| http://purl.uniprot.org/unirules/MF_01658#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:605379 up:source unirule:MF_01658 .
_:605380 up:source unirule:MF_01658 .
_:605381 up:source unirule:MF_01658 .
_:605382 up:source unirule:MF_01658 .
_:605383 up:source unirule:MF_01658 .
_:605384 up:source unirule:MF_01658 .
_:605385 up:source unirule:MF_01658 .
_:605386 up:source unirule:MF_01658 .
_:605387 up:source unirule:MF_01658 .
_:605388 up:source unirule:MF_01658 .
_:605389 up:source unirule:MF_01658 .
_:605390 up:source unirule:MF_01658 .
_:605391 up:source unirule:MF_01658 .
_:605392 up:source unirule:MF_01658 .
_:605393 up:source unirule:MF_01658 .
_:605394 up:source unirule:MF_01658 .
_:605395 up:source unirule:MF_01658 .
_:605396 up:source unirule:MF_01658 .
_:605397 up:source unirule:MF_01658 .
_:605398 up:source unirule:MF_01658 .
_:605399 up:source unirule:MF_01658 .
_:605400 up:source unirule:MF_01658 .
_:605401 up:source unirule:MF_01658 .
_:605402 up:source unirule:MF_01658 .
_:605403 up:source unirule:MF_01658 .
_:605404 up:source unirule:MF_01658 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation10 ;
up:classifiedWith GO:0005886 ,
GO:0006744 ,
keyword:1003 ,
keyword:408 ,
keyword:472 ,
keyword:479 ,
keyword:503 ,
keyword:560 ,
keyword:831 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.14.99.60' ;
up:fullName '3-demethoxyubiquinol 3-hydroxylase' ;
up:shortName 'DMQ hydroxylase' ;
rdf:type up:Structured_Name .
?name1 up:fullName '2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'coq7' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol during ubiquinone biosynthesis.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:24875 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 iron ions per subunit.' .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; ubiquinone biosynthesis.' .
?annotation8 a up:Subcellular_Location_Annotation .
?annotation8li9 up:cellularComponent .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the COQ7 family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:24875 .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:24875 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:24875 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:24875 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:24875 .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf chebi:24875 .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf chebi:24875 .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
up:ligand ?ligand64 ;
rdf:type up:Binding_Site_Annotation .
?pfsb62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?ligand64 rdfs:subClassOf chebi:24875 .
_:605405 a rdf:Statement ;
up:attribution _:605379 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:605406 a rdf:Statement ;
up:attribution _:605380 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:605407 a rdf:Statement ;
up:attribution _:605381 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:605408 a rdf:Statement ;
up:attribution _:605382 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:605409 a rdf:Statement ;
up:attribution _:605383 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:605410 a rdf:Statement ;
up:attribution _:605384 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:605411 a rdf:Statement ;
up:attribution _:605385 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:605412 a rdf:Statement ;
up:attribution _:605386 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:605413 a rdf:Statement ;
up:attribution _:605387 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:605414 a rdf:Statement ;
up:attribution _:605388 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:605415 a rdf:Statement ;
up:attribution _:605389 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:605416 a rdf:Statement ;
up:attribution _:605390 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:605417 a rdf:Statement ;
up:attribution _:605391 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:605418 a rdf:Statement ;
up:attribution _:605392 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:503 .
_:605419 a rdf:Statement ;
up:attribution _:605393 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:605420 a rdf:Statement ;
up:attribution _:605394 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:831 .
_:605421 a rdf:Statement ;
up:attribution _:605395 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006744 .
_:605422 a rdf:Statement ;
up:attribution _:605396 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:605423 a rdf:Statement ;
up:source unirule:MF_01658 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:605424 a rdf:Statement ;
up:attribution _:605397 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:605425 a rdf:Statement ;
up:source unirule:MF_01658 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:605426 a rdf:Statement ;
up:attribution _:605398 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:605427 a rdf:Statement ;
up:source unirule:MF_01658 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:605428 a rdf:Statement ;
up:attribution _:605399 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:605429 a rdf:Statement ;
up:source unirule:MF_01658 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:605430 a rdf:Statement ;
up:attribution _:605400 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:605431 a rdf:Statement ;
up:source unirule:MF_01658 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:605432 a rdf:Statement ;
up:attribution _:605401 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:605433 a rdf:Statement ;
up:source unirule:MF_01658 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:605434 a rdf:Statement ;
up:attribution _:605402 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:605435 a rdf:Statement ;
up:source unirule:MF_01658 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:605436 a rdf:Statement ;
up:attribution _:605403 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:605437 a rdf:Statement ;
up:source unirule:MF_01658 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:605438 a rdf:Statement ;
up:attribution _:605404 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01658
#Rule MF_01658 Created by:? on:2008-05-07 Modified by:Elisabeth Coudert on:2024-10-10
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01658 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_01658a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01658a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01658a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01658a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01658a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01658a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01658a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01658a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch71 faldo:location ?templateMotifSequenceMatchRegionQ9I5R672 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I5R674 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I5R6MF_0165867 .
?templateMotifSequenceMatchRegionQ9I5R672 faldo:begin ?templateMotifSequenceMatchBeginQ9I5R673 .
?templateMotifSequenceMatchBeginQ9I5R673 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I5R668 ;
faldo:reference isoform:Q9I5R6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I5R674 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
?targetMotifMatch75 faldo:location ?targetMotifMatchRegionMatch76 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0165878 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I5R6MF_0165869 .
?targetMotifMatchRegionMatch76 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0165877 .
?targetMotifMatchRegionMatchBeginMF_0165877 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0165870 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0165878 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I5R6MF_0165867, 1, (STRLEN(?templateMotifCigarQ9I5R6MF_0165867) - STRLEN(REPLACE(?templateMotifCigarQ9I5R6MF_0165867, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionQ9I5R668) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_0165869, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_0165869) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_0165869, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_0165869, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_0165869) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_0165869, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) .
BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0165870) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01658a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch86 faldo:location ?templateMotifSequenceMatchRegionQ9I5R687 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I5R689 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I5R6MF_0165882 .
?templateMotifSequenceMatchRegionQ9I5R687 faldo:begin ?templateMotifSequenceMatchBeginQ9I5R688 .
?templateMotifSequenceMatchBeginQ9I5R688 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I5R683 ;
faldo:reference isoform:Q9I5R6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I5R689 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
?targetMotifMatch90 faldo:location ?targetMotifMatchRegionMatch91 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0165893 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I5R6MF_0165884 .
?targetMotifMatchRegionMatch91 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0165892 .
?targetMotifMatchRegionMatchBeginMF_0165892 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0165885 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0165893 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I5R6MF_0165882, 1, (STRLEN(?templateMotifCigarQ9I5R6MF_0165882) - STRLEN(REPLACE(?templateMotifCigarQ9I5R6MF_0165882, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionQ9I5R683) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_0165884, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_0165884) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_0165884, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_0165884, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_0165884) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_0165884, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) .
BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0165885) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01658a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch101 faldo:location ?templateMotifSequenceMatchRegionQ9I5R6102 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I5R6104 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I5R6MF_0165897 .
?templateMotifSequenceMatchRegionQ9I5R6102 faldo:begin ?templateMotifSequenceMatchBeginQ9I5R6103 .
?templateMotifSequenceMatchBeginQ9I5R6103 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I5R698 ;
faldo:reference isoform:Q9I5R6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I5R6104 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
?targetMotifMatch105 faldo:location ?targetMotifMatchRegionMatch106 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01658108 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I5R6MF_0165899 .
?targetMotifMatchRegionMatch106 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01658107 .
?targetMotifMatchRegionMatchBeginMF_01658107 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01658100 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01658108 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I5R6MF_0165897, 1, (STRLEN(?templateMotifCigarQ9I5R6MF_0165897) - STRLEN(REPLACE(?templateMotifCigarQ9I5R6MF_0165897, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionQ9I5R698) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_0165899, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_0165899) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_0165899, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_0165899, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_0165899) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_0165899, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) .
BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_01658100) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01658a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch116 faldo:location ?templateMotifSequenceMatchRegionQ9I5R6117 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I5R6119 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I5R6MF_01658112 .
?templateMotifSequenceMatchRegionQ9I5R6117 faldo:begin ?templateMotifSequenceMatchBeginQ9I5R6118 .
?templateMotifSequenceMatchBeginQ9I5R6118 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I5R6113 ;
faldo:reference isoform:Q9I5R6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I5R6119 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
?targetMotifMatch120 faldo:location ?targetMotifMatchRegionMatch121 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01658123 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I5R6MF_01658114 .
?targetMotifMatchRegionMatch121 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01658122 .
?targetMotifMatchRegionMatchBeginMF_01658122 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01658115 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01658123 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I5R6MF_01658112, 1, (STRLEN(?templateMotifCigarQ9I5R6MF_01658112) - STRLEN(REPLACE(?templateMotifCigarQ9I5R6MF_01658112, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionQ9I5R6113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658114, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658114) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658114, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658114) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) .
BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_01658115) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01658a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionQ9I5R6132 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I5R6134 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I5R6MF_01658127 .
?templateMotifSequenceMatchRegionQ9I5R6132 faldo:begin ?templateMotifSequenceMatchBeginQ9I5R6133 .
?templateMotifSequenceMatchBeginQ9I5R6133 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I5R6128 ;
faldo:reference isoform:Q9I5R6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I5R6134 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01658138 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I5R6MF_01658129 .
?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01658137 .
?targetMotifMatchRegionMatchBeginMF_01658137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01658130 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01658138 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I5R6MF_01658127, 1, (STRLEN(?templateMotifCigarQ9I5R6MF_01658127) - STRLEN(REPLACE(?templateMotifCigarQ9I5R6MF_01658127, CONCAT('^(?:-*[^-]){', STR(((146 - ?templateMotifSequenceMatchBeginPositionQ9I5R6128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658129, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658129) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658129, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658129) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) .
BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_01658130) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t141) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01658a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch146 faldo:location ?templateMotifSequenceMatchRegionQ9I5R6147 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I5R6149 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I5R6MF_01658142 .
?templateMotifSequenceMatchRegionQ9I5R6147 faldo:begin ?templateMotifSequenceMatchBeginQ9I5R6148 .
?templateMotifSequenceMatchBeginQ9I5R6148 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I5R6143 ;
faldo:reference isoform:Q9I5R6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I5R6149 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
?targetMotifMatch150 faldo:location ?targetMotifMatchRegionMatch151 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01658153 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I5R6MF_01658144 .
?targetMotifMatchRegionMatch151 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01658152 .
?targetMotifMatchRegionMatchBeginMF_01658152 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01658145 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01658153 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I5R6MF_01658142, 1, (STRLEN(?templateMotifCigarQ9I5R6MF_01658142) - STRLEN(REPLACE(?templateMotifCigarQ9I5R6MF_01658142, CONCAT('^(?:-*[^-]){', STR(((178 - ?templateMotifSequenceMatchBeginPositionQ9I5R6143) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658144, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658144) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658144, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658144) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), '')))), '[^-]', ''))) AS ?step2155) .
BIND(((?step2155 + ?targetMotifMatchRegionMatchBeginPositionMF_01658145) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t156) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01658a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch161 faldo:location ?templateMotifSequenceMatchRegionQ9I5R6162 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I5R6164 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I5R6MF_01658157 .
?templateMotifSequenceMatchRegionQ9I5R6162 faldo:begin ?templateMotifSequenceMatchBeginQ9I5R6163 .
?templateMotifSequenceMatchBeginQ9I5R6163 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I5R6158 ;
faldo:reference isoform:Q9I5R6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I5R6164 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
?targetMotifMatch165 faldo:location ?targetMotifMatchRegionMatch166 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01658168 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I5R6MF_01658159 .
?targetMotifMatchRegionMatch166 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01658167 .
?targetMotifMatchRegionMatchBeginMF_01658167 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01658160 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01658168 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I5R6MF_01658157, 1, (STRLEN(?templateMotifCigarQ9I5R6MF_01658157) - STRLEN(REPLACE(?templateMotifCigarQ9I5R6MF_01658157, CONCAT('^(?:-*[^-]){', STR(((178 - ?templateMotifSequenceMatchBeginPositionQ9I5R6158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658159, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658159) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658159, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658159) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), '')))), '[^-]', ''))) AS ?step2170) .
BIND(((?step2170 + ?targetMotifMatchRegionMatchBeginPositionMF_01658160) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t171) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01658a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch176 faldo:location ?templateMotifSequenceMatchRegionQ9I5R6177 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I5R6179 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I5R6MF_01658172 .
?templateMotifSequenceMatchRegionQ9I5R6177 faldo:begin ?templateMotifSequenceMatchBeginQ9I5R6178 .
?templateMotifSequenceMatchBeginQ9I5R6178 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I5R6173 ;
faldo:reference isoform:Q9I5R6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I5R6179 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
?targetMotifMatch180 faldo:location ?targetMotifMatchRegionMatch181 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01658183 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I5R6MF_01658174 .
?targetMotifMatchRegionMatch181 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01658182 .
?targetMotifMatchRegionMatchBeginMF_01658182 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01658175 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01658183 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I5R6MF_01658172, 1, (STRLEN(?templateMotifCigarQ9I5R6MF_01658172) - STRLEN(REPLACE(?templateMotifCigarQ9I5R6MF_01658172, CONCAT('^(?:-*[^-]){', STR(((181 - ?templateMotifSequenceMatchBeginPositionQ9I5R6173) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658174, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658174) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658174, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658174) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), '')))), '[^-]', ''))) AS ?step2185) .
BIND(((?step2185 + ?targetMotifMatchRegionMatchBeginPositionMF_01658175) - 1) AS ?thisPositionOn65) .
BIND(?thisPositionOn65 AS ?thisPositionOn66) .
BIND(?this AS ?pfs1t186) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01658a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
}
"xsd:string |
