288127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZNF9MF_01288127, 1, (STRLEN(?targetMotifMatchCigarQ8ZNF9MF_01288127) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZNF9MF_01288127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), '')))), '[^-]', ''))) AS ?step2138) .
BIND(((?step2138 + ?targetMotifMatchRegionMatchBeginPositionMF_01288128) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs2t139) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01288a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch144 faldo:location ?templateMotifSequenceMatchRegionQ8ZNF9145 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZNF9147 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZNF9MF_01288140 .
?templateMotifSequenceMatchRegionQ8ZNF9145 faldo:begin ?templateMotifSequenceMatchBeginQ8ZNF9146 .
?templateMotifSequenceMatchBeginQ8ZNF9146 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZNF9141 ;
faldo:reference isoform:Q8ZNF9-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZNF9147 edam:has_input signature:MF_01288 ;
rdf:type edam:operation_0300 .
?targetMotifMatch148 faldo:location ?targetMotifMatchRegionMatch149 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01288151 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZNF9MF_01288142 .
?targetMotifMatchRegionMatch149 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01288150 .
?targetMotifMatchRegionMatchBeginMF_01288150 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01288143 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01288151 edam:has_input signature:MF_01288 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZNF9MF_01288140, 1, (STRLEN(?templateMotifCigarQ8ZNF9MF_01288140) - STRLEN(REPLACE(?templateMotifCigarQ8ZNF9MF_01288140, CONCAT('^(?:-*[^-]){', STR(((349 - ?templateMotifSequenceMatchBeginPositionQ8ZNF9141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZNF9MF_01288142, 1, (STRLEN(?targetMotifMatchCigarQ8ZNF9MF_01288142) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZNF9MF_01288142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZNF9MF_01288142, 1, (STRLEN(?targetMotifMatchCigarQ8ZNF9MF_01288142) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZNF9MF_01288142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), '')))), '[^-]', ''))) AS ?step2153) .
BIND(((?step2153 + ?targetMotifMatchRegionMatchBeginPositionMF_01288143) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs2t154) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01288a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch159 faldo:location ?templateMotifSequenceMatchRegionQ8ZNF9160 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZNF9162 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZNF9MF_01288155 .
?templateMotifSequenceMatchRegionQ8ZNF9160 faldo:begin ?templateMotifSequenceMatchBeginQ8ZNF9161 .
?templateMotifSequenceMatchBeginQ8ZNF9161 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZNF9156 ;
faldo:reference isoform:Q8ZNF9-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZNF9162 edam:has_input signature:MF_01288 ;
rdf:type edam:operation_0300 .
?targetMotifMatch163 faldo:location ?targetMotifMatchRegionMatch164 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01288166 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZNF9MF_01288157 .
?targetMotifMatchRegionMatch164 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01288165 .
?targetMotifMatchRegionMatchBeginMF_01288165 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01288158 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01288166 edam:has_input signature:MF_01288 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZNF9MF_01288155, 1, (STRLEN(?templateMotifCigarQ8ZNF9MF_01288155) - STRLEN(REPLACE(?templateMotifCigarQ8ZNF9MF_01288155, CONCAT('^(?:-*[^-]){', STR(((302 - ?templateMotifSequenceMatchBeginPositionQ8ZNF9156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZNF9MF_01288157, 1, (STRLEN(?targetMotifMatchCigarQ8ZNF9MF_01288157) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZNF9MF_01288157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZNF9MF_01288157, 1, (STRLEN(?targetMotifMatchCigarQ8ZNF9MF_01288157) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZNF9MF_01288157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) .
BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_01288158) - 1) AS ?thisPositionOn65) .
BIND(?thisPositionOn65 AS ?thisPositionOn66) .
BIND(?this AS ?pfs2t169) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse64) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01288a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch174 faldo:location ?templateMotifSequenceMatchRegionQ8ZNF9175 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZNF9177 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8ZNF9MF_01288170 .
?templateMotifSequenceMatchRegionQ8ZNF9175 faldo:begin ?templateMotifSequenceMatchBeginQ8ZNF9176 .
?templateMotifSequenceMatchBeginQ8ZNF9176 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZNF9171 ;
faldo:reference isoform:Q8ZNF9-1 .
?templateMotifSequenceProfileAlignmentOperationQ8ZNF9177 edam:has_input signature:MF_01288 ;
rdf:type edam:operation_0300 .
?targetMotifMatch178 faldo:location ?targetMotifMatchRegionMatch179 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01288181 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8ZNF9MF_01288172 .
?targetMotifMatchRegionMatch179 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01288180 .
?targetMotifMatchRegionMatchBeginMF_01288180 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01288173 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01288181 edam:has_input signature:MF_01288 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZNF9MF_01288170, 1, (STRLEN(?templateMotifCigarQ8ZNF9MF_01288170) - STRLEN(REPLACE(?templateMotifCigarQ8ZNF9MF_01288170, CONCAT('^(?:-*[^-]){', STR(((349 - ?templateMotifSequenceMatchBeginPositionQ8ZNF9171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZNF9MF_01288172, 1, (STRLEN(?targetMotifMatchCigarQ8ZNF9MF_01288172) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZNF9MF_01288172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZNF9MF_01288172, 1, (STRLEN(?targetMotifMatchCigarQ8ZNF9MF_01288172) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZNF9MF_01288172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), '')))), '[^-]', ''))) AS ?step2183) .
BIND(((?step2183 + ?targetMotifMatchRegionMatchBeginPositionMF_01288173) - 1) AS ?thisPositionOn71) .
BIND(?thisPositionOn71 AS ?thisPositionOn72) .
BIND(?this AS ?pfs2t184) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse70) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01288a68')) AS ?annotation68) .
BIND(?this AS ?pfs67) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag185) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag185, ?UNBOUND_VARIABLE) AS ?case6) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(?this AS ?case7) .
BIND(URI(CONCAT(STR(?this), '#MF_01288a8')) AS ?name8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(?this AS ?case9) .
BIND(URI(CONCAT(STR(?this), '#MF_01288a10')) AS ?name10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(?this AS ?case11) .
}
}
"xsd:string |
