| http://purl.uniprot.org/unirules/MF_01627#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:589683 up:source unirule:MF_01627 .
_:589684 up:source unirule:MF_01627 .
_:589685 up:source unirule:MF_01627 .
_:589686 up:source unirule:MF_01627 .
_:589687 up:source unirule:MF_01627 .
_:589688 up:source unirule:MF_01627 .
_:589689 up:source unirule:MF_01627 .
_:589690 up:source unirule:MF_01627 .
_:589691 up:source unirule:MF_01627 .
_:589692 up:source unirule:MF_01627 .
_:589693 up:source unirule:MF_01627 .
_:589694 up:source unirule:MF_01627 .
_:589695 up:source unirule:MF_01627 .
_:589696 up:source unirule:MF_01627 .
_:589697 up:source unirule:MF_01627 .
_:589698 up:source unirule:MF_01627 .
_:589699 up:source unirule:MF_01627 .
_:589700 up:source unirule:MF_01627 .
_:589701 up:source unirule:MF_01627 .
_:589702 up:source unirule:MF_01627 .
_:589703 up:source unirule:MF_01627 .
_:589704 up:source unirule:MF_01627 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0004731 ,
GO:0042278 ,
keyword:328 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.4.2.1' ;
up:fullName 'Purine nucleoside phosphorylase DeoD-type' ;
up:shortName 'PNP' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'deoD' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the reversible phosphorolytic breakdown of the N-glycosidic bond in the beta-(deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homohexamer; trimer of homodimers.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the PNP/UDP phosphorylase family.' .
?case9 up:classifiedWith keyword:7 .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine' .
?pfsb12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for catalytic activity' .
?pfsb24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:43474 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:142355 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:142355 .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:142355 .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
up:ligand ?ligand60 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand60 rdfs:subClassOf chebi:43474 .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
up:ligand ?ligand67 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?ligand67 rdfs:subClassOf chebi:43474 .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
up:ligand ?ligand74 ;
rdf:type up:Binding_Site_Annotation .
?pfsb72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?ligand74 rdfs:subClassOf chebi:43474 .
_:589705 a rdf:Statement ;
up:attribution _:589683 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:589706 a rdf:Statement ;
up:attribution _:589684 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:589707 a rdf:Statement ;
up:attribution _:589685 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:589708 a rdf:Statement ;
up:attribution _:589686 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:589709 a rdf:Statement ;
up:attribution _:589687 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:589710 a rdf:Statement ;
up:attribution _:589688 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:589711 a rdf:Statement ;
up:attribution _:589689 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:589712 a rdf:Statement ;
up:attribution _:589690 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:328 .
_:589713 a rdf:Statement ;
up:attribution _:589691 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:589714 a rdf:Statement ;
up:attribution _:589692 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004731 .
_:589715 a rdf:Statement ;
up:attribution _:589693 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042278 .
_:589716 a rdf:Statement ;
up:attribution _:589694 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:7 .
_:589717 a rdf:Statement ;
up:source unirule:MF_01627 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:589718 a rdf:Statement ;
up:attribution _:589695 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:589719 a rdf:Statement ;
up:source unirule:MF_01627 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:589720 a rdf:Statement ;
up:attribution _:589696 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:589721 a rdf:Statement ;
up:source unirule:MF_01627 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:589722 a rdf:Statement ;
up:attribution _:589697 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:589723 a rdf:Statement ;
up:source unirule:MF_01627 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:589724 a rdf:Statement ;
up:attribution _:589698 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:589725 a rdf:Statement ;
up:source unirule:MF_01627 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:589726 a rdf:Statement ;
up:attribution _:589699 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:589727 a rdf:Statement ;
up:source unirule:MF_01627 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:589728 a rdf:Statement ;
up:attribution _:589700 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:589729 a rdf:Statement ;
up:source unirule:MF_01627 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:589730 a rdf:Statement ;
up:attribution _:589701 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:589731 a rdf:Statement ;
up:source unirule:MF_01627 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:589732 a rdf:Statement ;
up:attribution _:589702 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:589733 a rdf:Statement ;
up:source unirule:MF_01627 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:589734 a rdf:Statement ;
up:attribution _:589703 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:589735 a rdf:Statement ;
up:source unirule:MF_01627 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:589736 a rdf:Statement ;
up:attribution _:589704 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01627
#Rule MF_01627 Created by:? on:2005-12-13 Modified by:Edouard de Castro on:2024-09-03
VALUES ?supertaxon77 {taxon:1239 taxon:1224}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01627 .
?thisOrganism rdfs:subClassOf+ ?supertaxon77 .
BIND(URI(CONCAT(STR(?this), '#MF_01627a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01627a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01627a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01627a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01627a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01627a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch83 faldo:location ?templateMotifSequenceMatchRegionP0ABP884 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABP886 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABP8MF_0162779 .
?templateMotifSequenceMatchRegionP0ABP884 faldo:begin ?templateMotifSequenceMatchBeginP0ABP885 .
?templateMotifSequenceMatchBeginP0ABP885 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABP880 ;
faldo:reference isoform:P0ABP8-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABP886 edam:has_input signature:MF_01627 ;
rdf:type edam:operation_0300 .
?targetMotifMatch87 faldo:location ?targetMotifMatchRegionMatch88 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0162790 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABP8MF_0162781 .
?targetMotifMatchRegionMatch88 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0162789 .
?targetMotifMatchRegionMatchBeginMF_0162789 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0162782 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0162790 edam:has_input signature:MF_01627 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagacetylation) .
VALUES ?supertaxon78 {taxon:561 taxon:620}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon78 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABP8MF_0162779, 1, (STRLEN(?templateMotifCigarP0ABP8MF_0162779) - STRLEN(REPLACE(?templateMotifCigarP0ABP8MF_0162779, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionP0ABP880) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABP8MF_0162781, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_0162781) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_0162781, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABP8MF_0162781, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_0162781) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_0162781, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0162782) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01627a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionP0ABP899 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABP8101 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABP8MF_0162794 .
?templateMotifSequenceMatchRegionP0ABP899 faldo:begin ?templateMotifSequenceMatchBeginP0ABP8100 .
?templateMotifSequenceMatchBeginP0ABP8100 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABP895 ;
faldo:reference isoform:P0ABP8-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABP8101 edam:has_input signature:MF_01627 ;
rdf:type edam:operation_0300 .
?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01627105 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABP8MF_0162796 .
?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01627104 .
?targetMotifMatchRegionMatchBeginMF_01627104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0162797 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01627105 edam:has_input signature:MF_01627 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABP8MF_0162794, 1, (STRLEN(?templateMotifCigarP0ABP8MF_0162794) - STRLEN(REPLACE(?templateMotifCigarP0ABP8MF_0162794, CONCAT('^(?:-*[^-]){', STR(((205 - ?templateMotifSequenceMatchBeginPositionP0ABP895) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABP8MF_0162796, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_0162796) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_0162796, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABP8MF_0162796, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_0162796) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_0162796, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0162797) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs2t108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01627a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionP0ABP8114 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABP8116 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABP8MF_01627109 .
?templateMotifSequenceMatchRegionP0ABP8114 faldo:begin ?templateMotifSequenceMatchBeginP0ABP8115 .
?templateMotifSequenceMatchBeginP0ABP8115 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABP8110 ;
faldo:reference isoform:P0ABP8-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABP8116 edam:has_input signature:MF_01627 ;
rdf:type edam:operation_0300 .
?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01627120 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABP8MF_01627111 .
?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01627119 .
?targetMotifMatchRegionMatchBeginMF_01627119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01627112 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01627120 edam:has_input signature:MF_01627 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABP8MF_01627109, 1, (STRLEN(?templateMotifCigarP0ABP8MF_01627109) - STRLEN(REPLACE(?templateMotifCigarP0ABP8MF_01627109, CONCAT('^(?:-*[^-]){', STR(((218 - ?templateMotifSequenceMatchBeginPositionP0ABP8110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABP8MF_01627111, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_01627111) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_01627111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABP8MF_01627111, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_01627111) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_01627111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) .
BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_01627112) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs2t123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01627a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch128 faldo:location ?templateMotifSequenceMatchRegionP0ABP8129 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABP8131 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABP8MF_01627124 .
?templateMotifSequenceMatchRegionP0ABP8129 faldo:begin ?templateMotifSequenceMatchBeginP0ABP8130 .
?templateMotifSequenceMatchBeginP0ABP8130 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABP8125 ;
faldo:reference isoform:P0ABP8-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABP8131 edam:has_input signature:MF_01627 ;
rdf:type edam:operation_0300 .
?targetMotifMatch132 faldo:location ?targetMotifMatchRegionMatch133 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01627135 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABP8MF_01627126 .
?targetMotifMatchRegionMatch133 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01627134 .
?targetMotifMatchRegionMatchBeginMF_01627134 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01627127 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01627135 edam:has_input signature:MF_01627 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABP8MF_01627124, 1, (STRLEN(?templateMotifCigarP0ABP8MF_01627124) - STRLEN(REPLACE(?templateMotifCigarP0ABP8MF_01627124, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionP0ABP8125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABP8MF_01627126, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_01627126) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_01627126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABP8MF_01627126, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_01627126) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_01627126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) .
BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_01627127) - 1) AS ?thisPositionOn33) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABP8MF_01627124, 1, (STRLEN(?templateMotifCigarP0ABP8MF_01627124) - STRLEN(REPLACE(?templateMotifCigarP0ABP8MF_01627124, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionP0ABP8125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABP8MF_01627126, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_01627126) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_01627126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABP8MF_01627126, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_01627126) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_01627126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) .
BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_01627127) - 1) AS ?thisPositionOn34) .
BIND(?this AS ?pfs2t140) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER (REGEX('R[IV]G[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn33, (?thisPositionOn34 - ?thisPositionOn33)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01627a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch145 faldo:location ?templateMotifSequenceMatchRegionP0ABP8146 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABP8148 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABP8MF_01627141 .
?templateMotifSequenceMatchRegionP0ABP8146 faldo:begin ?templateMotifSequenceMatchBeginP0ABP8147 .
?templateMotifSequenceMatchBeginP0ABP8147 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABP8142 ;
faldo:reference isoform:P0ABP8-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABP8148 edam:has_input signature:MF_01627 ;
rdf:type edam:operation_0300 .
?targetMotifMatch149 faldo:location ?targetMotifMatchRegionMatch150 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01627152 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABP8MF_01627143 .
?targetMotifMatchRegionMatch150 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01627151 .
?targetMotifMatchRegionMatchBeginMF_01627151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01627144 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01627152 edam:has_input signature:MF_01627 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABP8MF_01627141, 1, (STRLEN(?templateMotifCigarP0ABP8MF_01627141) - STRLEN(REPLACE(?templateMotifCigarP0ABP8MF_01627141, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionP0ABP8142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABP8MF_01627143, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_01627143) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_01627143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABP8MF_01627143, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_01627143) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_01627143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) .
BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_01627144) - 1) AS ?thisPositionOn40) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABP8MF_01627141, 1, (STRLEN(?templateMotifCigarP0ABP8MF_01627141) - STRLEN(REPLACE(?templateMotifCigarP0ABP8MF_01627141, CONCAT('^(?:-*[^-]){', STR(((182 - ?templateMotifSequenceMatchBeginPositionP0ABP8142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABP8MF_01627143, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_01627143) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_01627143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABP8MF_01627143, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_01627143) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_01627143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) .
BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_01627144) - 1) AS ?thisPositionOn41) .
BIND(?this AS ?pfs2t157) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER (REGEX('[ED]ME', SUBSTR(?thisSequenceValue, ?thisPositionOn40, (?thisPositionOn41 - ?thisPositionOn40)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01627a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch162 faldo:location ?templateMotifSequenceMatchRegionP0ABP8163 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABP8165 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABP8MF_01627158 .
?templateMotifSequenceMatchRegionP0ABP8163 faldo:begin ?templateMotifSequenceMatchBeginP0ABP8164 .
?templateMotifSequenceMatchBeginP0ABP8164 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABP8159 ;
faldo:reference isoform:P0ABP8-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABP8165 edam:has_input signature:MF_01627 ;
rdf:type edam:operation_0300 .
?targetMotifMatch166 faldo:location ?targetMotifMatchRegionMatch167 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01627169 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABP8MF_01627160 .
?targetMotifMatchRegionMatch167 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01627168 .
?targetMotifMatchRegionMatchBeginMF_01627168 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01627161 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01627169 edam:has_input signature:MF_01627 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABP8MF_01627158, 1, (STRLEN(?templateMotifCigarP0ABP8MF_01627158) - STRLEN(REPLACE(?templateMotifCigarP0ABP8MF_01627158, CONCAT('^(?:-*[^-]){', STR(((204 - ?templateMotifSequenceMatchBeginPositionP0ABP8159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABP8MF_01627160, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_01627160) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_01627160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABP8MF_01627160, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_01627160) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_01627160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), '')))), '[^-]', ''))) AS ?step2171) .
BIND(((?step2171 + ?targetMotifMatchRegionMatchBeginPositionMF_01627161) - 1) AS ?thisPositionOn47) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABP8MF_01627158, 1, (STRLEN(?templateMotifCigarP0ABP8MF_01627158) - STRLEN(REPLACE(?templateMotifCigarP0ABP8MF_01627158, CONCAT('^(?:-*[^-]){', STR(((205 - ?templateMotifSequenceMatchBeginPositionP0ABP8159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABP8MF_01627160, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_01627160) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_01627160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABP8MF_01627160, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_01627160) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_01627160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) .
BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_01627161) - 1) AS ?thisPositionOn48) .
BIND(?this AS ?pfs2t174) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER (REGEX('[ST][DN]', SUBSTR(?thisSequenceValue, ?thisPositionOn47, (?thisPositionOn48 - ?thisPositionOn47)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01627a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionP0ABP8180 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABP8182 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABP8MF_01627175 .
?templateMotifSequenceMatchRegionP0ABP8180 faldo:begin ?templateMotifSequenceMatchBeginP0ABP8181 .
?templateMotifSequenceMatchBeginP0ABP8181 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABP8176 ;
faldo:reference isoform:P0ABP8-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABP8182 edam:has_input signature:MF_01627 ;
rdf:type edam:operation_0300 .
?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01627186 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABP8MF_01627177 .
?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01627185 .
?targetMotifMatchRegionMatchBeginMF_01627185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01627178 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01627186 edam:has_input signature:MF_01627 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABP8MF_01627175, 1, (STRLEN(?templateMotifCigarP0ABP8MF_01627175) - STRLEN(REPLACE(?templateMotifCigarP0ABP8MF_01627175, CONCAT('^(?:-*[^-]){', STR(((5 - ?templateMotifSequenceMatchBeginPositionP0ABP8176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABP8MF_01627177, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_01627177) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_01627177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABP8MF_01627177, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_01627177) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_01627177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) .
BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_01627178) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs2t189) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01627a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionP0ABP8195 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABP8197 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABP8MF_01627190 .
?templateMotifSequenceMatchRegionP0ABP8195 faldo:begin ?templateMotifSequenceMatchBeginP0ABP8196 .
?templateMotifSequenceMatchBeginP0ABP8196 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABP8191 ;
faldo:reference isoform:P0ABP8-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABP8197 edam:has_input signature:MF_01627 ;
rdf:type edam:operation_0300 .
?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01627201 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABP8MF_01627192 .
?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01627200 .
?targetMotifMatchRegionMatchBeginMF_01627200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01627193 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01627201 edam:has_input signature:MF_01627 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABP8MF_01627190, 1, (STRLEN(?templateMotifCigarP0ABP8MF_01627190) - STRLEN(REPLACE(?templateMotifCigarP0ABP8MF_01627190, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionP0ABP8191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABP8MF_01627192, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_01627192) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_01627192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABP8MF_01627192, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_01627192) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_01627192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) .
BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_01627193) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs2t204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01627a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionP0ABP8210 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABP8212 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABP8MF_01627205 .
?templateMotifSequenceMatchRegionP0ABP8210 faldo:begin ?templateMotifSequenceMatchBeginP0ABP8211 .
?templateMotifSequenceMatchBeginP0ABP8211 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABP8206 ;
faldo:reference isoform:P0ABP8-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABP8212 edam:has_input signature:MF_01627 ;
rdf:type edam:operation_0300 .
?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01627216 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABP8MF_01627207 .
?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01627215 .
?targetMotifMatchRegionMatchBeginMF_01627215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01627208 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01627216 edam:has_input signature:MF_01627 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABP8MF_01627205, 1, (STRLEN(?templateMotifCigarP0ABP8MF_01627205) - STRLEN(REPLACE(?templateMotifCigarP0ABP8MF_01627205, CONCAT('^(?:-*[^-]){', STR(((25 - ?templateMotifSequenceMatchBeginPositionP0ABP8206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABP8MF_01627207, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_01627207) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_01627207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABP8MF_01627207, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_01627207) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_01627207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) .
BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_01627208) - 1) AS ?thisPositionOn68) .
BIND(?thisPositionOn68 AS ?thisPositionOn69) .
BIND(?this AS ?pfs2t219) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse66) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01627a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionP0ABP8225 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABP8227 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABP8MF_01627220 .
?templateMotifSequenceMatchRegionP0ABP8225 faldo:begin ?templateMotifSequenceMatchBeginP0ABP8226 .
?templateMotifSequenceMatchBeginP0ABP8226 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABP8221 ;
faldo:reference isoform:P0ABP8-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABP8227 edam:has_input signature:MF_01627 ;
rdf:type edam:operation_0300 .
?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01627231 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABP8MF_01627222 .
?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01627230 .
?targetMotifMatchRegionMatchBeginMF_01627230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01627223 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01627231 edam:has_input signature:MF_01627 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABP8MF_01627220, 1, (STRLEN(?templateMotifCigarP0ABP8MF_01627220) - STRLEN(REPLACE(?templateMotifCigarP0ABP8MF_01627220, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionP0ABP8221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABP8MF_01627222, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_01627222) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_01627222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABP8MF_01627222, 1, (STRLEN(?targetMotifMatchCigarP0ABP8MF_01627222) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABP8MF_01627222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) .
BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_01627223) - 1) AS ?thisPositionOn75) .
BIND(?thisPositionOn75 AS ?thisPositionOn76) .
BIND(?this AS ?pfs2t234) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01627a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag235) .
}
BIND(IF(BOUND(?tagacetylation), ?caseWithTag235, ?UNBOUND_VARIABLE) AS ?case9) .
}
"xsd:string |
