| http://purl.uniprot.org/unirules/MF_01492#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:541328 up:source unirule:MF_01492 .
_:541329 up:source unirule:MF_01492 .
_:541330 up:source unirule:MF_01492 .
_:541331 up:source unirule:MF_01492 .
_:541332 up:source unirule:MF_01492 .
_:541333 up:source unirule:MF_01492 .
_:541334 up:source unirule:MF_01492 .
_:541335 up:source unirule:MF_01492 .
_:541336 up:source unirule:MF_01492 .
_:541337 up:source unirule:MF_01492 .
_:541338 up:source unirule:MF_01492 .
_:541339 up:source unirule:MF_01492 .
_:541340 up:source unirule:MF_01492 .
_:541341 up:source unirule:MF_01492 .
_:541342 up:source unirule:MF_01492 .
_:541343 up:source unirule:MF_01492 .
_:541344 up:source unirule:MF_01492 .
_:541345 up:source unirule:MF_01492 .
_:541346 up:source unirule:MF_01492 .
_:541347 up:source unirule:MF_01492 .
_:541348 up:source unirule:MF_01492 .
_:541349 up:source unirule:MF_01492 .
_:541350 up:source unirule:MF_01492 .
_:541351 up:source unirule:MF_01492 .
_:541352 up:source unirule:MF_01492 .
_:541353 up:source unirule:MF_01492 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0004534 ,
GO:0005737 ,
GO:0006401 ,
keyword:269 ,
keyword:378 ,
keyword:540 ,
keyword:694 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.1.-.-' ;
up:fullName 'Ribonuclease J' ;
up:shortName 'RNase J' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'rnj' .
?annotation2 a up:Function_Annotation ;
rdfs:comment "An RNase that has 5'-3' exonuclease activity. May be involved in RNA degradation." .
?annotation3 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation4 a up:Subcellular_Location_Annotation .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. Archaeal RNase J subfamily.' .
?case7 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?pfs8 up:annotation ?annotation9 ,
?annotation15 ,
?annotation21 ,
?annotation27 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:29105 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:29105 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:29105 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:29105 .
?pfs33 up:annotation ?annotation34 ,
?annotation40 ,
?annotation46 ,
?annotation52 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:29105 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:29105 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:29105 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:29105 .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf ?molecule63 .
?molecule63 rdfs:label 'substrate' .
_:541354 a rdf:Statement ;
up:attribution _:541328 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:541355 a rdf:Statement ;
up:attribution _:541329 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:541356 a rdf:Statement ;
up:attribution _:541330 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:541357 a rdf:Statement ;
up:attribution _:541331 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:541358 a rdf:Statement ;
up:attribution _:541332 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:541359 a rdf:Statement ;
up:attribution _:541333 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:541360 a rdf:Statement ;
up:attribution _:541334 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:541361 a rdf:Statement ;
up:attribution _:541335 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:269 .
_:541362 a rdf:Statement ;
up:attribution _:541336 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:541363 a rdf:Statement ;
up:attribution _:541337 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:540 .
_:541364 a rdf:Statement ;
up:attribution _:541338 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:541365 a rdf:Statement ;
up:attribution _:541339 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004534 .
_:541366 a rdf:Statement ;
up:attribution _:541340 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006401 .
_:541367 a rdf:Statement ;
up:attribution _:541341 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:541368 a rdf:Statement ;
up:attribution _:541342 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:541369 a rdf:Statement ;
up:attribution _:541343 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:541370 a rdf:Statement ;
up:attribution _:541344 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:541371 a rdf:Statement ;
up:source unirule:MF_01492 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:541372 a rdf:Statement ;
up:attribution _:541345 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:541373 a rdf:Statement ;
up:source unirule:MF_01492 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:541374 a rdf:Statement ;
up:attribution _:541346 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:541375 a rdf:Statement ;
up:source unirule:MF_01492 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:541376 a rdf:Statement ;
up:attribution _:541347 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:541377 a rdf:Statement ;
up:source unirule:MF_01492 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:541378 a rdf:Statement ;
up:attribution _:541348 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:541379 a rdf:Statement ;
up:source unirule:MF_01492 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:541380 a rdf:Statement ;
up:attribution _:541349 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:541381 a rdf:Statement ;
up:source unirule:MF_01492 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:541382 a rdf:Statement ;
up:attribution _:541350 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:541383 a rdf:Statement ;
up:source unirule:MF_01492 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:541384 a rdf:Statement ;
up:attribution _:541351 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:541385 a rdf:Statement ;
up:source unirule:MF_01492 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:541386 a rdf:Statement ;
up:attribution _:541352 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:541387 a rdf:Statement ;
up:source unirule:MF_01492 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:541388 a rdf:Statement ;
up:attribution _:541353 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01492
#Rule MF_01492 Created by:? on:2014-05-09 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01492 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_01492a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01492a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01492a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01492a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01492a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch70 faldo:location ?templateMotifSequenceMatchRegionQ9V07671 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V07673 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V076MF_0149266 .
?templateMotifSequenceMatchRegionQ9V07671 faldo:begin ?templateMotifSequenceMatchBeginQ9V07672 .
?templateMotifSequenceMatchBeginQ9V07672 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V07667 ;
faldo:reference isoform:Q9V076-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V07673 edam:has_input signature:MF_01492 ;
rdf:type edam:operation_0300 .
?targetMotifMatch74 faldo:location ?targetMotifMatchRegionMatch75 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0149277 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V076MF_0149268 .
?targetMotifMatchRegionMatch75 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0149276 .
?targetMotifMatchRegionMatchBeginMF_0149276 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0149269 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0149277 edam:has_input signature:MF_01492 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_2) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V076MF_0149266, 1, (STRLEN(?templateMotifCigarQ9V076MF_0149266) - STRLEN(REPLACE(?templateMotifCigarQ9V076MF_0149266, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionQ9V07667) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V076MF_0149268, 1, (STRLEN(?targetMotifMatchCigarQ9V076MF_0149268) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V076MF_0149268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V076MF_0149268, 1, (STRLEN(?targetMotifMatchCigarQ9V076MF_0149268) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V076MF_0149268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0149269) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V076MF_0149266, 1, (STRLEN(?templateMotifCigarQ9V076MF_0149266) - STRLEN(REPLACE(?templateMotifCigarQ9V076MF_0149266, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionQ9V07667) + 1)), '}'), '')))), '[a-z]', '')) AS ?step181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V076MF_0149268, 1, (STRLEN(?targetMotifMatchCigarQ9V076MF_0149268) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V076MF_0149268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V076MF_0149268, 1, (STRLEN(?targetMotifMatchCigarQ9V076MF_0149268) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V076MF_0149268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), '')))), '[^-]', ''))) AS ?step282) .
BIND(((?step282 + ?targetMotifMatchRegionMatchBeginPositionMF_0149269) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V076MF_0149266, 1, (STRLEN(?templateMotifCigarQ9V076MF_0149266) - STRLEN(REPLACE(?templateMotifCigarQ9V076MF_0149266, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionQ9V07667) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V076MF_0149268, 1, (STRLEN(?targetMotifMatchCigarQ9V076MF_0149268) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V076MF_0149268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V076MF_0149268, 1, (STRLEN(?targetMotifMatchCigarQ9V076MF_0149268) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V076MF_0149268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) .
BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0149269) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1))) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V076MF_0149266, 1, (STRLEN(?templateMotifCigarQ9V076MF_0149266) - STRLEN(REPLACE(?templateMotifCigarQ9V076MF_0149266, CONCAT('^(?:-*[^-]){', STR(((410 - ?templateMotifSequenceMatchBeginPositionQ9V07667) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V076MF_0149268, 1, (STRLEN(?targetMotifMatchCigarQ9V076MF_0149268) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V076MF_0149268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V076MF_0149268, 1, (STRLEN(?targetMotifMatchCigarQ9V076MF_0149268) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V076MF_0149268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) .
BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0149269) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'H')) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch94 faldo:location ?templateMotifSequenceMatchRegionQ9V07695 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V07697 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V076MF_0149290 .
?templateMotifSequenceMatchRegionQ9V07695 faldo:begin ?templateMotifSequenceMatchBeginQ9V07696 .
?templateMotifSequenceMatchBeginQ9V07696 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V07691 ;
faldo:reference isoform:Q9V076-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V07697 edam:has_input signature:MF_01492 ;
rdf:type edam:operation_0300 .
?targetMotifMatch98 faldo:location ?targetMotifMatchRegionMatch99 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01492101 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V076MF_0149292 .
?targetMotifMatchRegionMatch99 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01492100 .
?targetMotifMatchRegionMatchBeginMF_01492100 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0149293 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01492101 edam:has_input signature:MF_01492 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V076MF_0149290, 1, (STRLEN(?templateMotifCigarQ9V076MF_0149290) - STRLEN(REPLACE(?templateMotifCigarQ9V076MF_0149290, CONCAT('^(?:-*[^-]){', STR(((84 - ?templateMotifSequenceMatchBeginPositionQ9V07691) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V076MF_0149292, 1, (STRLEN(?targetMotifMatchCigarQ9V076MF_0149292) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V076MF_0149292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V076MF_0149292, 1, (STRLEN(?targetMotifMatchCigarQ9V076MF_0149292) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V076MF_0149292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0149293) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs2t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V076MF_0149290, 1, (STRLEN(?templateMotifCigarQ9V076MF_0149290) - STRLEN(REPLACE(?templateMotifCigarQ9V076MF_0149290, CONCAT('^(?:-*[^-]){', STR(((86 - ?templateMotifSequenceMatchBeginPositionQ9V07691) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V076MF_0149292, 1, (STRLEN(?targetMotifMatchCigarQ9V076MF_0149292) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V076MF_0149292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V076MF_0149292, 1, (STRLEN(?targetMotifMatchCigarQ9V076MF_0149292) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V076MF_0149292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0149293) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs2t107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V076MF_0149290, 1, (STRLEN(?templateMotifCigarQ9V076MF_0149290) - STRLEN(REPLACE(?templateMotifCigarQ9V076MF_0149290, CONCAT('^(?:-*[^-]){', STR(((155 - ?templateMotifSequenceMatchBeginPositionQ9V07691) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V076MF_0149292, 1, (STRLEN(?targetMotifMatchCigarQ9V076MF_0149292) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V076MF_0149292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V076MF_0149292, 1, (STRLEN(?targetMotifMatchCigarQ9V076MF_0149292) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V076MF_0149292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) .
BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0149293) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs2t110) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V076MF_0149290, 1, (STRLEN(?templateMotifCigarQ9V076MF_0149290) - STRLEN(REPLACE(?templateMotifCigarQ9V076MF_0149290, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionQ9V07691) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V076MF_0149292, 1, (STRLEN(?targetMotifMatchCigarQ9V076MF_0149292) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V076MF_0149292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V076MF_0149292, 1, (STRLEN(?targetMotifMatchCigarQ9V076MF_0149292) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V076MF_0149292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) .
BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_0149293) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs2t113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1))) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch118 faldo:location ?templateMotifSequenceMatchRegionQ9V076119 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V076121 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9V076MF_01492114 .
?templateMotifSequenceMatchRegionQ9V076119 faldo:begin ?templateMotifSequenceMatchBeginQ9V076120 .
?templateMotifSequenceMatchBeginQ9V076120 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V076115 ;
faldo:reference isoform:Q9V076-1 .
?templateMotifSequenceProfileAlignmentOperationQ9V076121 edam:has_input signature:MF_01492 ;
rdf:type edam:operation_0300 .
?targetMotifMatch122 faldo:location ?targetMotifMatchRegionMatch123 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01492125 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9V076MF_01492116 .
?targetMotifMatchRegionMatch123 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01492124 .
?targetMotifMatchRegionMatchBeginMF_01492124 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01492117 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01492125 edam:has_input signature:MF_01492 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V076MF_01492114, 1, (STRLEN(?templateMotifCigarQ9V076MF_01492114) - STRLEN(REPLACE(?templateMotifCigarQ9V076MF_01492114, CONCAT('^(?:-*[^-]){', STR(((384 - ?templateMotifSequenceMatchBeginPositionQ9V076115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V076MF_01492116, 1, (STRLEN(?targetMotifMatchCigarQ9V076MF_01492116) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V076MF_01492116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V076MF_01492116, 1, (STRLEN(?targetMotifMatchCigarQ9V076MF_01492116) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V076MF_01492116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) .
BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_01492117) - 1) AS ?thisPositionOn64) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V076MF_01492114, 1, (STRLEN(?templateMotifCigarQ9V076MF_01492114) - STRLEN(REPLACE(?templateMotifCigarQ9V076MF_01492114, CONCAT('^(?:-*[^-]){', STR(((388 - ?templateMotifSequenceMatchBeginPositionQ9V076115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V076MF_01492116, 1, (STRLEN(?targetMotifMatchCigarQ9V076MF_01492116) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V076MF_01492116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V076MF_01492116, 1, (STRLEN(?targetMotifMatchCigarQ9V076MF_01492116) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V076MF_01492116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) .
BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_01492117) - 1) AS ?thisPositionOn65) .
BIND(?this AS ?pfs3t130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse61) .
FILTER (REGEX('H[VTA]S[GS]H', SUBSTR(?thisSequenceValue, ?thisPositionOn64, (?thisPositionOn65 - ?thisPositionOn64)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01492a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag131) .
}
BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagFTGRP_2)), ?caseWithTag131, ?UNBOUND_VARIABLE) AS ?case7) .
}
"xsd:string |
