| http://purl.uniprot.org/unirules/MF_01645#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:599946 up:source unirule:MF_01645 .
_:599947 up:source unirule:MF_01645 .
_:599948 up:source unirule:MF_01645 .
_:599949 up:source unirule:MF_01645 .
_:599950 up:source unirule:MF_01645 .
_:599951 up:source unirule:MF_01645 .
_:599952 up:source unirule:MF_01645 .
_:599953 up:source unirule:MF_01645 .
_:599954 up:source unirule:MF_01645 .
_:599955 up:source unirule:MF_01645 .
_:599956 up:source unirule:MF_01645 .
_:599957 up:source unirule:MF_01645 .
_:599958 up:source unirule:MF_01645 .
_:599959 up:source unirule:MF_01645 .
_:599960 up:source unirule:MF_01645 .
_:599961 up:source unirule:MF_01645 .
_:599962 up:source unirule:MF_01645 .
_:599963 up:source unirule:MF_01645 .
_:599964 up:source unirule:MF_01645 .
_:599965 up:source unirule:MF_01645 .
_:599966 up:source unirule:MF_01645 .
_:599967 up:source unirule:MF_01645 .
_:599968 up:source unirule:MF_01645 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0000256 ,
GO:0004038 ,
keyword:378 ,
keyword:479 ,
keyword:659 ,
keyword:862 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.5.2.5' ;
up:fullName 'Allantoinase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Allantoin-utilizing enzyme' ;
rdf:type up:Structured_Name .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:29105 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 Zn(2+) ions per subunit.' .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Nitrogen metabolism; (S)-allantoin degradation; allantoate from (S)-allantoin: step 1/1.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer.' .
?annotation8 a up:PTM_Annotation ;
rdfs:comment 'Carboxylation allows a single lysine to coordinate two zinc ions.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the metallo-dependent hydrolases superfamily. Allantoinase family.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:29105 .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:29105 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'via carbamate group' .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:29105 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'via carbamate group' .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:29105 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf chebi:29105 .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:29105 .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:29105 .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-carboxylysine' .
?pfsb63 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
_:599969 a rdf:Statement ;
up:attribution _:599946 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:599970 a rdf:Statement ;
up:attribution _:599947 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:599971 a rdf:Statement ;
up:attribution _:599948 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:599972 a rdf:Statement ;
up:attribution _:599949 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:599973 a rdf:Statement ;
up:attribution _:599950 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:599974 a rdf:Statement ;
up:attribution _:599951 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:599975 a rdf:Statement ;
up:attribution _:599952 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:599976 a rdf:Statement ;
up:attribution _:599953 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:599977 a rdf:Statement ;
up:attribution _:599954 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:599978 a rdf:Statement ;
up:attribution _:599955 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:599979 a rdf:Statement ;
up:attribution _:599956 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:599980 a rdf:Statement ;
up:attribution _:599957 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:659 .
_:599981 a rdf:Statement ;
up:attribution _:599958 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:599982 a rdf:Statement ;
up:attribution _:599959 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004038 .
_:599983 a rdf:Statement ;
up:attribution _:599960 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000256 .
_:599984 a rdf:Statement ;
up:source unirule:MF_01645 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:599985 a rdf:Statement ;
up:attribution _:599961 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:599986 a rdf:Statement ;
up:source unirule:MF_01645 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:599987 a rdf:Statement ;
up:attribution _:599962 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:599988 a rdf:Statement ;
up:source unirule:MF_01645 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:599989 a rdf:Statement ;
up:attribution _:599963 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:599990 a rdf:Statement ;
up:source unirule:MF_01645 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:599991 a rdf:Statement ;
up:attribution _:599964 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:599992 a rdf:Statement ;
up:source unirule:MF_01645 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:599993 a rdf:Statement ;
up:attribution _:599965 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:599994 a rdf:Statement ;
up:source unirule:MF_01645 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:599995 a rdf:Statement ;
up:attribution _:599966 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:599996 a rdf:Statement ;
up:source unirule:MF_01645 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:599997 a rdf:Statement ;
up:attribution _:599967 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:599998 a rdf:Statement ;
up:source unirule:MF_01645 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:599999 a rdf:Statement ;
up:attribution _:599968 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01645
#Rule MF_01645 Created by:? on:2008-01-14 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01645 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01645a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01645a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01645a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01645a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01645a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01645a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01645a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01645a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01645a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch71 faldo:location ?templateMotifSequenceMatchRegionP7767172 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7767174 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77671MF_0164567 .
?templateMotifSequenceMatchRegionP7767172 faldo:begin ?templateMotifSequenceMatchBeginP7767173 .
?templateMotifSequenceMatchBeginP7767173 faldo:position ?templateMotifSequenceMatchBeginPositionP7767168 ;
faldo:reference isoform:P77671-1 .
?templateMotifSequenceProfileAlignmentOperationP7767174 edam:has_input signature:MF_01645 ;
rdf:type edam:operation_0300 .
?targetMotifMatch75 faldo:location ?targetMotifMatchRegionMatch76 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0164578 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77671MF_0164569 .
?targetMotifMatchRegionMatch76 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0164577 .
?targetMotifMatchRegionMatchBeginMF_0164577 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0164570 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0164578 edam:has_input signature:MF_01645 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77671MF_0164567, 1, (STRLEN(?templateMotifCigarP77671MF_0164567) - STRLEN(REPLACE(?templateMotifCigarP77671MF_0164567, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionP7767168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77671MF_0164569, 1, (STRLEN(?targetMotifMatchCigarP77671MF_0164569) - STRLEN(REPLACE(?targetMotifMatchCigarP77671MF_0164569, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77671MF_0164569, 1, (STRLEN(?targetMotifMatchCigarP77671MF_0164569) - STRLEN(REPLACE(?targetMotifMatchCigarP77671MF_0164569, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) .
BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0164570) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01645a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch86 faldo:location ?templateMotifSequenceMatchRegionP7767187 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7767189 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77671MF_0164582 .
?templateMotifSequenceMatchRegionP7767187 faldo:begin ?templateMotifSequenceMatchBeginP7767188 .
?templateMotifSequenceMatchBeginP7767188 faldo:position ?templateMotifSequenceMatchBeginPositionP7767183 ;
faldo:reference isoform:P77671-1 .
?templateMotifSequenceProfileAlignmentOperationP7767189 edam:has_input signature:MF_01645 ;
rdf:type edam:operation_0300 .
?targetMotifMatch90 faldo:location ?targetMotifMatchRegionMatch91 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0164593 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77671MF_0164584 .
?targetMotifMatchRegionMatch91 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0164592 .
?targetMotifMatchRegionMatchBeginMF_0164592 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0164585 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0164593 edam:has_input signature:MF_01645 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77671MF_0164582, 1, (STRLEN(?templateMotifCigarP77671MF_0164582) - STRLEN(REPLACE(?templateMotifCigarP77671MF_0164582, CONCAT('^(?:-*[^-]){', STR(((61 - ?templateMotifSequenceMatchBeginPositionP7767183) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77671MF_0164584, 1, (STRLEN(?targetMotifMatchCigarP77671MF_0164584) - STRLEN(REPLACE(?targetMotifMatchCigarP77671MF_0164584, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77671MF_0164584, 1, (STRLEN(?targetMotifMatchCigarP77671MF_0164584) - STRLEN(REPLACE(?targetMotifMatchCigarP77671MF_0164584, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) .
BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0164585) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01645a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch101 faldo:location ?templateMotifSequenceMatchRegionP77671102 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77671104 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77671MF_0164597 .
?templateMotifSequenceMatchRegionP77671102 faldo:begin ?templateMotifSequenceMatchBeginP77671103 .
?templateMotifSequenceMatchBeginP77671103 faldo:position ?templateMotifSequenceMatchBeginPositionP7767198 ;
faldo:reference isoform:P77671-1 .
?templateMotifSequenceProfileAlignmentOperationP77671104 edam:has_input signature:MF_01645 ;
rdf:type edam:operation_0300 .
?targetMotifMatch105 faldo:location ?targetMotifMatchRegionMatch106 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01645108 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77671MF_0164599 .
?targetMotifMatchRegionMatch106 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01645107 .
?targetMotifMatchRegionMatchBeginMF_01645107 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01645100 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01645108 edam:has_input signature:MF_01645 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77671MF_0164597, 1, (STRLEN(?templateMotifCigarP77671MF_0164597) - STRLEN(REPLACE(?templateMotifCigarP77671MF_0164597, CONCAT('^(?:-*[^-]){', STR(((146 - ?templateMotifSequenceMatchBeginPositionP7767198) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77671MF_0164599, 1, (STRLEN(?targetMotifMatchCigarP77671MF_0164599) - STRLEN(REPLACE(?targetMotifMatchCigarP77671MF_0164599, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77671MF_0164599, 1, (STRLEN(?targetMotifMatchCigarP77671MF_0164599) - STRLEN(REPLACE(?targetMotifMatchCigarP77671MF_0164599, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) .
BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_01645100) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01645a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch116 faldo:location ?templateMotifSequenceMatchRegionP77671117 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77671119 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77671MF_01645112 .
?templateMotifSequenceMatchRegionP77671117 faldo:begin ?templateMotifSequenceMatchBeginP77671118 .
?templateMotifSequenceMatchBeginP77671118 faldo:position ?templateMotifSequenceMatchBeginPositionP77671113 ;
faldo:reference isoform:P77671-1 .
?templateMotifSequenceProfileAlignmentOperationP77671119 edam:has_input signature:MF_01645 ;
rdf:type edam:operation_0300 .
?targetMotifMatch120 faldo:location ?targetMotifMatchRegionMatch121 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01645123 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77671MF_01645114 .
?targetMotifMatchRegionMatch121 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01645122 .
?targetMotifMatchRegionMatchBeginMF_01645122 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01645115 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01645123 edam:has_input signature:MF_01645 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77671MF_01645112, 1, (STRLEN(?templateMotifCigarP77671MF_01645112) - STRLEN(REPLACE(?templateMotifCigarP77671MF_01645112, CONCAT('^(?:-*[^-]){', STR(((146 - ?templateMotifSequenceMatchBeginPositionP77671113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77671MF_01645114, 1, (STRLEN(?targetMotifMatchCigarP77671MF_01645114) - STRLEN(REPLACE(?targetMotifMatchCigarP77671MF_01645114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77671MF_01645114, 1, (STRLEN(?targetMotifMatchCigarP77671MF_01645114) - STRLEN(REPLACE(?targetMotifMatchCigarP77671MF_01645114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) .
BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_01645115) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01645a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionP77671132 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77671134 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77671MF_01645127 .
?templateMotifSequenceMatchRegionP77671132 faldo:begin ?templateMotifSequenceMatchBeginP77671133 .
?templateMotifSequenceMatchBeginP77671133 faldo:position ?templateMotifSequenceMatchBeginPositionP77671128 ;
faldo:reference isoform:P77671-1 .
?templateMotifSequenceProfileAlignmentOperationP77671134 edam:has_input signature:MF_01645 ;
rdf:type edam:operation_0300 .
?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01645138 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77671MF_01645129 .
?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01645137 .
?targetMotifMatchRegionMatchBeginMF_01645137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01645130 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01645138 edam:has_input signature:MF_01645 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77671MF_01645127, 1, (STRLEN(?templateMotifCigarP77671MF_01645127) - STRLEN(REPLACE(?templateMotifCigarP77671MF_01645127, CONCAT('^(?:-*[^-]){', STR(((186 - ?templateMotifSequenceMatchBeginPositionP77671128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77671MF_01645129, 1, (STRLEN(?targetMotifMatchCigarP77671MF_01645129) - STRLEN(REPLACE(?targetMotifMatchCigarP77671MF_01645129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77671MF_01645129, 1, (STRLEN(?targetMotifMatchCigarP77671MF_01645129) - STRLEN(REPLACE(?targetMotifMatchCigarP77671MF_01645129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) .
BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_01645130) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t141) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01645a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch146 faldo:location ?templateMotifSequenceMatchRegionP77671147 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77671149 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77671MF_01645142 .
?templateMotifSequenceMatchRegionP77671147 faldo:begin ?templateMotifSequenceMatchBeginP77671148 .
?templateMotifSequenceMatchBeginP77671148 faldo:position ?templateMotifSequenceMatchBeginPositionP77671143 ;
faldo:reference isoform:P77671-1 .
?templateMotifSequenceProfileAlignmentOperationP77671149 edam:has_input signature:MF_01645 ;
rdf:type edam:operation_0300 .
?targetMotifMatch150 faldo:location ?targetMotifMatchRegionMatch151 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01645153 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77671MF_01645144 .
?targetMotifMatchRegionMatch151 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01645152 .
?targetMotifMatchRegionMatchBeginMF_01645152 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01645145 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01645153 edam:has_input signature:MF_01645 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77671MF_01645142, 1, (STRLEN(?templateMotifCigarP77671MF_01645142) - STRLEN(REPLACE(?templateMotifCigarP77671MF_01645142, CONCAT('^(?:-*[^-]){', STR(((242 - ?templateMotifSequenceMatchBeginPositionP77671143) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77671MF_01645144, 1, (STRLEN(?targetMotifMatchCigarP77671MF_01645144) - STRLEN(REPLACE(?targetMotifMatchCigarP77671MF_01645144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77671MF_01645144, 1, (STRLEN(?targetMotifMatchCigarP77671MF_01645144) - STRLEN(REPLACE(?targetMotifMatchCigarP77671MF_01645144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), '')))), '[^-]', ''))) AS ?step2155) .
BIND(((?step2155 + ?targetMotifMatchRegionMatchBeginPositionMF_01645145) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t156) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01645a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch161 faldo:location ?templateMotifSequenceMatchRegionP77671162 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77671164 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77671MF_01645157 .
?templateMotifSequenceMatchRegionP77671162 faldo:begin ?templateMotifSequenceMatchBeginP77671163 .
?templateMotifSequenceMatchBeginP77671163 faldo:position ?templateMotifSequenceMatchBeginPositionP77671158 ;
faldo:reference isoform:P77671-1 .
?templateMotifSequenceProfileAlignmentOperationP77671164 edam:has_input signature:MF_01645 ;
rdf:type edam:operation_0300 .
?targetMotifMatch165 faldo:location ?targetMotifMatchRegionMatch166 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01645168 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77671MF_01645159 .
?targetMotifMatchRegionMatch166 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01645167 .
?targetMotifMatchRegionMatchBeginMF_01645167 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01645160 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01645168 edam:has_input signature:MF_01645 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77671MF_01645157, 1, (STRLEN(?templateMotifCigarP77671MF_01645157) - STRLEN(REPLACE(?templateMotifCigarP77671MF_01645157, CONCAT('^(?:-*[^-]){', STR(((315 - ?templateMotifSequenceMatchBeginPositionP77671158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77671MF_01645159, 1, (STRLEN(?targetMotifMatchCigarP77671MF_01645159) - STRLEN(REPLACE(?targetMotifMatchCigarP77671MF_01645159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77671MF_01645159, 1, (STRLEN(?targetMotifMatchCigarP77671MF_01645159) - STRLEN(REPLACE(?targetMotifMatchCigarP77671MF_01645159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), '')))), '[^-]', ''))) AS ?step2170) .
BIND(((?step2170 + ?targetMotifMatchRegionMatchBeginPositionMF_01645160) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t171) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01645a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch176 faldo:location ?templateMotifSequenceMatchRegionP77671177 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77671179 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77671MF_01645172 .
?templateMotifSequenceMatchRegionP77671177 faldo:begin ?templateMotifSequenceMatchBeginP77671178 .
?templateMotifSequenceMatchBeginP77671178 faldo:position ?templateMotifSequenceMatchBeginPositionP77671173 ;
faldo:reference isoform:P77671-1 .
?templateMotifSequenceProfileAlignmentOperationP77671179 edam:has_input signature:MF_01645 ;
rdf:type edam:operation_0300 .
?targetMotifMatch180 faldo:location ?targetMotifMatchRegionMatch181 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01645183 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77671MF_01645174 .
?targetMotifMatchRegionMatch181 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01645182 .
?targetMotifMatchRegionMatchBeginMF_01645182 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01645175 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01645183 edam:has_input signature:MF_01645 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77671MF_01645172, 1, (STRLEN(?templateMotifCigarP77671MF_01645172) - STRLEN(REPLACE(?templateMotifCigarP77671MF_01645172, CONCAT('^(?:-*[^-]){', STR(((146 - ?templateMotifSequenceMatchBeginPositionP77671173) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77671MF_01645174, 1, (STRLEN(?targetMotifMatchCigarP77671MF_01645174) - STRLEN(REPLACE(?targetMotifMatchCigarP77671MF_01645174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77671MF_01645174, 1, (STRLEN(?targetMotifMatchCigarP77671MF_01645174) - STRLEN(REPLACE(?targetMotifMatchCigarP77671MF_01645174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), '')))), '[^-]', ''))) AS ?step2185) .
BIND(((?step2185 + ?targetMotifMatchRegionMatchBeginPositionMF_01645175) - 1) AS ?thisPositionOn65) .
BIND(?thisPositionOn65 AS ?thisPositionOn66) .
BIND(?this AS ?pfs1t186) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse64) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01645a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1386 .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1386 .
})) .
BIND(?this AS ?case11) .
}
}
"xsd:string |
