| http://purl.uniprot.org/unirules/MF_01578#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:570232 up:source unirule:MF_01578 .
_:570233 up:source unirule:MF_01578 .
_:570234 up:source unirule:MF_01578 .
_:570235 up:source unirule:MF_01578 .
_:570236 up:source unirule:MF_01578 .
_:570237 up:source unirule:MF_01578 .
_:570238 up:source unirule:MF_01578 .
_:570239 up:source unirule:MF_01578 .
_:570240 up:source unirule:MF_01578 .
_:570241 up:source unirule:MF_01578 .
_:570242 up:source unirule:MF_01578 .
_:570243 up:source unirule:MF_01578 .
_:570244 up:source unirule:MF_01578 .
_:570245 up:source unirule:MF_01578 .
_:570246 up:source unirule:MF_01578 .
_:570247 up:source unirule:MF_01578 .
_:570248 up:source unirule:MF_01578 .
_:570249 up:source unirule:MF_01578 .
_:570250 up:source unirule:MF_01578 .
_:570251 up:source unirule:MF_01578 .
_:570252 up:source unirule:MF_01578 .
_:570253 up:source unirule:MF_01578 .
_:570254 up:source unirule:MF_01578 .
_:570255 up:source unirule:MF_01578 .
_:570256 up:source unirule:MF_01578 .
_:570257 up:source unirule:MF_01578 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation10 ,
?annotation12 ,
?annotation13 ,
?annotation14 ;
up:classifiedWith GO:0004764 ,
GO:0009423 ,
GO:0030266 ,
keyword:28 ,
keyword:520 ,
keyword:521 ,
keyword:560 ,
keyword:57 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.1.1.282' ;
up:fullName 'Quinate/shikimate dehydrogenase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'NAD-dependent shikimate 5-dehydrogenase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'ydiB' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'The actual biological function of YdiB remains unclear, nor is it known whether 3-dehydroshikimate or quinate represents the natural substrate. Catalyzes the reversible NAD-dependent reduction of both 3-dehydroshikimate (DHSA) and 3-dehydroquinate to yield shikimate (SA) and quinate, respectively. It can use both NAD or NADP for catalysis, however it has higher catalytic efficiency with NAD.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:activity ?activity9 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity9 up:catalyticActivity ;
up:enzymeClass .
?annotation10 up:activity ?activity11 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity11 up:catalyticActivity ;
up:enzymeClass .
?annotation12 a up:Pathway_Annotation ;
rdfs:comment 'Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 4/7.' .
?annotation13 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation14 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the shikimate dehydrogenase family.' .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:57540 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:57540 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:57540 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf ?molecule41 .
?molecule41 rdfs:label 'substrate' .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf ?molecule49 .
?molecule49 rdfs:label 'substrate' .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf chebi:57540 .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
up:ligand ?ligand63 ;
rdf:type up:Binding_Site_Annotation .
?pfsb61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand63 rdfs:subClassOf chebi:57540 .
_:570258 a rdf:Statement ;
up:attribution _:570232 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:570259 a rdf:Statement ;
up:attribution _:570233 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:570260 a rdf:Statement ;
up:attribution _:570234 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:570261 a rdf:Statement ;
up:attribution _:570235 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:570262 a rdf:Statement ;
up:attribution _:570236 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:570263 a rdf:Statement ;
up:attribution _:570237 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:570264 a rdf:Statement ;
up:attribution _:570238 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:570265 a rdf:Statement ;
up:attribution _:570239 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:570266 a rdf:Statement ;
up:attribution _:570240 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:570267 a rdf:Statement ;
up:attribution _:570241 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:570268 a rdf:Statement ;
up:attribution _:570242 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:570269 a rdf:Statement ;
up:attribution _:570243 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:570270 a rdf:Statement ;
up:attribution _:570244 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:57 .
_:570271 a rdf:Statement ;
up:attribution _:570245 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:570272 a rdf:Statement ;
up:attribution _:570246 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:570273 a rdf:Statement ;
up:attribution _:570247 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:570274 a rdf:Statement ;
up:attribution _:570248 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030266 .
_:570275 a rdf:Statement ;
up:attribution _:570249 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004764 .
_:570276 a rdf:Statement ;
up:attribution _:570250 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009423 .
_:570277 a rdf:Statement ;
up:source unirule:MF_01578 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:570278 a rdf:Statement ;
up:attribution _:570251 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:570279 a rdf:Statement ;
up:source unirule:MF_01578 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:570280 a rdf:Statement ;
up:attribution _:570252 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:570281 a rdf:Statement ;
up:source unirule:MF_01578 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:570282 a rdf:Statement ;
up:attribution _:570253 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:570283 a rdf:Statement ;
up:source unirule:MF_01578 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:570284 a rdf:Statement ;
up:attribution _:570254 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:570285 a rdf:Statement ;
up:source unirule:MF_01578 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:570286 a rdf:Statement ;
up:attribution _:570255 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:570287 a rdf:Statement ;
up:source unirule:MF_01578 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:570288 a rdf:Statement ;
up:attribution _:570256 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:570289 a rdf:Statement ;
up:source unirule:MF_01578 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:570290 a rdf:Statement ;
up:attribution _:570257 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01578
#Rule MF_01578 Created by:? on:2007-02-23 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01578 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_01578a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01578a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01578a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01578a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01578a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01578a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01578a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01578a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_01578a13')) AS ?annotation13) .
BIND(URI(CONCAT(STR(?this), '#MF_01578a14')) AS ?annotation14) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch70 faldo:location ?templateMotifSequenceMatchRegionP0A6D571 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D573 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6D5MF_0157866 .
?templateMotifSequenceMatchRegionP0A6D571 faldo:begin ?templateMotifSequenceMatchBeginP0A6D572 .
?templateMotifSequenceMatchBeginP0A6D572 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D567 ;
faldo:reference isoform:P0A6D5-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6D573 edam:has_input signature:MF_01578 ;
rdf:type edam:operation_0300 .
?targetMotifMatch74 faldo:location ?targetMotifMatchRegionMatch75 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0157877 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6D5MF_0157868 .
?targetMotifMatchRegionMatch75 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0157876 .
?targetMotifMatchRegionMatchBeginMF_0157876 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0157869 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0157877 edam:has_input signature:MF_01578 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D5MF_0157866, 1, (STRLEN(?templateMotifCigarP0A6D5MF_0157866) - STRLEN(REPLACE(?templateMotifCigarP0A6D5MF_0157866, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionP0A6D567) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D5MF_0157868, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_0157868) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_0157868, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D5MF_0157868, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_0157868) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_0157868, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0157869) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D5MF_0157866, 1, (STRLEN(?templateMotifCigarP0A6D5MF_0157866) - STRLEN(REPLACE(?templateMotifCigarP0A6D5MF_0157866, CONCAT('^(?:-*[^-]){', STR(((135 - ?templateMotifSequenceMatchBeginPositionP0A6D567) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D5MF_0157868, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_0157868) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_0157868, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D5MF_0157868, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_0157868) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_0157868, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0157869) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)) = 'AGGA')) .
BIND(URI(CONCAT(STR(?this), '#MF_01578a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionP0A6D588 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D590 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6D5MF_0157883 .
?templateMotifSequenceMatchRegionP0A6D588 faldo:begin ?templateMotifSequenceMatchBeginP0A6D589 .
?templateMotifSequenceMatchBeginP0A6D589 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D584 ;
faldo:reference isoform:P0A6D5-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6D590 edam:has_input signature:MF_01578 ;
rdf:type edam:operation_0300 .
?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0157894 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6D5MF_0157885 .
?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0157893 .
?targetMotifMatchRegionMatchBeginMF_0157893 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0157886 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0157894 edam:has_input signature:MF_01578 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D5MF_0157883, 1, (STRLEN(?templateMotifCigarP0A6D5MF_0157883) - STRLEN(REPLACE(?templateMotifCigarP0A6D5MF_0157883, CONCAT('^(?:-*[^-]){', STR(((155 - ?templateMotifSequenceMatchBeginPositionP0A6D584) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D5MF_0157885, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_0157885) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_0157885, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D5MF_0157885, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_0157885) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_0157885, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0157886) - 1) AS ?thisPositionOn27) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D5MF_0157883, 1, (STRLEN(?templateMotifCigarP0A6D5MF_0157883) - STRLEN(REPLACE(?templateMotifCigarP0A6D5MF_0157883, CONCAT('^(?:-*[^-]){', STR(((158 - ?templateMotifSequenceMatchBeginPositionP0A6D584) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D5MF_0157885, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_0157885) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_0157885, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D5MF_0157885, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_0157885) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_0157885, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) .
BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0157886) - 1) AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER (REGEX('NR[RK]D', SUBSTR(?thisSequenceValue, ?thisPositionOn27, (?thisPositionOn28 - ?thisPositionOn27)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01578a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch104 faldo:location ?templateMotifSequenceMatchRegionP0A6D5105 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D5107 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6D5MF_01578100 .
?templateMotifSequenceMatchRegionP0A6D5105 faldo:begin ?templateMotifSequenceMatchBeginP0A6D5106 .
?templateMotifSequenceMatchBeginP0A6D5106 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D5101 ;
faldo:reference isoform:P0A6D5-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6D5107 edam:has_input signature:MF_01578 ;
rdf:type edam:operation_0300 .
?targetMotifMatch108 faldo:location ?targetMotifMatchRegionMatch109 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01578111 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6D5MF_01578102 .
?targetMotifMatchRegionMatch109 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01578110 .
?targetMotifMatchRegionMatchBeginMF_01578110 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01578103 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01578111 edam:has_input signature:MF_01578 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D5MF_01578100, 1, (STRLEN(?templateMotifCigarP0A6D5MF_01578100) - STRLEN(REPLACE(?templateMotifCigarP0A6D5MF_01578100, CONCAT('^(?:-*[^-]){', STR(((232 - ?templateMotifSequenceMatchBeginPositionP0A6D5101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D5MF_01578102, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_01578102) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_01578102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D5MF_01578102, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_01578102) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_01578102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) .
BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_01578103) - 1) AS ?thisPositionOn34) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D5MF_01578100, 1, (STRLEN(?templateMotifCigarP0A6D5MF_01578100) - STRLEN(REPLACE(?templateMotifCigarP0A6D5MF_01578100, CONCAT('^(?:-*[^-]){', STR(((235 - ?templateMotifSequenceMatchBeginPositionP0A6D5101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D5MF_01578102, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_01578102) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_01578102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D5MF_01578102, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_01578102) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_01578102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) .
BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_01578103) - 1) AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)N', SUBSTR(?thisSequenceValue, ?thisPositionOn34, (?thisPositionOn35 - ?thisPositionOn34)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01578a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch121 faldo:location ?templateMotifSequenceMatchRegionP0A6D5122 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D5124 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6D5MF_01578117 .
?templateMotifSequenceMatchRegionP0A6D5122 faldo:begin ?templateMotifSequenceMatchBeginP0A6D5123 .
?templateMotifSequenceMatchBeginP0A6D5123 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D5118 ;
faldo:reference isoform:P0A6D5-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6D5124 edam:has_input signature:MF_01578 ;
rdf:type edam:operation_0300 .
?targetMotifMatch125 faldo:location ?targetMotifMatchRegionMatch126 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01578128 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6D5MF_01578119 .
?targetMotifMatchRegionMatch126 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01578127 .
?targetMotifMatchRegionMatchBeginMF_01578127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01578120 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01578128 edam:has_input signature:MF_01578 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D5MF_01578117, 1, (STRLEN(?templateMotifCigarP0A6D5MF_01578117) - STRLEN(REPLACE(?templateMotifCigarP0A6D5MF_01578117, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionP0A6D5118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D5MF_01578119, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_01578119) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_01578119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D5MF_01578119, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_01578119) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_01578119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) .
BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_01578120) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01578a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionP0A6D5137 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D5139 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6D5MF_01578132 .
?templateMotifSequenceMatchRegionP0A6D5137 faldo:begin ?templateMotifSequenceMatchBeginP0A6D5138 .
?templateMotifSequenceMatchBeginP0A6D5138 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D5133 ;
faldo:reference isoform:P0A6D5-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6D5139 edam:has_input signature:MF_01578 ;
rdf:type edam:operation_0300 .
?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01578143 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6D5MF_01578134 .
?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01578142 .
?targetMotifMatchRegionMatchBeginMF_01578142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01578135 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01578143 edam:has_input signature:MF_01578 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D5MF_01578132, 1, (STRLEN(?templateMotifCigarP0A6D5MF_01578132) - STRLEN(REPLACE(?templateMotifCigarP0A6D5MF_01578132, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionP0A6D5133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D5MF_01578134, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_01578134) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_01578134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D5MF_01578134, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_01578134) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_01578134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_01578135) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t146) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01578a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch151 faldo:location ?templateMotifSequenceMatchRegionP0A6D5152 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D5154 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6D5MF_01578147 .
?templateMotifSequenceMatchRegionP0A6D5152 faldo:begin ?templateMotifSequenceMatchBeginP0A6D5153 .
?templateMotifSequenceMatchBeginP0A6D5153 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D5148 ;
faldo:reference isoform:P0A6D5-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6D5154 edam:has_input signature:MF_01578 ;
rdf:type edam:operation_0300 .
?targetMotifMatch155 faldo:location ?targetMotifMatchRegionMatch156 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01578158 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6D5MF_01578149 .
?targetMotifMatchRegionMatch156 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01578157 .
?targetMotifMatchRegionMatchBeginMF_01578157 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01578150 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01578158 edam:has_input signature:MF_01578 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D5MF_01578147, 1, (STRLEN(?templateMotifCigarP0A6D5MF_01578147) - STRLEN(REPLACE(?templateMotifCigarP0A6D5MF_01578147, CONCAT('^(?:-*[^-]){', STR(((205 - ?templateMotifSequenceMatchBeginPositionP0A6D5148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D5MF_01578149, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_01578149) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_01578149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D5MF_01578149, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_01578149) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_01578149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) .
BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_01578150) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs1t161) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01578a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch166 faldo:location ?templateMotifSequenceMatchRegionP0A6D5167 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D5169 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6D5MF_01578162 .
?templateMotifSequenceMatchRegionP0A6D5167 faldo:begin ?templateMotifSequenceMatchBeginP0A6D5168 .
?templateMotifSequenceMatchBeginP0A6D5168 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D5163 ;
faldo:reference isoform:P0A6D5-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6D5169 edam:has_input signature:MF_01578 ;
rdf:type edam:operation_0300 .
?targetMotifMatch170 faldo:location ?targetMotifMatchRegionMatch171 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01578173 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6D5MF_01578164 .
?targetMotifMatchRegionMatch171 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01578172 .
?targetMotifMatchRegionMatchBeginMF_01578172 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01578165 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01578173 edam:has_input signature:MF_01578 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D5MF_01578162, 1, (STRLEN(?templateMotifCigarP0A6D5MF_01578162) - STRLEN(REPLACE(?templateMotifCigarP0A6D5MF_01578162, CONCAT('^(?:-*[^-]){', STR(((255 - ?templateMotifSequenceMatchBeginPositionP0A6D5163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D5MF_01578164, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_01578164) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_01578164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D5MF_01578164, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_01578164) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_01578164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), '')))), '[^-]', ''))) AS ?step2175) .
BIND(((?step2175 + ?targetMotifMatchRegionMatchBeginPositionMF_01578165) - 1) AS ?thisPositionOn64) .
BIND(?thisPositionOn64 AS ?thisPositionOn65) .
BIND(?this AS ?pfs1t176) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01578a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
}
"xsd:string |
