| http://purl.uniprot.org/unirules/MF_01574#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:568812 up:source unirule:MF_01574 .
_:568813 up:source unirule:MF_01574 .
_:568814 up:source unirule:MF_01574 .
_:568815 up:source unirule:MF_01574 .
_:568816 up:source unirule:MF_01574 .
_:568817 up:source unirule:MF_01574 .
_:568818 up:source unirule:MF_01574 .
_:568819 up:source unirule:MF_01574 .
_:568820 up:source unirule:MF_01574 .
_:568821 up:source unirule:MF_01574 .
_:568822 up:source unirule:MF_01574 .
_:568823 up:source unirule:MF_01574 .
_:568824 up:source unirule:MF_01574 .
_:568825 up:source unirule:MF_01574 .
_:568826 up:source unirule:MF_01574 .
_:568827 up:source unirule:MF_01574 .
_:568828 up:source unirule:MF_01574 .
_:568829 up:source unirule:MF_01574 .
_:568830 up:source unirule:MF_01574 .
_:568831 up:source unirule:MF_01574 .
_:568832 up:source unirule:MF_01574 .
_:568833 up:source unirule:MF_01574 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0005990 ,
GO:0033920 ,
keyword:326 ,
keyword:378 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.2.1.85' ;
up:fullName '6-phospho-beta-galactosidase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Beta-D-phosphogalactoside galactohydrolase' ;
up:shortName 'PGALase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'P-beta-Gal' ;
up:shortName 'PBG' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'lacG' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate metabolism; lactose degradation; D-galactose 6-phosphate and beta-D-glucose from lactose 6-phosphate: step 1/1.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the glycosyl hydrolase 1 family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:91004 .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf chebi:91004 .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand38 rdfs:subClassOf chebi:91004 .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf chebi:91004 .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
up:ligand ?ligand52 ;
rdf:type up:Binding_Site_Annotation .
?pfsb50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand52 rdfs:subClassOf chebi:91004 .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
up:ligand ?ligand59 ;
rdf:type up:Binding_Site_Annotation .
?pfsb57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?ligand59 rdfs:subClassOf chebi:91004 .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
up:ligand ?ligand66 ;
rdf:type up:Binding_Site_Annotation .
?pfsb64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?ligand66 rdfs:subClassOf chebi:91004 .
?pfs69 up:annotation ?annotation70 .
?annotation70 faldo:begin ?pfsb71 ;
faldo:end ?pfse72 ;
up:ligand ?ligand73 ;
rdf:type up:Binding_Site_Annotation .
?pfsb71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfse72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?ligand73 rdfs:subClassOf chebi:91004 .
?pfs76 up:annotation ?annotation77 .
?annotation77 faldo:begin ?pfsb78 ;
faldo:end ?pfse79 ;
up:ligand ?ligand80 ;
rdf:type up:Binding_Site_Annotation .
?pfsb78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?pfse79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?ligand80 rdfs:subClassOf chebi:91004 .
_:568834 a rdf:Statement ;
up:attribution _:568812 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:568835 a rdf:Statement ;
up:attribution _:568813 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:568836 a rdf:Statement ;
up:attribution _:568814 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:568837 a rdf:Statement ;
up:attribution _:568815 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:568838 a rdf:Statement ;
up:attribution _:568816 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:568839 a rdf:Statement ;
up:attribution _:568817 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:568840 a rdf:Statement ;
up:attribution _:568818 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:568841 a rdf:Statement ;
up:attribution _:568819 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:326 .
_:568842 a rdf:Statement ;
up:attribution _:568820 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:568843 a rdf:Statement ;
up:attribution _:568821 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0033920 .
_:568844 a rdf:Statement ;
up:attribution _:568822 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005990 .
_:568845 a rdf:Statement ;
up:source unirule:MF_01574 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:568846 a rdf:Statement ;
up:attribution _:568823 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:568847 a rdf:Statement ;
up:source unirule:MF_01574 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:568848 a rdf:Statement ;
up:attribution _:568824 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:568849 a rdf:Statement ;
up:source unirule:MF_01574 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:568850 a rdf:Statement ;
up:attribution _:568825 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:568851 a rdf:Statement ;
up:source unirule:MF_01574 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:568852 a rdf:Statement ;
up:attribution _:568826 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:568853 a rdf:Statement ;
up:source unirule:MF_01574 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:568854 a rdf:Statement ;
up:attribution _:568827 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:568855 a rdf:Statement ;
up:source unirule:MF_01574 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:568856 a rdf:Statement ;
up:attribution _:568828 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:568857 a rdf:Statement ;
up:source unirule:MF_01574 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:568858 a rdf:Statement ;
up:attribution _:568829 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:568859 a rdf:Statement ;
up:source unirule:MF_01574 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:568860 a rdf:Statement ;
up:attribution _:568830 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:568861 a rdf:Statement ;
up:source unirule:MF_01574 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:568862 a rdf:Statement ;
up:attribution _:568831 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:568863 a rdf:Statement ;
up:source unirule:MF_01574 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:568864 a rdf:Statement ;
up:attribution _:568832 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:568865 a rdf:Statement ;
up:source unirule:MF_01574 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:568866 a rdf:Statement ;
up:attribution _:568833 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01574
#Rule MF_01574 Created by:? on:2006-11-02 Modified by:Edouard de Castro on:2024-09-03
VALUES ?supertaxon83 {taxon:1239 taxon:32066}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01574 .
?thisOrganism rdfs:subClassOf+ ?supertaxon83 .
BIND(URI(CONCAT(STR(?this), '#MF_01574a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01574a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01574a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01574a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01574a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01574a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch88 faldo:location ?templateMotifSequenceMatchRegionP1154689 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1154691 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11546MF_0157484 .
?templateMotifSequenceMatchRegionP1154689 faldo:begin ?templateMotifSequenceMatchBeginP1154690 .
?templateMotifSequenceMatchBeginP1154690 faldo:position ?templateMotifSequenceMatchBeginPositionP1154685 ;
faldo:reference isoform:P11546-1 .
?templateMotifSequenceProfileAlignmentOperationP1154691 edam:has_input signature:MF_01574 ;
rdf:type edam:operation_0300 .
?targetMotifMatch92 faldo:location ?targetMotifMatchRegionMatch93 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0157495 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11546MF_0157486 .
?targetMotifMatchRegionMatch93 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0157494 .
?targetMotifMatchRegionMatchBeginMF_0157494 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0157487 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0157495 edam:has_input signature:MF_01574 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11546MF_0157484, 1, (STRLEN(?templateMotifCigarP11546MF_0157484) - STRLEN(REPLACE(?templateMotifCigarP11546MF_0157484, CONCAT('^(?:-*[^-]){', STR(((160 - ?templateMotifSequenceMatchBeginPositionP1154685) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11546MF_0157486, 1, (STRLEN(?targetMotifMatchCigarP11546MF_0157486) - STRLEN(REPLACE(?targetMotifMatchCigarP11546MF_0157486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11546MF_0157486, 1, (STRLEN(?targetMotifMatchCigarP11546MF_0157486) - STRLEN(REPLACE(?targetMotifMatchCigarP11546MF_0157486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) .
BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0157487) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01574a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch103 faldo:location ?templateMotifSequenceMatchRegionP11546104 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11546106 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11546MF_0157499 .
?templateMotifSequenceMatchRegionP11546104 faldo:begin ?templateMotifSequenceMatchBeginP11546105 .
?templateMotifSequenceMatchBeginP11546105 faldo:position ?templateMotifSequenceMatchBeginPositionP11546100 ;
faldo:reference isoform:P11546-1 .
?templateMotifSequenceProfileAlignmentOperationP11546106 edam:has_input signature:MF_01574 ;
rdf:type edam:operation_0300 .
?targetMotifMatch107 faldo:location ?targetMotifMatchRegionMatch108 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01574110 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11546MF_01574101 .
?targetMotifMatchRegionMatch108 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01574109 .
?targetMotifMatchRegionMatchBeginMF_01574109 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01574102 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01574110 edam:has_input signature:MF_01574 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11546MF_0157499, 1, (STRLEN(?templateMotifCigarP11546MF_0157499) - STRLEN(REPLACE(?templateMotifCigarP11546MF_0157499, CONCAT('^(?:-*[^-]){', STR(((375 - ?templateMotifSequenceMatchBeginPositionP11546100) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11546MF_01574101, 1, (STRLEN(?targetMotifMatchCigarP11546MF_01574101) - STRLEN(REPLACE(?targetMotifMatchCigarP11546MF_01574101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11546MF_01574101, 1, (STRLEN(?targetMotifMatchCigarP11546MF_01574101) - STRLEN(REPLACE(?targetMotifMatchCigarP11546MF_01574101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) .
BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_01574102) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01574a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch118 faldo:location ?templateMotifSequenceMatchRegionP11546119 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11546121 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11546MF_01574114 .
?templateMotifSequenceMatchRegionP11546119 faldo:begin ?templateMotifSequenceMatchBeginP11546120 .
?templateMotifSequenceMatchBeginP11546120 faldo:position ?templateMotifSequenceMatchBeginPositionP11546115 ;
faldo:reference isoform:P11546-1 .
?templateMotifSequenceProfileAlignmentOperationP11546121 edam:has_input signature:MF_01574 ;
rdf:type edam:operation_0300 .
?targetMotifMatch122 faldo:location ?targetMotifMatchRegionMatch123 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01574125 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11546MF_01574116 .
?targetMotifMatchRegionMatch123 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01574124 .
?targetMotifMatchRegionMatchBeginMF_01574124 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01574117 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01574125 edam:has_input signature:MF_01574 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11546MF_01574114, 1, (STRLEN(?templateMotifCigarP11546MF_01574114) - STRLEN(REPLACE(?templateMotifCigarP11546MF_01574114, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionP11546115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11546MF_01574116, 1, (STRLEN(?targetMotifMatchCigarP11546MF_01574116) - STRLEN(REPLACE(?targetMotifMatchCigarP11546MF_01574116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11546MF_01574116, 1, (STRLEN(?targetMotifMatchCigarP11546MF_01574116) - STRLEN(REPLACE(?targetMotifMatchCigarP11546MF_01574116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) .
BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_01574117) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01574a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionP11546134 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11546136 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11546MF_01574129 .
?templateMotifSequenceMatchRegionP11546134 faldo:begin ?templateMotifSequenceMatchBeginP11546135 .
?templateMotifSequenceMatchBeginP11546135 faldo:position ?templateMotifSequenceMatchBeginPositionP11546130 ;
faldo:reference isoform:P11546-1 .
?templateMotifSequenceProfileAlignmentOperationP11546136 edam:has_input signature:MF_01574 ;
rdf:type edam:operation_0300 .
?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01574140 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11546MF_01574131 .
?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01574139 .
?targetMotifMatchRegionMatchBeginMF_01574139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01574132 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01574140 edam:has_input signature:MF_01574 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11546MF_01574129, 1, (STRLEN(?templateMotifCigarP11546MF_01574129) - STRLEN(REPLACE(?templateMotifCigarP11546MF_01574129, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionP11546130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11546MF_01574131, 1, (STRLEN(?targetMotifMatchCigarP11546MF_01574131) - STRLEN(REPLACE(?targetMotifMatchCigarP11546MF_01574131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11546MF_01574131, 1, (STRLEN(?targetMotifMatchCigarP11546MF_01574131) - STRLEN(REPLACE(?targetMotifMatchCigarP11546MF_01574131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_01574132) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01574a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionP11546149 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11546151 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11546MF_01574144 .
?templateMotifSequenceMatchRegionP11546149 faldo:begin ?templateMotifSequenceMatchBeginP11546150 .
?templateMotifSequenceMatchBeginP11546150 faldo:position ?templateMotifSequenceMatchBeginPositionP11546145 ;
faldo:reference isoform:P11546-1 .
?templateMotifSequenceProfileAlignmentOperationP11546151 edam:has_input signature:MF_01574 ;
rdf:type edam:operation_0300 .
?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01574155 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11546MF_01574146 .
?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01574154 .
?targetMotifMatchRegionMatchBeginMF_01574154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01574147 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01574155 edam:has_input signature:MF_01574 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11546MF_01574144, 1, (STRLEN(?templateMotifCigarP11546MF_01574144) - STRLEN(REPLACE(?templateMotifCigarP11546MF_01574144, CONCAT('^(?:-*[^-]){', STR(((159 - ?templateMotifSequenceMatchBeginPositionP11546145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11546MF_01574146, 1, (STRLEN(?targetMotifMatchCigarP11546MF_01574146) - STRLEN(REPLACE(?targetMotifMatchCigarP11546MF_01574146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11546MF_01574146, 1, (STRLEN(?targetMotifMatchCigarP11546MF_01574146) - STRLEN(REPLACE(?targetMotifMatchCigarP11546MF_01574146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) .
BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_01574147) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t158) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01574a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch163 faldo:location ?templateMotifSequenceMatchRegionP11546164 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11546166 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11546MF_01574159 .
?templateMotifSequenceMatchRegionP11546164 faldo:begin ?templateMotifSequenceMatchBeginP11546165 .
?templateMotifSequenceMatchBeginP11546165 faldo:position ?templateMotifSequenceMatchBeginPositionP11546160 ;
faldo:reference isoform:P11546-1 .
?templateMotifSequenceProfileAlignmentOperationP11546166 edam:has_input signature:MF_01574 ;
rdf:type edam:operation_0300 .
?targetMotifMatch167 faldo:location ?targetMotifMatchRegionMatch168 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01574170 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11546MF_01574161 .
?targetMotifMatchRegionMatch168 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01574169 .
?targetMotifMatchRegionMatchBeginMF_01574169 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01574162 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01574170 edam:has_input signature:MF_01574 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11546MF_01574159, 1, (STRLEN(?templateMotifCigarP11546MF_01574159) - STRLEN(REPLACE(?templateMotifCigarP11546MF_01574159, CONCAT('^(?:-*[^-]){', STR(((160 - ?templateMotifSequenceMatchBeginPositionP11546160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11546MF_01574161, 1, (STRLEN(?targetMotifMatchCigarP11546MF_01574161) - STRLEN(REPLACE(?targetMotifMatchCigarP11546MF_01574161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11546MF_01574161, 1, (STRLEN(?targetMotifMatchCigarP11546MF_01574161) - STRLEN(REPLACE(?targetMotifMatchCigarP11546MF_01574161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) .
BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_01574162) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t173) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01574a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch178 faldo:location ?templateMotifSequenceMatchRegionP11546179 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11546181 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11546MF_01574174 .
?templateMotifSequenceMatchRegionP11546179 faldo:begin ?templateMotifSequenceMatchBeginP11546180 .
?templateMotifSequenceMatchBeginP11546180 faldo:position ?templateMotifSequenceMatchBeginPositionP11546175 ;
faldo:reference isoform:P11546-1 .
?templateMotifSequenceProfileAlignmentOperationP11546181 edam:has_input signature:MF_01574 ;
rdf:type edam:operation_0300 .
?targetMotifMatch182 faldo:location ?targetMotifMatchRegionMatch183 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01574185 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11546MF_01574176 .
?targetMotifMatchRegionMatch183 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01574184 .
?targetMotifMatchRegionMatchBeginMF_01574184 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01574177 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01574185 edam:has_input signature:MF_01574 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11546MF_01574174, 1, (STRLEN(?templateMotifCigarP11546MF_01574174) - STRLEN(REPLACE(?templateMotifCigarP11546MF_01574174, CONCAT('^(?:-*[^-]){', STR(((297 - ?templateMotifSequenceMatchBeginPositionP11546175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11546MF_01574176, 1, (STRLEN(?targetMotifMatchCigarP11546MF_01574176) - STRLEN(REPLACE(?targetMotifMatchCigarP11546MF_01574176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11546MF_01574176, 1, (STRLEN(?targetMotifMatchCigarP11546MF_01574176) - STRLEN(REPLACE(?targetMotifMatchCigarP11546MF_01574176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), '')))), '[^-]', ''))) AS ?step2187) .
BIND(((?step2187 + ?targetMotifMatchRegionMatchBeginPositionMF_01574177) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t188) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) .
FILTER (REGEX('[ND]', SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01574a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch193 faldo:location ?templateMotifSequenceMatchRegionP11546194 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11546196 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11546MF_01574189 .
?templateMotifSequenceMatchRegionP11546194 faldo:begin ?templateMotifSequenceMatchBeginP11546195 .
?templateMotifSequenceMatchBeginP11546195 faldo:position ?templateMotifSequenceMatchBeginPositionP11546190 ;
faldo:reference isoform:P11546-1 .
?templateMotifSequenceProfileAlignmentOperationP11546196 edam:has_input signature:MF_01574 ;
rdf:type edam:operation_0300 .
?targetMotifMatch197 faldo:location ?targetMotifMatchRegionMatch198 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01574200 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11546MF_01574191 .
?targetMotifMatchRegionMatch198 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01574199 .
?targetMotifMatchRegionMatchBeginMF_01574199 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01574192 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01574200 edam:has_input signature:MF_01574 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11546MF_01574189, 1, (STRLEN(?templateMotifCigarP11546MF_01574189) - STRLEN(REPLACE(?templateMotifCigarP11546MF_01574189, CONCAT('^(?:-*[^-]){', STR(((428 - ?templateMotifSequenceMatchBeginPositionP11546190) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1201) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11546MF_01574191, 1, (STRLEN(?targetMotifMatchCigarP11546MF_01574191) - STRLEN(REPLACE(?targetMotifMatchCigarP11546MF_01574191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11546MF_01574191, 1, (STRLEN(?targetMotifMatchCigarP11546MF_01574191) - STRLEN(REPLACE(?targetMotifMatchCigarP11546MF_01574191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), '')))), '[^-]', ''))) AS ?step2202) .
BIND(((?step2202 + ?targetMotifMatchRegionMatchBeginPositionMF_01574192) - 1) AS ?thisPositionOn60) .
BIND(?thisPositionOn60 AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t203) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01574a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch208 faldo:location ?templateMotifSequenceMatchRegionP11546209 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11546211 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11546MF_01574204 .
?templateMotifSequenceMatchRegionP11546209 faldo:begin ?templateMotifSequenceMatchBeginP11546210 .
?templateMotifSequenceMatchBeginP11546210 faldo:position ?templateMotifSequenceMatchBeginPositionP11546205 ;
faldo:reference isoform:P11546-1 .
?templateMotifSequenceProfileAlignmentOperationP11546211 edam:has_input signature:MF_01574 ;
rdf:type edam:operation_0300 .
?targetMotifMatch212 faldo:location ?targetMotifMatchRegionMatch213 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01574215 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11546MF_01574206 .
?targetMotifMatchRegionMatch213 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01574214 .
?targetMotifMatchRegionMatchBeginMF_01574214 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01574207 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01574215 edam:has_input signature:MF_01574 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11546MF_01574204, 1, (STRLEN(?templateMotifCigarP11546MF_01574204) - STRLEN(REPLACE(?templateMotifCigarP11546MF_01574204, CONCAT('^(?:-*[^-]){', STR(((429 - ?templateMotifSequenceMatchBeginPositionP11546205) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1216) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11546MF_01574206, 1, (STRLEN(?targetMotifMatchCigarP11546MF_01574206) - STRLEN(REPLACE(?targetMotifMatchCigarP11546MF_01574206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11546MF_01574206, 1, (STRLEN(?targetMotifMatchCigarP11546MF_01574206) - STRLEN(REPLACE(?targetMotifMatchCigarP11546MF_01574206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), '')))), '[^-]', ''))) AS ?step2217) .
BIND(((?step2217 + ?targetMotifMatchRegionMatchBeginPositionMF_01574207) - 1) AS ?thisPositionOn67) .
BIND(?thisPositionOn67 AS ?thisPositionOn68) .
BIND(?this AS ?pfs1t218) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse65) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'W')) .
BIND(URI(CONCAT(STR(?this), '#MF_01574a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch223 faldo:location ?templateMotifSequenceMatchRegionP11546224 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11546226 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11546MF_01574219 .
?templateMotifSequenceMatchRegionP11546224 faldo:begin ?templateMotifSequenceMatchBeginP11546225 .
?templateMotifSequenceMatchBeginP11546225 faldo:position ?templateMotifSequenceMatchBeginPositionP11546220 ;
faldo:reference isoform:P11546-1 .
?templateMotifSequenceProfileAlignmentOperationP11546226 edam:has_input signature:MF_01574 ;
rdf:type edam:operation_0300 .
?targetMotifMatch227 faldo:location ?targetMotifMatchRegionMatch228 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01574230 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11546MF_01574221 .
?targetMotifMatchRegionMatch228 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01574229 .
?targetMotifMatchRegionMatchBeginMF_01574229 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01574222 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01574230 edam:has_input signature:MF_01574 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11546MF_01574219, 1, (STRLEN(?templateMotifCigarP11546MF_01574219) - STRLEN(REPLACE(?templateMotifCigarP11546MF_01574219, CONCAT('^(?:-*[^-]){', STR(((435 - ?templateMotifSequenceMatchBeginPositionP11546220) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1231) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11546MF_01574221, 1, (STRLEN(?targetMotifMatchCigarP11546MF_01574221) - STRLEN(REPLACE(?targetMotifMatchCigarP11546MF_01574221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11546MF_01574221, 1, (STRLEN(?targetMotifMatchCigarP11546MF_01574221) - STRLEN(REPLACE(?targetMotifMatchCigarP11546MF_01574221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), '')))), '[^-]', ''))) AS ?step2232) .
BIND(((?step2232 + ?targetMotifMatchRegionMatchBeginPositionMF_01574222) - 1) AS ?thisPositionOn74) .
BIND(?thisPositionOn74 AS ?thisPositionOn75) .
BIND(?this AS ?pfs1t233) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse72) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01574a70')) AS ?annotation70) .
BIND(?this AS ?pfs69) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch238 faldo:location ?templateMotifSequenceMatchRegionP11546239 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11546241 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11546MF_01574234 .
?templateMotifSequenceMatchRegionP11546239 faldo:begin ?templateMotifSequenceMatchBeginP11546240 .
?templateMotifSequenceMatchBeginP11546240 faldo:position ?templateMotifSequenceMatchBeginPositionP11546235 ;
faldo:reference isoform:P11546-1 .
?templateMotifSequenceProfileAlignmentOperationP11546241 edam:has_input signature:MF_01574 ;
rdf:type edam:operation_0300 .
?targetMotifMatch242 faldo:location ?targetMotifMatchRegionMatch243 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01574245 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11546MF_01574236 .
?targetMotifMatchRegionMatch243 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01574244 .
?targetMotifMatchRegionMatchBeginMF_01574244 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01574237 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01574245 edam:has_input signature:MF_01574 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11546MF_01574234, 1, (STRLEN(?templateMotifCigarP11546MF_01574234) - STRLEN(REPLACE(?templateMotifCigarP11546MF_01574234, CONCAT('^(?:-*[^-]){', STR(((437 - ?templateMotifSequenceMatchBeginPositionP11546235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1246) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11546MF_01574236, 1, (STRLEN(?targetMotifMatchCigarP11546MF_01574236) - STRLEN(REPLACE(?targetMotifMatchCigarP11546MF_01574236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11546MF_01574236, 1, (STRLEN(?targetMotifMatchCigarP11546MF_01574236) - STRLEN(REPLACE(?targetMotifMatchCigarP11546MF_01574236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), '')))), '[^-]', ''))) AS ?step2247) .
BIND(((?step2247 + ?targetMotifMatchRegionMatchBeginPositionMF_01574237) - 1) AS ?thisPositionOn81) .
BIND(?thisPositionOn81 AS ?thisPositionOn82) .
BIND(?this AS ?pfs1t248) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfsb78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfse79) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn81, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01574a77')) AS ?annotation77) .
BIND(?this AS ?pfs76) .
}
}
"xsd:string |
