| http://purl.uniprot.org/unirules/MF_01298#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:465371 up:source unirule:MF_01298 .
_:465372 up:source unirule:MF_01298 .
_:465373 up:source unirule:MF_01298 .
_:465374 up:fullName 'Arginine decarboxylase beta chain' ;
rdf:type up:Structured_Name .
_:465375 up:source unirule:MF_01298 .
_:465376 up:fullName 'Arginine decarboxylase alpha chain' ;
rdf:type up:Structured_Name .
_:465377 up:source unirule:MF_01298 .
_:465378 up:source unirule:MF_01298 .
_:465379 up:source unirule:MF_01298 .
_:465380 up:source unirule:MF_01298 .
_:465381 up:source unirule:MF_01298 .
_:465382 up:source unirule:MF_01298 .
_:465383 up:source unirule:MF_01298 .
_:465384 up:source unirule:MF_01298 .
_:465385 up:source unirule:MF_01298 .
_:465386 up:source unirule:MF_01298 .
_:465387 up:source unirule:MF_01298 .
_:465388 up:source unirule:MF_01298 .
_:465389 up:source unirule:MF_01298 .
_:465390 up:source unirule:MF_01298 .
_:465391 up:source unirule:MF_01298 .
_:465392 up:source unirule:MF_01298 .
_:465393 up:source unirule:MF_01298 .
_:465394 up:source unirule:MF_01298 .
_:465395 up:source unirule:MF_01298 .
_:465396 up:source unirule:MF_01298 .
_:465397 up:source unirule:MF_01298 .
_:465398 up:source unirule:MF_01298 .
_:465399 up:source unirule:MF_01298 .
_:465400 up:source unirule:MF_01298 .
_:465401 up:source unirule:MF_01298 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation11 ;
up:classifiedWith GO:0006527 ,
GO:0006596 ,
GO:0008792 ,
keyword:210 ,
keyword:456 ,
keyword:620 ,
keyword:670 ,
keyword:68 ,
keyword:704 ,
keyword:865 ;
up:component ?namedpart2 ,
?namedpart3 ;
up:precursor "true"^^xsd:boolean ;
up:recommendedName ?name0 .
?name0 up:ecName '4.1.1.19' ;
up:fullName 'Arginine decarboxylase proenzyme' ;
up:shortName 'ADC' ,
'ArgDC' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Pyruvoyl-dependent arginine decarboxylase' ;
rdf:type up:Structured_Name .
?namedpart2 up:recommendedName _:465374 .
?namedpart3 up:recommendedName _:465376 .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Specifically catalyzes the decarboxylation of L-arginine to agmatine. Has no S-adenosylmethionine decarboxylase (AdoMetDC) activity.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:15361 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 pyruvoyl group covalently per subunit.' .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Amine and polyamine biosynthesis; agmatine biosynthesis; agmatine from L-arginine: step 1/1.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Heterooctamer of four alpha and four beta chains arranged as a tetramer of alpha/beta heterodimers.' .
?annotation10 a up:PTM_Annotation ;
rdfs:comment 'Is synthesized initially as an inactive proenzyme. Formation of the active enzyme involves a self-maturation process in which the active site pyruvoyl group is generated from an internal serine residue via an autocatalytic post-translational modification. Two non-identical subunits are generated from the proenzyme in this reaction, and the pyruvate is formed at the N-terminus of the alpha chain, which is derived from the carboxyl end of the proenzyme. The post-translation cleavage follows an unusual pathway, termed non-hydrolytic serinolysis, in which the side chain hydroxyl group of the serine supplies its oxygen atom to form the C-terminus of the beta chain, while the remainder of the serine residue undergoes an oxidative deamination to produce ammonia and the pyruvoyl group blocking the N-terminus of the alpha chain.' .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Arginine decarboxylase beta chain' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Arginine decarboxylase alpha chain' .
?pfsb20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Schiff-base intermediate with substrate; via pyruvic acid' .
?pfsb26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor; for processing activity' .
?pfsb32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor; for catalytic activity' .
?pfsb38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Cleavage (non-hydrolytic); by autolysis' .
?pfsb44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Pyruvic acid (Ser); by autocatalysis' .
?pfsb50 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
_:465402 a rdf:Statement ;
up:attribution _:465371 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:465403 a rdf:Statement ;
up:attribution _:465372 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:465404 a rdf:Statement ;
up:attribution _:465373 ;
rdf:subject ?this ;
rdf:predicate up:precursor ;
rdf:object "true"^^xsd:boolean .
_:465405 a rdf:Statement ;
up:attribution _:465375 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart2 .
_:465406 a rdf:Statement ;
up:attribution _:465377 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart3 .
_:465407 a rdf:Statement ;
up:attribution _:465378 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:465408 a rdf:Statement ;
up:attribution _:465379 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:465409 a rdf:Statement ;
up:attribution _:465380 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:465410 a rdf:Statement ;
up:attribution _:465381 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:465411 a rdf:Statement ;
up:attribution _:465382 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:465412 a rdf:Statement ;
up:attribution _:465383 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:465413 a rdf:Statement ;
up:attribution _:465384 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:465414 a rdf:Statement ;
up:attribution _:465385 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:68 .
_:465415 a rdf:Statement ;
up:attribution _:465386 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:210 .
_:465416 a rdf:Statement ;
up:attribution _:465387 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:465417 a rdf:Statement ;
up:attribution _:465388 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:620 .
_:465418 a rdf:Statement ;
up:attribution _:465389 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:670 .
_:465419 a rdf:Statement ;
up:attribution _:465390 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:704 .
_:465420 a rdf:Statement ;
up:attribution _:465391 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:865 .
_:465421 a rdf:Statement ;
up:attribution _:465392 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008792 .
_:465422 a rdf:Statement ;
up:attribution _:465393 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006527 .
_:465423 a rdf:Statement ;
up:attribution _:465394 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006596 .
_:465424 a rdf:Statement ;
up:source unirule:MF_01298 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:465425 a rdf:Statement ;
up:attribution _:465395 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:465426 a rdf:Statement ;
up:source unirule:MF_01298 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:465427 a rdf:Statement ;
up:attribution _:465396 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:465428 a rdf:Statement ;
up:source unirule:MF_01298 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:465429 a rdf:Statement ;
up:attribution _:465397 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:465430 a rdf:Statement ;
up:source unirule:MF_01298 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:465431 a rdf:Statement ;
up:attribution _:465398 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:465432 a rdf:Statement ;
up:source unirule:MF_01298 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:465433 a rdf:Statement ;
up:attribution _:465399 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:465434 a rdf:Statement ;
up:source unirule:MF_01298 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:465435 a rdf:Statement ;
up:attribution _:465400 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:465436 a rdf:Statement ;
up:source unirule:MF_01298 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:465437 a rdf:Statement ;
up:attribution _:465401 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01298
#Rule MF_01298 Created by:? on:2009-01-16 Modified by:Catherine Rivoire on:2025-09-18
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01298 .
?thisOrganism rdfs:subClassOf+ taxon:28889 .
BIND(URI(CONCAT(STR(?this), '#MF_01298a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01298a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01298a2')) AS ?namedpart2) .
BIND(URI(CONCAT(STR(?this), '#MF_01298a3')) AS ?namedpart3) .
BIND(URI(CONCAT(STR(?this), '#MF_01298a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01298a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01298a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01298a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01298a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01298a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01298a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch58 faldo:location ?templateMotifSequenceMatchRegionQ9UWU159 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UWU161 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UWU1MF_0129854 .
?templateMotifSequenceMatchRegionQ9UWU159 faldo:begin ?templateMotifSequenceMatchBeginQ9UWU160 .
?templateMotifSequenceMatchBeginQ9UWU160 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UWU155 ;
faldo:reference isoform:Q9UWU1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UWU161 edam:has_input signature:MF_01298 ;
rdf:type edam:operation_0300 .
?targetMotifMatch62 faldo:location ?targetMotifMatchRegionMatch63 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0129865 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UWU1MF_0129856 .
?targetMotifMatchRegionMatch63 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0129864 .
?targetMotifMatchRegionMatchBeginMF_0129864 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0129857 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0129865 edam:has_input signature:MF_01298 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UWU1MF_0129854, 1, (STRLEN(?templateMotifCigarQ9UWU1MF_0129854) - STRLEN(REPLACE(?templateMotifCigarQ9UWU1MF_0129854, CONCAT('^(?:-*[^-]){', STR(((81 - ?templateMotifSequenceMatchBeginPositionQ9UWU155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UWU1MF_0129856, 1, (STRLEN(?targetMotifMatchCigarQ9UWU1MF_0129856) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UWU1MF_0129856, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UWU1MF_0129856, 1, (STRLEN(?targetMotifMatchCigarQ9UWU1MF_0129856) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UWU1MF_0129856, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), '')))), '[^-]', ''))) AS ?step267) .
BIND(((?step267 + ?targetMotifMatchRegionMatchBeginPositionMF_0129857) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((BOUND(?thisPositionOn16) && BOUND(?thisPositionOn17))) .
BIND(URI(CONCAT(STR(?this), '#MF_01298a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch73 faldo:location ?templateMotifSequenceMatchRegionQ9UWU174 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UWU176 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UWU1MF_0129869 .
?templateMotifSequenceMatchRegionQ9UWU174 faldo:begin ?templateMotifSequenceMatchBeginQ9UWU175 .
?templateMotifSequenceMatchBeginQ9UWU175 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UWU170 ;
faldo:reference isoform:Q9UWU1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UWU176 edam:has_input signature:MF_01298 ;
rdf:type edam:operation_0300 .
?targetMotifMatch77 faldo:location ?targetMotifMatchRegionMatch78 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0129880 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UWU1MF_0129871 .
?targetMotifMatchRegionMatch78 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0129879 .
?targetMotifMatchRegionMatchBeginMF_0129879 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0129872 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0129880 edam:has_input signature:MF_01298 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UWU1MF_0129869, 1, (STRLEN(?templateMotifCigarQ9UWU1MF_0129869) - STRLEN(REPLACE(?templateMotifCigarQ9UWU1MF_0129869, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionQ9UWU170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UWU1MF_0129871, 1, (STRLEN(?targetMotifMatchCigarQ9UWU1MF_0129871) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UWU1MF_0129871, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UWU1MF_0129871, 1, (STRLEN(?targetMotifMatchCigarQ9UWU1MF_0129871) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UWU1MF_0129871, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), '')))), '[^-]', ''))) AS ?step282) .
BIND(((?step282 + ?targetMotifMatchRegionMatchBeginPositionMF_0129872) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) .
FILTER ((BOUND(?thisPositionOn22) && BOUND(?thisPositionOn23))) .
BIND(URI(CONCAT(STR(?this), '#MF_01298a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch88 faldo:location ?templateMotifSequenceMatchRegionQ9UWU189 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UWU191 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UWU1MF_0129884 .
?templateMotifSequenceMatchRegionQ9UWU189 faldo:begin ?templateMotifSequenceMatchBeginQ9UWU190 .
?templateMotifSequenceMatchBeginQ9UWU190 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UWU185 ;
faldo:reference isoform:Q9UWU1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UWU191 edam:has_input signature:MF_01298 ;
rdf:type edam:operation_0300 .
?targetMotifMatch92 faldo:location ?targetMotifMatchRegionMatch93 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0129895 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UWU1MF_0129886 .
?targetMotifMatchRegionMatch93 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0129894 .
?targetMotifMatchRegionMatchBeginMF_0129894 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0129887 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0129895 edam:has_input signature:MF_01298 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UWU1MF_0129884, 1, (STRLEN(?templateMotifCigarQ9UWU1MF_0129884) - STRLEN(REPLACE(?templateMotifCigarQ9UWU1MF_0129884, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionQ9UWU185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UWU1MF_0129886, 1, (STRLEN(?targetMotifMatchCigarQ9UWU1MF_0129886) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UWU1MF_0129886, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UWU1MF_0129886, 1, (STRLEN(?targetMotifMatchCigarQ9UWU1MF_0129886) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UWU1MF_0129886, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) .
BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0129887) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01298a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch103 faldo:location ?templateMotifSequenceMatchRegionQ9UWU1104 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UWU1106 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UWU1MF_0129899 .
?templateMotifSequenceMatchRegionQ9UWU1104 faldo:begin ?templateMotifSequenceMatchBeginQ9UWU1105 .
?templateMotifSequenceMatchBeginQ9UWU1105 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UWU1100 ;
faldo:reference isoform:Q9UWU1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UWU1106 edam:has_input signature:MF_01298 ;
rdf:type edam:operation_0300 .
?targetMotifMatch107 faldo:location ?targetMotifMatchRegionMatch108 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01298110 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UWU1MF_01298101 .
?targetMotifMatchRegionMatch108 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01298109 .
?targetMotifMatchRegionMatchBeginMF_01298109 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01298102 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01298110 edam:has_input signature:MF_01298 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UWU1MF_0129899, 1, (STRLEN(?templateMotifCigarQ9UWU1MF_0129899) - STRLEN(REPLACE(?templateMotifCigarQ9UWU1MF_0129899, CONCAT('^(?:-*[^-]){', STR(((87 - ?templateMotifSequenceMatchBeginPositionQ9UWU1100) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UWU1MF_01298101, 1, (STRLEN(?targetMotifMatchCigarQ9UWU1MF_01298101) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UWU1MF_01298101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UWU1MF_01298101, 1, (STRLEN(?targetMotifMatchCigarQ9UWU1MF_01298101) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UWU1MF_01298101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) .
BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_01298102) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01298a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch118 faldo:location ?templateMotifSequenceMatchRegionQ9UWU1119 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UWU1121 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UWU1MF_01298114 .
?templateMotifSequenceMatchRegionQ9UWU1119 faldo:begin ?templateMotifSequenceMatchBeginQ9UWU1120 .
?templateMotifSequenceMatchBeginQ9UWU1120 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UWU1115 ;
faldo:reference isoform:Q9UWU1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UWU1121 edam:has_input signature:MF_01298 ;
rdf:type edam:operation_0300 .
?targetMotifMatch122 faldo:location ?targetMotifMatchRegionMatch123 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01298125 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UWU1MF_01298116 .
?targetMotifMatchRegionMatch123 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01298124 .
?targetMotifMatchRegionMatchBeginMF_01298124 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01298117 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01298125 edam:has_input signature:MF_01298 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UWU1MF_01298114, 1, (STRLEN(?templateMotifCigarQ9UWU1MF_01298114) - STRLEN(REPLACE(?templateMotifCigarQ9UWU1MF_01298114, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionQ9UWU1115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UWU1MF_01298116, 1, (STRLEN(?targetMotifMatchCigarQ9UWU1MF_01298116) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UWU1MF_01298116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UWU1MF_01298116, 1, (STRLEN(?targetMotifMatchCigarQ9UWU1MF_01298116) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UWU1MF_01298116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) .
BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_01298117) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01298a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionQ9UWU1134 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UWU1136 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UWU1MF_01298129 .
?templateMotifSequenceMatchRegionQ9UWU1134 faldo:begin ?templateMotifSequenceMatchBeginQ9UWU1135 .
?templateMotifSequenceMatchBeginQ9UWU1135 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UWU1130 ;
faldo:reference isoform:Q9UWU1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UWU1136 edam:has_input signature:MF_01298 ;
rdf:type edam:operation_0300 .
?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01298140 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UWU1MF_01298131 .
?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01298139 .
?targetMotifMatchRegionMatchBeginMF_01298139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01298132 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01298140 edam:has_input signature:MF_01298 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UWU1MF_01298129, 1, (STRLEN(?templateMotifCigarQ9UWU1MF_01298129) - STRLEN(REPLACE(?templateMotifCigarQ9UWU1MF_01298129, CONCAT('^(?:-*[^-]){', STR(((81 - ?templateMotifSequenceMatchBeginPositionQ9UWU1130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UWU1MF_01298131, 1, (STRLEN(?targetMotifMatchCigarQ9UWU1MF_01298131) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UWU1MF_01298131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UWU1MF_01298131, 1, (STRLEN(?targetMotifMatchCigarQ9UWU1MF_01298131) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UWU1MF_01298131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_01298132) - 1) AS ?thisPositionOn46) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UWU1MF_01298129, 1, (STRLEN(?templateMotifCigarQ9UWU1MF_01298129) - STRLEN(REPLACE(?templateMotifCigarQ9UWU1MF_01298129, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionQ9UWU1130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UWU1MF_01298131, 1, (STRLEN(?targetMotifMatchCigarQ9UWU1MF_01298131) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UWU1MF_01298131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UWU1MF_01298131, 1, (STRLEN(?targetMotifMatchCigarQ9UWU1MF_01298131) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UWU1MF_01298131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) .
BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_01298132) - 1) AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t145) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, (?thisPositionOn47 - ?thisPositionOn46)) = 'ES')) .
BIND(URI(CONCAT(STR(?this), '#MF_01298a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch150 faldo:location ?templateMotifSequenceMatchRegionQ9UWU1151 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UWU1153 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UWU1MF_01298146 .
?templateMotifSequenceMatchRegionQ9UWU1151 faldo:begin ?templateMotifSequenceMatchBeginQ9UWU1152 .
?templateMotifSequenceMatchBeginQ9UWU1152 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UWU1147 ;
faldo:reference isoform:Q9UWU1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UWU1153 edam:has_input signature:MF_01298 ;
rdf:type edam:operation_0300 .
?targetMotifMatch154 faldo:location ?targetMotifMatchRegionMatch155 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01298157 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UWU1MF_01298148 .
?targetMotifMatchRegionMatch155 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01298156 .
?targetMotifMatchRegionMatchBeginMF_01298156 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01298149 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01298157 edam:has_input signature:MF_01298 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UWU1MF_01298146, 1, (STRLEN(?templateMotifCigarQ9UWU1MF_01298146) - STRLEN(REPLACE(?templateMotifCigarQ9UWU1MF_01298146, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionQ9UWU1147) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UWU1MF_01298148, 1, (STRLEN(?targetMotifMatchCigarQ9UWU1MF_01298148) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UWU1MF_01298148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UWU1MF_01298148, 1, (STRLEN(?targetMotifMatchCigarQ9UWU1MF_01298148) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UWU1MF_01298148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) .
BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_01298149) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t160) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01298a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
}
"xsd:string |
