| http://purl.uniprot.org/unirules/MF_01625#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:589023 up:source unirule:MF_01625 .
_:589024 up:source unirule:MF_01625 .
_:589025 up:source unirule:MF_01625 .
_:589026 up:source unirule:MF_01625 .
_:589027 up:source unirule:MF_01625 .
_:589028 up:source unirule:MF_01625 .
_:589029 up:source unirule:MF_01625 .
_:589030 up:source unirule:MF_01625 .
_:589031 up:source unirule:MF_01625 .
_:589032 up:source unirule:MF_01625 .
_:589033 up:source unirule:MF_01625 .
_:589034 up:source unirule:MF_01625 .
_:589035 up:source unirule:MF_01625 .
_:589036 up:source unirule:MF_01625 .
_:589037 up:source unirule:MF_01625 .
_:589038 up:source unirule:MF_01625 .
_:589039 up:source unirule:MF_01625 .
_:589040 up:source unirule:MF_01625 .
_:589041 up:source unirule:MF_01625 .
_:589042 up:source unirule:MF_01625 .
_:589043 up:source unirule:MF_01625 .
_:589044 up:source unirule:MF_01625 .
_:589045 up:source unirule:MF_01625 .
_:589046 up:source unirule:MF_01625 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation10 ;
up:classifiedWith GO:0005737 ,
GO:0016887 ,
keyword:143 ,
keyword:378 ,
keyword:547 ,
keyword:67 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.6.1.-' ;
up:fullName 'Regulatory ATPase RavA' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Regulatory ATPase variant A' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'ravA' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Component of the RavA-ViaA chaperone complex, which may act on the membrane to optimize the function of some of the respiratory chains. RavA functions as an ATPase.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity .
?annotation6 a up:Activity_Regulation_Annotation ;
rdfs:comment 'ATPase activity is stimulated by ViaA.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homohexamer. Interacts with ViaA.' .
?annotation8 a up:Subcellular_Location_Annotation .
?annotation8li9 up:cellularComponent .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the RavA family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:456216 .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:456216 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:456216 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:456216 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:456216 .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf chebi:456216 .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf chebi:456216 .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
up:ligand ?ligand64 ;
rdf:type up:Binding_Site_Annotation .
?pfsb62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?ligand64 rdfs:subClassOf chebi:456216 .
_:589047 a rdf:Statement ;
up:attribution _:589023 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:589048 a rdf:Statement ;
up:attribution _:589024 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:589049 a rdf:Statement ;
up:attribution _:589025 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:589050 a rdf:Statement ;
up:attribution _:589026 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:589051 a rdf:Statement ;
up:attribution _:589027 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:589052 a rdf:Statement ;
up:attribution _:589028 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:589053 a rdf:Statement ;
up:attribution _:589029 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:589054 a rdf:Statement ;
up:attribution _:589030 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:589055 a rdf:Statement ;
up:attribution _:589031 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:589056 a rdf:Statement ;
up:attribution _:589032 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:589057 a rdf:Statement ;
up:attribution _:589033 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:143 .
_:589058 a rdf:Statement ;
up:attribution _:589034 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:589059 a rdf:Statement ;
up:attribution _:589035 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:589060 a rdf:Statement ;
up:attribution _:589036 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:589061 a rdf:Statement ;
up:attribution _:589037 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016887 .
_:589062 a rdf:Statement ;
up:attribution _:589038 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:589063 a rdf:Statement ;
up:source unirule:MF_01625 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:589064 a rdf:Statement ;
up:attribution _:589039 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:589065 a rdf:Statement ;
up:source unirule:MF_01625 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:589066 a rdf:Statement ;
up:attribution _:589040 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:589067 a rdf:Statement ;
up:source unirule:MF_01625 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:589068 a rdf:Statement ;
up:attribution _:589041 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:589069 a rdf:Statement ;
up:source unirule:MF_01625 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:589070 a rdf:Statement ;
up:attribution _:589042 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:589071 a rdf:Statement ;
up:source unirule:MF_01625 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:589072 a rdf:Statement ;
up:attribution _:589043 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:589073 a rdf:Statement ;
up:source unirule:MF_01625 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:589074 a rdf:Statement ;
up:attribution _:589044 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:589075 a rdf:Statement ;
up:source unirule:MF_01625 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:589076 a rdf:Statement ;
up:attribution _:589045 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:589077 a rdf:Statement ;
up:source unirule:MF_01625 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:589078 a rdf:Statement ;
up:attribution _:589046 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01625
#Rule MF_01625 Created by:? on:2005-12-12 Modified by:Catherine Rivoire on:2025-03-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01625 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_01625a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01625a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01625a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01625a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01625a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01625a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01625a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01625a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch71 faldo:location ?templateMotifSequenceMatchRegionP3147372 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3147374 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31473MF_0162567 .
?templateMotifSequenceMatchRegionP3147372 faldo:begin ?templateMotifSequenceMatchBeginP3147373 .
?templateMotifSequenceMatchBeginP3147373 faldo:position ?templateMotifSequenceMatchBeginPositionP3147368 ;
faldo:reference isoform:P31473-1 .
?templateMotifSequenceProfileAlignmentOperationP3147374 edam:has_input signature:MF_01625 ;
rdf:type edam:operation_0300 .
?targetMotifMatch75 faldo:location ?targetMotifMatchRegionMatch76 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0162578 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31473MF_0162569 .
?targetMotifMatchRegionMatch76 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0162577 .
?targetMotifMatchRegionMatchBeginMF_0162577 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0162570 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0162578 edam:has_input signature:MF_01625 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31473MF_0162567, 1, (STRLEN(?templateMotifCigarP31473MF_0162567) - STRLEN(REPLACE(?templateMotifCigarP31473MF_0162567, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionP3147368) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31473MF_0162569, 1, (STRLEN(?targetMotifMatchCigarP31473MF_0162569) - STRLEN(REPLACE(?targetMotifMatchCigarP31473MF_0162569, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31473MF_0162569, 1, (STRLEN(?targetMotifMatchCigarP31473MF_0162569) - STRLEN(REPLACE(?targetMotifMatchCigarP31473MF_0162569, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) .
BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0162570) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01625a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch86 faldo:location ?templateMotifSequenceMatchRegionP3147387 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3147389 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31473MF_0162582 .
?templateMotifSequenceMatchRegionP3147387 faldo:begin ?templateMotifSequenceMatchBeginP3147388 .
?templateMotifSequenceMatchBeginP3147388 faldo:position ?templateMotifSequenceMatchBeginPositionP3147383 ;
faldo:reference isoform:P31473-1 .
?templateMotifSequenceProfileAlignmentOperationP3147389 edam:has_input signature:MF_01625 ;
rdf:type edam:operation_0300 .
?targetMotifMatch90 faldo:location ?targetMotifMatchRegionMatch91 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0162593 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31473MF_0162584 .
?targetMotifMatchRegionMatch91 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0162592 .
?targetMotifMatchRegionMatchBeginMF_0162592 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0162585 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0162593 edam:has_input signature:MF_01625 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31473MF_0162582, 1, (STRLEN(?templateMotifCigarP31473MF_0162582) - STRLEN(REPLACE(?templateMotifCigarP31473MF_0162582, CONCAT('^(?:-*[^-]){', STR(((49 - ?templateMotifSequenceMatchBeginPositionP3147383) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31473MF_0162584, 1, (STRLEN(?targetMotifMatchCigarP31473MF_0162584) - STRLEN(REPLACE(?targetMotifMatchCigarP31473MF_0162584, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31473MF_0162584, 1, (STRLEN(?targetMotifMatchCigarP31473MF_0162584) - STRLEN(REPLACE(?targetMotifMatchCigarP31473MF_0162584, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) .
BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0162585) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01625a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch101 faldo:location ?templateMotifSequenceMatchRegionP31473102 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31473104 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31473MF_0162597 .
?templateMotifSequenceMatchRegionP31473102 faldo:begin ?templateMotifSequenceMatchBeginP31473103 .
?templateMotifSequenceMatchBeginP31473103 faldo:position ?templateMotifSequenceMatchBeginPositionP3147398 ;
faldo:reference isoform:P31473-1 .
?templateMotifSequenceProfileAlignmentOperationP31473104 edam:has_input signature:MF_01625 ;
rdf:type edam:operation_0300 .
?targetMotifMatch105 faldo:location ?targetMotifMatchRegionMatch106 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01625108 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31473MF_0162599 .
?targetMotifMatchRegionMatch106 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01625107 .
?targetMotifMatchRegionMatchBeginMF_01625107 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01625100 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01625108 edam:has_input signature:MF_01625 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31473MF_0162597, 1, (STRLEN(?templateMotifCigarP31473MF_0162597) - STRLEN(REPLACE(?templateMotifCigarP31473MF_0162597, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionP3147398) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31473MF_0162599, 1, (STRLEN(?targetMotifMatchCigarP31473MF_0162599) - STRLEN(REPLACE(?targetMotifMatchCigarP31473MF_0162599, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31473MF_0162599, 1, (STRLEN(?targetMotifMatchCigarP31473MF_0162599) - STRLEN(REPLACE(?targetMotifMatchCigarP31473MF_0162599, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) .
BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_01625100) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'I')) .
BIND(URI(CONCAT(STR(?this), '#MF_01625a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch116 faldo:location ?templateMotifSequenceMatchRegionP31473117 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31473119 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31473MF_01625112 .
?templateMotifSequenceMatchRegionP31473117 faldo:begin ?templateMotifSequenceMatchBeginP31473118 .
?templateMotifSequenceMatchBeginP31473118 faldo:position ?templateMotifSequenceMatchBeginPositionP31473113 ;
faldo:reference isoform:P31473-1 .
?templateMotifSequenceProfileAlignmentOperationP31473119 edam:has_input signature:MF_01625 ;
rdf:type edam:operation_0300 .
?targetMotifMatch120 faldo:location ?targetMotifMatchRegionMatch121 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01625123 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31473MF_01625114 .
?targetMotifMatchRegionMatch121 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01625122 .
?targetMotifMatchRegionMatchBeginMF_01625122 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01625115 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01625123 edam:has_input signature:MF_01625 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31473MF_01625112, 1, (STRLEN(?templateMotifCigarP31473MF_01625112) - STRLEN(REPLACE(?templateMotifCigarP31473MF_01625112, CONCAT('^(?:-*[^-]){', STR(((51 - ?templateMotifSequenceMatchBeginPositionP31473113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31473MF_01625114, 1, (STRLEN(?targetMotifMatchCigarP31473MF_01625114) - STRLEN(REPLACE(?targetMotifMatchCigarP31473MF_01625114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31473MF_01625114, 1, (STRLEN(?targetMotifMatchCigarP31473MF_01625114) - STRLEN(REPLACE(?targetMotifMatchCigarP31473MF_01625114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) .
BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_01625115) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'A')) .
BIND(URI(CONCAT(STR(?this), '#MF_01625a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionP31473132 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31473134 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31473MF_01625127 .
?templateMotifSequenceMatchRegionP31473132 faldo:begin ?templateMotifSequenceMatchBeginP31473133 .
?templateMotifSequenceMatchBeginP31473133 faldo:position ?templateMotifSequenceMatchBeginPositionP31473128 ;
faldo:reference isoform:P31473-1 .
?templateMotifSequenceProfileAlignmentOperationP31473134 edam:has_input signature:MF_01625 ;
rdf:type edam:operation_0300 .
?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01625138 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31473MF_01625129 .
?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01625137 .
?targetMotifMatchRegionMatchBeginMF_01625137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01625130 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01625138 edam:has_input signature:MF_01625 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31473MF_01625127, 1, (STRLEN(?templateMotifCigarP31473MF_01625127) - STRLEN(REPLACE(?templateMotifCigarP31473MF_01625127, CONCAT('^(?:-*[^-]){', STR(((52 - ?templateMotifSequenceMatchBeginPositionP31473128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31473MF_01625129, 1, (STRLEN(?targetMotifMatchCigarP31473MF_01625129) - STRLEN(REPLACE(?targetMotifMatchCigarP31473MF_01625129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31473MF_01625129, 1, (STRLEN(?targetMotifMatchCigarP31473MF_01625129) - STRLEN(REPLACE(?targetMotifMatchCigarP31473MF_01625129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) .
BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_01625130) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t141) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01625a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch146 faldo:location ?templateMotifSequenceMatchRegionP31473147 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31473149 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31473MF_01625142 .
?templateMotifSequenceMatchRegionP31473147 faldo:begin ?templateMotifSequenceMatchBeginP31473148 .
?templateMotifSequenceMatchBeginP31473148 faldo:position ?templateMotifSequenceMatchBeginPositionP31473143 ;
faldo:reference isoform:P31473-1 .
?templateMotifSequenceProfileAlignmentOperationP31473149 edam:has_input signature:MF_01625 ;
rdf:type edam:operation_0300 .
?targetMotifMatch150 faldo:location ?targetMotifMatchRegionMatch151 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01625153 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31473MF_01625144 .
?targetMotifMatchRegionMatch151 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01625152 .
?targetMotifMatchRegionMatchBeginMF_01625152 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01625145 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01625153 edam:has_input signature:MF_01625 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31473MF_01625142, 1, (STRLEN(?templateMotifCigarP31473MF_01625142) - STRLEN(REPLACE(?templateMotifCigarP31473MF_01625142, CONCAT('^(?:-*[^-]){', STR(((53 - ?templateMotifSequenceMatchBeginPositionP31473143) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31473MF_01625144, 1, (STRLEN(?targetMotifMatchCigarP31473MF_01625144) - STRLEN(REPLACE(?targetMotifMatchCigarP31473MF_01625144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31473MF_01625144, 1, (STRLEN(?targetMotifMatchCigarP31473MF_01625144) - STRLEN(REPLACE(?targetMotifMatchCigarP31473MF_01625144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), '')))), '[^-]', ''))) AS ?step2155) .
BIND(((?step2155 + ?targetMotifMatchRegionMatchBeginPositionMF_01625145) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t156) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01625a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch161 faldo:location ?templateMotifSequenceMatchRegionP31473162 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31473164 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31473MF_01625157 .
?templateMotifSequenceMatchRegionP31473162 faldo:begin ?templateMotifSequenceMatchBeginP31473163 .
?templateMotifSequenceMatchBeginP31473163 faldo:position ?templateMotifSequenceMatchBeginPositionP31473158 ;
faldo:reference isoform:P31473-1 .
?templateMotifSequenceProfileAlignmentOperationP31473164 edam:has_input signature:MF_01625 ;
rdf:type edam:operation_0300 .
?targetMotifMatch165 faldo:location ?targetMotifMatchRegionMatch166 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01625168 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31473MF_01625159 .
?targetMotifMatchRegionMatch166 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01625167 .
?targetMotifMatchRegionMatchBeginMF_01625167 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01625160 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01625168 edam:has_input signature:MF_01625 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31473MF_01625157, 1, (STRLEN(?templateMotifCigarP31473MF_01625157) - STRLEN(REPLACE(?templateMotifCigarP31473MF_01625157, CONCAT('^(?:-*[^-]){', STR(((54 - ?templateMotifSequenceMatchBeginPositionP31473158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31473MF_01625159, 1, (STRLEN(?targetMotifMatchCigarP31473MF_01625159) - STRLEN(REPLACE(?targetMotifMatchCigarP31473MF_01625159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31473MF_01625159, 1, (STRLEN(?targetMotifMatchCigarP31473MF_01625159) - STRLEN(REPLACE(?targetMotifMatchCigarP31473MF_01625159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), '')))), '[^-]', ''))) AS ?step2170) .
BIND(((?step2170 + ?targetMotifMatchRegionMatchBeginPositionMF_01625160) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t171) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) .
FILTER (REGEX('[LM]', SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01625a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch176 faldo:location ?templateMotifSequenceMatchRegionP31473177 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31473179 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31473MF_01625172 .
?templateMotifSequenceMatchRegionP31473177 faldo:begin ?templateMotifSequenceMatchBeginP31473178 .
?templateMotifSequenceMatchBeginP31473178 faldo:position ?templateMotifSequenceMatchBeginPositionP31473173 ;
faldo:reference isoform:P31473-1 .
?templateMotifSequenceProfileAlignmentOperationP31473179 edam:has_input signature:MF_01625 ;
rdf:type edam:operation_0300 .
?targetMotifMatch180 faldo:location ?targetMotifMatchRegionMatch181 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01625183 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31473MF_01625174 .
?targetMotifMatchRegionMatch181 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01625182 .
?targetMotifMatchRegionMatchBeginMF_01625182 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01625175 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01625183 edam:has_input signature:MF_01625 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31473MF_01625172, 1, (STRLEN(?templateMotifCigarP31473MF_01625172) - STRLEN(REPLACE(?templateMotifCigarP31473MF_01625172, CONCAT('^(?:-*[^-]){', STR(((196 - ?templateMotifSequenceMatchBeginPositionP31473173) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31473MF_01625174, 1, (STRLEN(?targetMotifMatchCigarP31473MF_01625174) - STRLEN(REPLACE(?targetMotifMatchCigarP31473MF_01625174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31473MF_01625174, 1, (STRLEN(?targetMotifMatchCigarP31473MF_01625174) - STRLEN(REPLACE(?targetMotifMatchCigarP31473MF_01625174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), '')))), '[^-]', ''))) AS ?step2185) .
BIND(((?step2185 + ?targetMotifMatchRegionMatchBeginPositionMF_01625175) - 1) AS ?thisPositionOn65) .
BIND(?thisPositionOn65 AS ?thisPositionOn66) .
BIND(?this AS ?pfs1t186) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) .
FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01625a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
}
"xsd:string |
