| http://purl.uniprot.org/unirules/MF_01425#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:515932 up:source unirule:MF_01425 .
_:515933 up:source unirule:MF_01425 .
_:515934 up:source unirule:MF_01425 .
_:515935 up:source unirule:MF_01425 .
_:515936 up:source unirule:MF_01425 .
_:515937 up:source unirule:MF_01425 .
_:515938 up:source unirule:MF_01425 .
_:515939 up:source unirule:MF_01425 .
_:515940 up:source unirule:MF_01425 .
_:515941 up:source unirule:MF_01425 .
_:515942 up:source unirule:MF_01425 .
_:515943 up:source unirule:MF_01425 .
_:515944 up:source unirule:MF_01425 .
_:515945 up:source unirule:MF_01425 .
_:515946 up:source unirule:MF_01425 .
_:515947 up:source unirule:MF_01425 .
_:515948 up:source unirule:MF_01425 .
_:515949 up:source unirule:MF_01425 .
_:515950 up:source unirule:MF_01425 .
_:515951 up:source unirule:MF_01425 .
_:515952 up:source unirule:MF_01425 .
_:515953 up:source unirule:MF_01425 .
_:515954 up:source unirule:MF_01425 .
_:515955 up:source unirule:MF_01425 .
_:515956 up:source unirule:MF_01425 .
_:515957 up:source unirule:MF_01425 .
_:515958 up:source unirule:MF_01425 .
_:515959 up:source unirule:MF_01425 .
_:515960 up:source unirule:MF_01425 .
_:515961 up:source unirule:MF_01425 .
_:515962 up:source unirule:MF_01425 .
_:515963 up:source unirule:MF_01425 .
_:515964 up:source unirule:MF_01425 .
_:515965 up:source unirule:MF_01425 .
_:515966 up:source unirule:MF_01425 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ,
?annotation9 ,
?annotation10 ,
?annotation12 ;
up:classifiedWith GO:0005381 ,
GO:0005385 ,
GO:0005886 ,
GO:0015086 ,
GO:0015297 ,
GO:0034755 ,
GO:0070574 ,
GO:0071577 ,
keyword:1003 ,
keyword:1133 ,
keyword:406 ,
keyword:408 ,
keyword:410 ,
keyword:472 ,
keyword:479 ,
keyword:812 ,
keyword:862 ,
keyword:864 ,
keyword:997 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Cation-efflux pump FieF' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'fieF' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Divalent metal cation transporter which exports Zn(2+), Cd(2+) and possibly Fe(2+). May be involved in zinc and iron detoxification by efflux.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity .
?annotation7 up:activity ?activity8 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity8 up:catalyticActivity .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation10 a up:Subcellular_Location_Annotation .
?annotation10li11 up:cellularComponent .
?annotation12 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. FieF subfamily.' .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:29105 .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:29105 .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf chebi:29105 .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand38 rdfs:subClassOf chebi:29105 .
?sam41 up:classifiedWith keyword:1133 ,
keyword:472 ,
keyword:812 .
?transmembrane42 faldo:begin ?transmembraneb43 ;
faldo:end ?transmembranee44 .
?transmembraneb43 faldo:position ?transmembranebp45 .
?transmembranee44 faldo:position ?transmembraneep46 .
?keyword47 up:range ?transmembrane42 .
?keyword48 up:range ?transmembrane42 .
?keyword49 up:range ?transmembrane42 .
_:515967 a rdf:Statement ;
up:attribution _:515932 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:515968 a rdf:Statement ;
up:attribution _:515933 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:515969 a rdf:Statement ;
up:attribution _:515934 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:515970 a rdf:Statement ;
up:attribution _:515935 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:515971 a rdf:Statement ;
up:attribution _:515936 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:515972 a rdf:Statement ;
up:attribution _:515937 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:515973 a rdf:Statement ;
up:attribution _:515938 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:515974 a rdf:Statement ;
up:attribution _:515939 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:515975 a rdf:Statement ;
up:attribution _:515940 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:515976 a rdf:Statement ;
up:attribution _:515941 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:515977 a rdf:Statement ;
up:attribution _:515942 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:515978 a rdf:Statement ;
up:attribution _:515943 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:406 .
_:515979 a rdf:Statement ;
up:attribution _:515944 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:515980 a rdf:Statement ;
up:attribution _:515945 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:410 .
_:515981 a rdf:Statement ;
up:attribution _:515946 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:515982 a rdf:Statement ;
up:attribution _:515947 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:515983 a rdf:Statement ;
up:attribution _:515948 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:515984 a rdf:Statement ;
up:attribution _:515949 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:515985 a rdf:Statement ;
up:attribution _:515950 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:515986 a rdf:Statement ;
up:attribution _:515951 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:864 .
_:515987 a rdf:Statement ;
up:attribution _:515952 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015297 .
_:515988 a rdf:Statement ;
up:attribution _:515953 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015086 .
_:515989 a rdf:Statement ;
up:attribution _:515954 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005381 .
_:515990 a rdf:Statement ;
up:attribution _:515955 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005385 .
_:515991 a rdf:Statement ;
up:attribution _:515956 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070574 .
_:515992 a rdf:Statement ;
up:attribution _:515957 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0034755 .
_:515993 a rdf:Statement ;
up:attribution _:515958 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0071577 .
_:515994 a rdf:Statement ;
up:attribution _:515959 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:515995 a rdf:Statement ;
up:source unirule:MF_01425 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:515996 a rdf:Statement ;
up:attribution _:515960 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:515997 a rdf:Statement ;
up:source unirule:MF_01425 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:515998 a rdf:Statement ;
up:attribution _:515961 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:515999 a rdf:Statement ;
up:source unirule:MF_01425 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:516000 a rdf:Statement ;
up:attribution _:515962 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:516001 a rdf:Statement ;
up:source unirule:MF_01425 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:516002 a rdf:Statement ;
up:attribution _:515963 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:516003 a rdf:Statement ;
up:attribution _:515964 ;
rdf:subject ?sam41 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:516004 a rdf:Statement ;
up:attribution _:515965 ;
rdf:subject ?sam41 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:516005 a rdf:Statement ;
up:attribution _:515966 ;
rdf:subject ?sam41 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01425
#Rule MF_01425 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01425 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_01425a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01425a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01425a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01425a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01425a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01425a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01425a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01425a12')) AS ?annotation12) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch54 faldo:location ?templateMotifSequenceMatchRegionP6938055 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6938057 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69380MF_0142550 .
?templateMotifSequenceMatchRegionP6938055 faldo:begin ?templateMotifSequenceMatchBeginP6938056 .
?templateMotifSequenceMatchBeginP6938056 faldo:position ?templateMotifSequenceMatchBeginPositionP6938051 ;
faldo:reference isoform:P69380-1 .
?templateMotifSequenceProfileAlignmentOperationP6938057 edam:has_input signature:MF_01425 ;
rdf:type edam:operation_0300 .
?targetMotifMatch58 faldo:location ?targetMotifMatchRegionMatch59 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0142561 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69380MF_0142552 .
?targetMotifMatchRegionMatch59 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0142560 .
?targetMotifMatchRegionMatchBeginMF_0142560 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0142553 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0142561 edam:has_input signature:MF_01425 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69380MF_0142550, 1, (STRLEN(?templateMotifCigarP69380MF_0142550) - STRLEN(REPLACE(?templateMotifCigarP69380MF_0142550, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionP6938051) + 1)), '}'), '')))), '[a-z]', '')) AS ?step162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69380MF_0142552, 1, (STRLEN(?targetMotifMatchCigarP69380MF_0142552) - STRLEN(REPLACE(?targetMotifMatchCigarP69380MF_0142552, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69380MF_0142552, 1, (STRLEN(?targetMotifMatchCigarP69380MF_0142552) - STRLEN(REPLACE(?targetMotifMatchCigarP69380MF_0142552, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), '')))), '[^-]', ''))) AS ?step263) .
BIND(((?step263 + ?targetMotifMatchRegionMatchBeginPositionMF_0142553) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01425a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch69 faldo:location ?templateMotifSequenceMatchRegionP6938070 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6938072 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69380MF_0142565 .
?templateMotifSequenceMatchRegionP6938070 faldo:begin ?templateMotifSequenceMatchBeginP6938071 .
?templateMotifSequenceMatchBeginP6938071 faldo:position ?templateMotifSequenceMatchBeginPositionP6938066 ;
faldo:reference isoform:P69380-1 .
?templateMotifSequenceProfileAlignmentOperationP6938072 edam:has_input signature:MF_01425 ;
rdf:type edam:operation_0300 .
?targetMotifMatch73 faldo:location ?targetMotifMatchRegionMatch74 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0142576 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69380MF_0142567 .
?targetMotifMatchRegionMatch74 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0142575 .
?targetMotifMatchRegionMatchBeginMF_0142575 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0142568 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0142576 edam:has_input signature:MF_01425 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69380MF_0142565, 1, (STRLEN(?templateMotifCigarP69380MF_0142565) - STRLEN(REPLACE(?templateMotifCigarP69380MF_0142565, CONCAT('^(?:-*[^-]){', STR(((49 - ?templateMotifSequenceMatchBeginPositionP6938066) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69380MF_0142567, 1, (STRLEN(?targetMotifMatchCigarP69380MF_0142567) - STRLEN(REPLACE(?targetMotifMatchCigarP69380MF_0142567, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69380MF_0142567, 1, (STRLEN(?targetMotifMatchCigarP69380MF_0142567) - STRLEN(REPLACE(?targetMotifMatchCigarP69380MF_0142567, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) .
BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0142568) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01425a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch84 faldo:location ?templateMotifSequenceMatchRegionP6938085 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6938087 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69380MF_0142580 .
?templateMotifSequenceMatchRegionP6938085 faldo:begin ?templateMotifSequenceMatchBeginP6938086 .
?templateMotifSequenceMatchBeginP6938086 faldo:position ?templateMotifSequenceMatchBeginPositionP6938081 ;
faldo:reference isoform:P69380-1 .
?templateMotifSequenceProfileAlignmentOperationP6938087 edam:has_input signature:MF_01425 ;
rdf:type edam:operation_0300 .
?targetMotifMatch88 faldo:location ?targetMotifMatchRegionMatch89 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0142591 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69380MF_0142582 .
?targetMotifMatchRegionMatch89 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0142590 .
?targetMotifMatchRegionMatchBeginMF_0142590 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0142583 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0142591 edam:has_input signature:MF_01425 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69380MF_0142580, 1, (STRLEN(?templateMotifCigarP69380MF_0142580) - STRLEN(REPLACE(?templateMotifCigarP69380MF_0142580, CONCAT('^(?:-*[^-]){', STR(((153 - ?templateMotifSequenceMatchBeginPositionP6938081) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69380MF_0142582, 1, (STRLEN(?targetMotifMatchCigarP69380MF_0142582) - STRLEN(REPLACE(?targetMotifMatchCigarP69380MF_0142582, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69380MF_0142582, 1, (STRLEN(?targetMotifMatchCigarP69380MF_0142582) - STRLEN(REPLACE(?targetMotifMatchCigarP69380MF_0142582, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) .
BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0142583) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01425a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch99 faldo:location ?templateMotifSequenceMatchRegionP69380100 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69380102 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69380MF_0142595 .
?templateMotifSequenceMatchRegionP69380100 faldo:begin ?templateMotifSequenceMatchBeginP69380101 .
?templateMotifSequenceMatchBeginP69380101 faldo:position ?templateMotifSequenceMatchBeginPositionP6938096 ;
faldo:reference isoform:P69380-1 .
?templateMotifSequenceProfileAlignmentOperationP69380102 edam:has_input signature:MF_01425 ;
rdf:type edam:operation_0300 .
?targetMotifMatch103 faldo:location ?targetMotifMatchRegionMatch104 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01425106 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69380MF_0142597 .
?targetMotifMatchRegionMatch104 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01425105 .
?targetMotifMatchRegionMatchBeginMF_01425105 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0142598 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01425106 edam:has_input signature:MF_01425 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69380MF_0142595, 1, (STRLEN(?templateMotifCigarP69380MF_0142595) - STRLEN(REPLACE(?templateMotifCigarP69380MF_0142595, CONCAT('^(?:-*[^-]){', STR(((157 - ?templateMotifSequenceMatchBeginPositionP6938096) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69380MF_0142597, 1, (STRLEN(?targetMotifMatchCigarP69380MF_0142597) - STRLEN(REPLACE(?targetMotifMatchCigarP69380MF_0142597, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69380MF_0142597, 1, (STRLEN(?targetMotifMatchCigarP69380MF_0142597) - STRLEN(REPLACE(?targetMotifMatchCigarP69380MF_0142597, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0142598) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01425a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:annotation ?samtransmembrane110 ;
up:sequence ?thisSequence .
?samtransmembrane110 up:range ?samtransmembraner111 ;
rdf:type up:Transmembrane_Annotation .
?samtransmembraner111 faldo:begin ?samtransmembraneb112 ;
faldo:end ?samtransmembranee113 .
?samtransmembraneb112 faldo:position ?samtransmembranebp114 ;
faldo:reference ?thisSequence .
?samtransmembranee113 faldo:position ?samtransmembraneep115 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam41) .
}
BIND(URI(CONCAT(STR(?this), '#MF_01425a47')) AS ?keyword47) .
BIND(URI(CONCAT(STR(?this), '#MF_01425a48')) AS ?keyword48) .
BIND(URI(CONCAT(STR(?this), '#MF_01425a49')) AS ?keyword49) .
}
"xsd:string |
