| http://purl.uniprot.org/unirules/MF_01619#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:585925 up:source unirule:MF_01619 .
_:585926 up:source unirule:MF_01619 .
_:585927 up:source unirule:MF_01619 .
_:585928 up:source unirule:MF_01619 .
_:585929 up:source unirule:MF_01619 .
_:585930 up:source unirule:MF_01619 .
_:585931 up:source unirule:MF_01619 .
_:585932 up:source unirule:MF_01619 .
_:585933 up:source unirule:MF_01619 .
_:585934 up:source unirule:MF_01619 .
_:585935 up:source unirule:MF_01619 .
_:585936 up:source unirule:MF_01619 .
_:585937 up:source unirule:MF_01619 .
_:585938 up:source unirule:MF_01619 .
_:585939 up:source unirule:MF_01619 .
_:585940 up:source unirule:MF_01619 .
_:585941 up:source unirule:MF_01619 .
_:585942 up:source unirule:MF_01619 .
_:585943 up:source unirule:MF_01619 .
_:585944 up:source unirule:MF_01619 .
_:585945 up:source unirule:MF_01619 .
?this up:annotation ?annotation2 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0004471 ,
GO:0008948 ,
keyword:479 ,
keyword:520 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.1.1.38' ;
up:fullName 'NAD-dependent malic enzyme' ;
up:shortName 'NAD-ME' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'maeA' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:18420 ,
chebi:29035 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Divalent metal cations. Prefers magnesium or manganese.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the malic enzymes family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for activity' .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf chebi:60240 .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand38 rdfs:subClassOf chebi:60240 .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf chebi:60240 .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
up:ligand ?ligand52 ;
rdf:type up:Binding_Site_Annotation .
?pfsb50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand52 rdfs:subClassOf chebi:57540 .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
up:ligand ?ligand59 ;
rdf:type up:Binding_Site_Annotation .
?pfsb57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?ligand59 rdfs:subClassOf chebi:57540 .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
up:ligand ?ligand66 ;
rdf:type up:Binding_Site_Annotation .
?pfsb64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?ligand66 rdfs:subClassOf chebi:57540 .
_:585946 a rdf:Statement ;
up:attribution _:585925 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:585947 a rdf:Statement ;
up:attribution _:585926 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:585948 a rdf:Statement ;
up:attribution _:585927 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:585949 a rdf:Statement ;
up:attribution _:585928 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:585950 a rdf:Statement ;
up:attribution _:585929 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:585951 a rdf:Statement ;
up:attribution _:585930 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:585952 a rdf:Statement ;
up:attribution _:585931 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:585953 a rdf:Statement ;
up:attribution _:585932 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:585954 a rdf:Statement ;
up:attribution _:585933 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:585955 a rdf:Statement ;
up:attribution _:585934 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:585956 a rdf:Statement ;
up:attribution _:585935 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004471 .
_:585957 a rdf:Statement ;
up:attribution _:585936 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008948 .
_:585958 a rdf:Statement ;
up:source unirule:MF_01619 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:585959 a rdf:Statement ;
up:attribution _:585937 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:585960 a rdf:Statement ;
up:source unirule:MF_01619 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:585961 a rdf:Statement ;
up:attribution _:585938 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:585962 a rdf:Statement ;
up:source unirule:MF_01619 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:585963 a rdf:Statement ;
up:attribution _:585939 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:585964 a rdf:Statement ;
up:source unirule:MF_01619 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:585965 a rdf:Statement ;
up:attribution _:585940 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:585966 a rdf:Statement ;
up:source unirule:MF_01619 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:585967 a rdf:Statement ;
up:attribution _:585941 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:585968 a rdf:Statement ;
up:source unirule:MF_01619 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:585969 a rdf:Statement ;
up:attribution _:585942 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:585970 a rdf:Statement ;
up:source unirule:MF_01619 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:585971 a rdf:Statement ;
up:attribution _:585943 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:585972 a rdf:Statement ;
up:source unirule:MF_01619 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:585973 a rdf:Statement ;
up:attribution _:585944 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:585974 a rdf:Statement ;
up:source unirule:MF_01619 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:585975 a rdf:Statement ;
up:attribution _:585945 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01619
#Rule MF_01619 Created by:? on:2005-11-16 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01619 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_01619a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01619a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01619a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01619a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01619a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01619a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch73 faldo:location ?templateMotifSequenceMatchRegionP2661674 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2661676 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP26616MF_0161969 .
?templateMotifSequenceMatchRegionP2661674 faldo:begin ?templateMotifSequenceMatchBeginP2661675 .
?templateMotifSequenceMatchBeginP2661675 faldo:position ?templateMotifSequenceMatchBeginPositionP2661670 ;
faldo:reference isoform:P26616-1 .
?templateMotifSequenceProfileAlignmentOperationP2661676 edam:has_input signature:MF_01619 ;
rdf:type edam:operation_0300 .
?targetMotifMatch77 faldo:location ?targetMotifMatchRegionMatch78 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0161980 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP26616MF_0161971 .
?targetMotifMatchRegionMatch78 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0161979 .
?targetMotifMatchRegionMatchBeginMF_0161979 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0161972 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0161980 edam:has_input signature:MF_01619 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26616MF_0161969, 1, (STRLEN(?templateMotifCigarP26616MF_0161969) - STRLEN(REPLACE(?templateMotifCigarP26616MF_0161969, CONCAT('^(?:-*[^-]){', STR(((270 - ?templateMotifSequenceMatchBeginPositionP2661670) + 1)), '}'), '')))), '[a-z]', '')) AS ?step181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26616MF_0161971, 1, (STRLEN(?targetMotifMatchCigarP26616MF_0161971) - STRLEN(REPLACE(?targetMotifMatchCigarP26616MF_0161971, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26616MF_0161971, 1, (STRLEN(?targetMotifMatchCigarP26616MF_0161971) - STRLEN(REPLACE(?targetMotifMatchCigarP26616MF_0161971, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), '')))), '[^-]', ''))) AS ?step282) .
BIND(((?step282 + ?targetMotifMatchRegionMatchBeginPositionMF_0161972) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER (BOUND(?thisPositionOn13)) .
BIND(URI(CONCAT(STR(?this), '#MF_01619a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch88 faldo:location ?templateMotifSequenceMatchRegionP2661689 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2661691 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP26616MF_0161984 .
?templateMotifSequenceMatchRegionP2661689 faldo:begin ?templateMotifSequenceMatchBeginP2661690 .
?templateMotifSequenceMatchBeginP2661690 faldo:position ?templateMotifSequenceMatchBeginPositionP2661685 ;
faldo:reference isoform:P26616-1 .
?templateMotifSequenceProfileAlignmentOperationP2661691 edam:has_input signature:MF_01619 ;
rdf:type edam:operation_0300 .
?targetMotifMatch92 faldo:location ?targetMotifMatchRegionMatch93 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0161995 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP26616MF_0161986 .
?targetMotifMatchRegionMatch93 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0161994 .
?targetMotifMatchRegionMatchBeginMF_0161994 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0161987 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0161995 edam:has_input signature:MF_01619 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26616MF_0161984, 1, (STRLEN(?templateMotifCigarP26616MF_0161984) - STRLEN(REPLACE(?templateMotifCigarP26616MF_0161984, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionP2661685) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26616MF_0161986, 1, (STRLEN(?targetMotifMatchCigarP26616MF_0161986) - STRLEN(REPLACE(?targetMotifMatchCigarP26616MF_0161986, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26616MF_0161986, 1, (STRLEN(?targetMotifMatchCigarP26616MF_0161986) - STRLEN(REPLACE(?targetMotifMatchCigarP26616MF_0161986, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) .
BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0161987) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01619a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch103 faldo:location ?templateMotifSequenceMatchRegionP26616104 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26616106 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP26616MF_0161999 .
?templateMotifSequenceMatchRegionP26616104 faldo:begin ?templateMotifSequenceMatchBeginP26616105 .
?templateMotifSequenceMatchBeginP26616105 faldo:position ?templateMotifSequenceMatchBeginPositionP26616100 ;
faldo:reference isoform:P26616-1 .
?templateMotifSequenceProfileAlignmentOperationP26616106 edam:has_input signature:MF_01619 ;
rdf:type edam:operation_0300 .
?targetMotifMatch107 faldo:location ?targetMotifMatchRegionMatch108 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01619110 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP26616MF_01619101 .
?targetMotifMatchRegionMatch108 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01619109 .
?targetMotifMatchRegionMatchBeginMF_01619109 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01619102 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01619110 edam:has_input signature:MF_01619 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26616MF_0161999, 1, (STRLEN(?templateMotifCigarP26616MF_0161999) - STRLEN(REPLACE(?templateMotifCigarP26616MF_0161999, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionP26616100) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26616MF_01619101, 1, (STRLEN(?targetMotifMatchCigarP26616MF_01619101) - STRLEN(REPLACE(?targetMotifMatchCigarP26616MF_01619101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26616MF_01619101, 1, (STRLEN(?targetMotifMatchCigarP26616MF_01619101) - STRLEN(REPLACE(?targetMotifMatchCigarP26616MF_01619101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) .
BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_01619102) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01619a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch118 faldo:location ?templateMotifSequenceMatchRegionP26616119 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26616121 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP26616MF_01619114 .
?templateMotifSequenceMatchRegionP26616119 faldo:begin ?templateMotifSequenceMatchBeginP26616120 .
?templateMotifSequenceMatchBeginP26616120 faldo:position ?templateMotifSequenceMatchBeginPositionP26616115 ;
faldo:reference isoform:P26616-1 .
?templateMotifSequenceProfileAlignmentOperationP26616121 edam:has_input signature:MF_01619 ;
rdf:type edam:operation_0300 .
?targetMotifMatch122 faldo:location ?targetMotifMatchRegionMatch123 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01619125 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP26616MF_01619116 .
?targetMotifMatchRegionMatch123 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01619124 .
?targetMotifMatchRegionMatchBeginMF_01619124 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01619117 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01619125 edam:has_input signature:MF_01619 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26616MF_01619114, 1, (STRLEN(?templateMotifCigarP26616MF_01619114) - STRLEN(REPLACE(?templateMotifCigarP26616MF_01619114, CONCAT('^(?:-*[^-]){', STR(((246 - ?templateMotifSequenceMatchBeginPositionP26616115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26616MF_01619116, 1, (STRLEN(?targetMotifMatchCigarP26616MF_01619116) - STRLEN(REPLACE(?targetMotifMatchCigarP26616MF_01619116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26616MF_01619116, 1, (STRLEN(?targetMotifMatchCigarP26616MF_01619116) - STRLEN(REPLACE(?targetMotifMatchCigarP26616MF_01619116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) .
BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_01619117) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01619a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionP26616134 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26616136 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP26616MF_01619129 .
?templateMotifSequenceMatchRegionP26616134 faldo:begin ?templateMotifSequenceMatchBeginP26616135 .
?templateMotifSequenceMatchBeginP26616135 faldo:position ?templateMotifSequenceMatchBeginPositionP26616130 ;
faldo:reference isoform:P26616-1 .
?templateMotifSequenceProfileAlignmentOperationP26616136 edam:has_input signature:MF_01619 ;
rdf:type edam:operation_0300 .
?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01619140 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP26616MF_01619131 .
?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01619139 .
?targetMotifMatchRegionMatchBeginMF_01619139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01619132 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01619140 edam:has_input signature:MF_01619 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26616MF_01619129, 1, (STRLEN(?templateMotifCigarP26616MF_01619129) - STRLEN(REPLACE(?templateMotifCigarP26616MF_01619129, CONCAT('^(?:-*[^-]){', STR(((247 - ?templateMotifSequenceMatchBeginPositionP26616130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26616MF_01619131, 1, (STRLEN(?targetMotifMatchCigarP26616MF_01619131) - STRLEN(REPLACE(?targetMotifMatchCigarP26616MF_01619131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26616MF_01619131, 1, (STRLEN(?targetMotifMatchCigarP26616MF_01619131) - STRLEN(REPLACE(?targetMotifMatchCigarP26616MF_01619131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_01619132) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01619a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionP26616149 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26616151 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP26616MF_01619144 .
?templateMotifSequenceMatchRegionP26616149 faldo:begin ?templateMotifSequenceMatchBeginP26616150 .
?templateMotifSequenceMatchBeginP26616150 faldo:position ?templateMotifSequenceMatchBeginPositionP26616145 ;
faldo:reference isoform:P26616-1 .
?templateMotifSequenceProfileAlignmentOperationP26616151 edam:has_input signature:MF_01619 ;
rdf:type edam:operation_0300 .
?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01619155 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP26616MF_01619146 .
?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01619154 .
?targetMotifMatchRegionMatchBeginMF_01619154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01619147 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01619155 edam:has_input signature:MF_01619 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26616MF_01619144, 1, (STRLEN(?templateMotifCigarP26616MF_01619144) - STRLEN(REPLACE(?templateMotifCigarP26616MF_01619144, CONCAT('^(?:-*[^-]){', STR(((270 - ?templateMotifSequenceMatchBeginPositionP26616145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26616MF_01619146, 1, (STRLEN(?targetMotifMatchCigarP26616MF_01619146) - STRLEN(REPLACE(?targetMotifMatchCigarP26616MF_01619146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26616MF_01619146, 1, (STRLEN(?targetMotifMatchCigarP26616MF_01619146) - STRLEN(REPLACE(?targetMotifMatchCigarP26616MF_01619146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) .
BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_01619147) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t158) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01619a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch163 faldo:location ?templateMotifSequenceMatchRegionP26616164 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26616166 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP26616MF_01619159 .
?templateMotifSequenceMatchRegionP26616164 faldo:begin ?templateMotifSequenceMatchBeginP26616165 .
?templateMotifSequenceMatchBeginP26616165 faldo:position ?templateMotifSequenceMatchBeginPositionP26616160 ;
faldo:reference isoform:P26616-1 .
?templateMotifSequenceProfileAlignmentOperationP26616166 edam:has_input signature:MF_01619 ;
rdf:type edam:operation_0300 .
?targetMotifMatch167 faldo:location ?targetMotifMatchRegionMatch168 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01619170 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP26616MF_01619161 .
?targetMotifMatchRegionMatch168 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01619169 .
?targetMotifMatchRegionMatchBeginMF_01619169 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01619162 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01619170 edam:has_input signature:MF_01619 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26616MF_01619159, 1, (STRLEN(?templateMotifCigarP26616MF_01619159) - STRLEN(REPLACE(?templateMotifCigarP26616MF_01619159, CONCAT('^(?:-*[^-]){', STR(((157 - ?templateMotifSequenceMatchBeginPositionP26616160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26616MF_01619161, 1, (STRLEN(?targetMotifMatchCigarP26616MF_01619161) - STRLEN(REPLACE(?targetMotifMatchCigarP26616MF_01619161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26616MF_01619161, 1, (STRLEN(?targetMotifMatchCigarP26616MF_01619161) - STRLEN(REPLACE(?targetMotifMatchCigarP26616MF_01619161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) .
BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_01619162) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t173) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01619a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch178 faldo:location ?templateMotifSequenceMatchRegionP26616179 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26616181 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP26616MF_01619174 .
?templateMotifSequenceMatchRegionP26616179 faldo:begin ?templateMotifSequenceMatchBeginP26616180 .
?templateMotifSequenceMatchBeginP26616180 faldo:position ?templateMotifSequenceMatchBeginPositionP26616175 ;
faldo:reference isoform:P26616-1 .
?templateMotifSequenceProfileAlignmentOperationP26616181 edam:has_input signature:MF_01619 ;
rdf:type edam:operation_0300 .
?targetMotifMatch182 faldo:location ?targetMotifMatchRegionMatch183 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01619185 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP26616MF_01619176 .
?targetMotifMatchRegionMatch183 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01619184 .
?targetMotifMatchRegionMatchBeginMF_01619184 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01619177 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01619185 edam:has_input signature:MF_01619 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26616MF_01619174, 1, (STRLEN(?templateMotifCigarP26616MF_01619174) - STRLEN(REPLACE(?templateMotifCigarP26616MF_01619174, CONCAT('^(?:-*[^-]){', STR(((270 - ?templateMotifSequenceMatchBeginPositionP26616175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26616MF_01619176, 1, (STRLEN(?targetMotifMatchCigarP26616MF_01619176) - STRLEN(REPLACE(?targetMotifMatchCigarP26616MF_01619176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26616MF_01619176, 1, (STRLEN(?targetMotifMatchCigarP26616MF_01619176) - STRLEN(REPLACE(?targetMotifMatchCigarP26616MF_01619176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), '')))), '[^-]', ''))) AS ?step2187) .
BIND(((?step2187 + ?targetMotifMatchRegionMatchBeginPositionMF_01619177) - 1) AS ?thisPositionOn60) .
BIND(?thisPositionOn60 AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t188) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01619a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch193 faldo:location ?templateMotifSequenceMatchRegionP26616194 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26616196 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP26616MF_01619189 .
?templateMotifSequenceMatchRegionP26616194 faldo:begin ?templateMotifSequenceMatchBeginP26616195 .
?templateMotifSequenceMatchBeginP26616195 faldo:position ?templateMotifSequenceMatchBeginPositionP26616190 ;
faldo:reference isoform:P26616-1 .
?templateMotifSequenceProfileAlignmentOperationP26616196 edam:has_input signature:MF_01619 ;
rdf:type edam:operation_0300 .
?targetMotifMatch197 faldo:location ?targetMotifMatchRegionMatch198 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01619200 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP26616MF_01619191 .
?targetMotifMatchRegionMatch198 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01619199 .
?targetMotifMatchRegionMatchBeginMF_01619199 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01619192 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01619200 edam:has_input signature:MF_01619 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26616MF_01619189, 1, (STRLEN(?templateMotifCigarP26616MF_01619189) - STRLEN(REPLACE(?templateMotifCigarP26616MF_01619189, CONCAT('^(?:-*[^-]){', STR(((418 - ?templateMotifSequenceMatchBeginPositionP26616190) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1201) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26616MF_01619191, 1, (STRLEN(?targetMotifMatchCigarP26616MF_01619191) - STRLEN(REPLACE(?targetMotifMatchCigarP26616MF_01619191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26616MF_01619191, 1, (STRLEN(?targetMotifMatchCigarP26616MF_01619191) - STRLEN(REPLACE(?targetMotifMatchCigarP26616MF_01619191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), '')))), '[^-]', ''))) AS ?step2202) .
BIND(((?step2202 + ?targetMotifMatchRegionMatchBeginPositionMF_01619192) - 1) AS ?thisPositionOn67) .
BIND(?thisPositionOn67 AS ?thisPositionOn68) .
BIND(?this AS ?pfs1t203) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse65) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01619a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
}
"xsd:string |
