| http://purl.uniprot.org/unirules/MF_01690#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:618070 up:source unirule:MF_01690 .
_:618071 up:source unirule:MF_01690 .
_:618072 up:source unirule:MF_01690 .
_:618073 up:source unirule:MF_01690 .
_:618074 up:source unirule:MF_01690 .
_:618075 up:source unirule:MF_01690 .
_:618076 up:source unirule:MF_01690 .
_:618077 up:source unirule:MF_01690 .
_:618078 up:source unirule:MF_01690 .
_:618079 up:source unirule:MF_01690 .
_:618080 up:source unirule:MF_01690 .
_:618081 up:source unirule:MF_01690 .
_:618082 up:source unirule:MF_01690 .
_:618083 up:source unirule:MF_01690 .
_:618084 up:source unirule:MF_01690 .
_:618085 up:source unirule:MF_01690 .
_:618086 up:source unirule:MF_01690 .
_:618087 up:source unirule:MF_01690 .
_:618088 up:source unirule:MF_01690 .
_:618089 up:source unirule:MF_01690 .
_:618090 up:source unirule:MF_01690 .
_:618091 up:source unirule:MF_01690 .
_:618092 up:source unirule:MF_01690 .
_:618093 up:source unirule:MF_01690 .
_:618094 up:source unirule:MF_01690 .
_:618095 up:source unirule:MF_01690 .
_:618096 up:source unirule:MF_01690 .
_:618097 up:source unirule:MF_01690 .
_:618098 up:source unirule:MF_01690 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0008270 ,
GO:0009014 ,
GO:0009089 ,
GO:0019877 ,
GO:0050897 ,
keyword:170 ,
keyword:220 ,
keyword:28 ,
keyword:378 ,
keyword:457 ,
keyword:479 ,
keyword:862 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.5.1.18' ;
up:fullName 'Succinyl-diaminopimelate desuccinylase' ;
up:shortName 'SDAP desuccinylase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'dapE' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminopimelate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:29105 ,
chebi:48828 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 Zn(2+) or Co(2+) ions per subunit.' .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; LL-2,6-diaminopimelate from (S)-tetrahydrodipicolinate (succinylase route): step 3/3.' .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the peptidase M20A family. DapE subfamily.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
rdf:type up:Active_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:29105 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:29105 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:29105 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:29105 .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:29105 .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf chebi:29105 .
_:618099 a rdf:Statement ;
up:attribution _:618070 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:618100 a rdf:Statement ;
up:attribution _:618071 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:618101 a rdf:Statement ;
up:attribution _:618072 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:618102 a rdf:Statement ;
up:attribution _:618073 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:618103 a rdf:Statement ;
up:attribution _:618074 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:618104 a rdf:Statement ;
up:attribution _:618075 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:618105 a rdf:Statement ;
up:attribution _:618076 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:618106 a rdf:Statement ;
up:attribution _:618077 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:618107 a rdf:Statement ;
up:attribution _:618078 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:618108 a rdf:Statement ;
up:attribution _:618079 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:618109 a rdf:Statement ;
up:attribution _:618080 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:170 .
_:618110 a rdf:Statement ;
up:attribution _:618081 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:220 .
_:618111 a rdf:Statement ;
up:attribution _:618082 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:618112 a rdf:Statement ;
up:attribution _:618083 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:457 .
_:618113 a rdf:Statement ;
up:attribution _:618084 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:618114 a rdf:Statement ;
up:attribution _:618085 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:618115 a rdf:Statement ;
up:attribution _:618086 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:618116 a rdf:Statement ;
up:attribution _:618087 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009014 .
_:618117 a rdf:Statement ;
up:attribution _:618088 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050897 .
_:618118 a rdf:Statement ;
up:attribution _:618089 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009089 .
_:618119 a rdf:Statement ;
up:attribution _:618090 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019877 .
_:618120 a rdf:Statement ;
up:source unirule:MF_01690 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:618121 a rdf:Statement ;
up:attribution _:618091 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:618122 a rdf:Statement ;
up:source unirule:MF_01690 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:618123 a rdf:Statement ;
up:attribution _:618092 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:618124 a rdf:Statement ;
up:source unirule:MF_01690 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:618125 a rdf:Statement ;
up:attribution _:618093 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:618126 a rdf:Statement ;
up:source unirule:MF_01690 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:618127 a rdf:Statement ;
up:attribution _:618094 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:618128 a rdf:Statement ;
up:source unirule:MF_01690 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:618129 a rdf:Statement ;
up:attribution _:618095 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:618130 a rdf:Statement ;
up:source unirule:MF_01690 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:618131 a rdf:Statement ;
up:attribution _:618096 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:618132 a rdf:Statement ;
up:source unirule:MF_01690 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:618133 a rdf:Statement ;
up:attribution _:618097 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:618134 a rdf:Statement ;
up:source unirule:MF_01690 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:618135 a rdf:Statement ;
up:attribution _:618098 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01690
#Rule MF_01690 Created by:? on:2009-04-22 Modified by:Elisabeth Coudert on:2025-01-09
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01690 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_01690a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01690a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01690a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01690a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01690a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01690a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01690a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01690a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch68 faldo:location ?templateMotifSequenceMatchRegionP4451469 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4451471 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP44514MF_0169064 .
?templateMotifSequenceMatchRegionP4451469 faldo:begin ?templateMotifSequenceMatchBeginP4451470 .
?templateMotifSequenceMatchBeginP4451470 faldo:position ?templateMotifSequenceMatchBeginPositionP4451465 ;
faldo:reference isoform:P44514-1 .
?templateMotifSequenceProfileAlignmentOperationP4451471 edam:has_input signature:MF_01690 ;
rdf:type edam:operation_0300 .
?targetMotifMatch72 faldo:location ?targetMotifMatchRegionMatch73 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0169075 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP44514MF_0169066 .
?targetMotifMatchRegionMatch73 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0169074 .
?targetMotifMatchRegionMatchBeginMF_0169074 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0169067 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0169075 edam:has_input signature:MF_01690 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44514MF_0169064, 1, (STRLEN(?templateMotifCigarP44514MF_0169064) - STRLEN(REPLACE(?templateMotifCigarP44514MF_0169064, CONCAT('^(?:-*[^-]){', STR(((69 - ?templateMotifSequenceMatchBeginPositionP4451465) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44514MF_0169066, 1, (STRLEN(?targetMotifMatchCigarP44514MF_0169066) - STRLEN(REPLACE(?targetMotifMatchCigarP44514MF_0169066, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44514MF_0169066, 1, (STRLEN(?targetMotifMatchCigarP44514MF_0169066) - STRLEN(REPLACE(?targetMotifMatchCigarP44514MF_0169066, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) .
BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0169067) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01690a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch83 faldo:location ?templateMotifSequenceMatchRegionP4451484 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4451486 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP44514MF_0169079 .
?templateMotifSequenceMatchRegionP4451484 faldo:begin ?templateMotifSequenceMatchBeginP4451485 .
?templateMotifSequenceMatchBeginP4451485 faldo:position ?templateMotifSequenceMatchBeginPositionP4451480 ;
faldo:reference isoform:P44514-1 .
?templateMotifSequenceProfileAlignmentOperationP4451486 edam:has_input signature:MF_01690 ;
rdf:type edam:operation_0300 .
?targetMotifMatch87 faldo:location ?targetMotifMatchRegionMatch88 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0169090 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP44514MF_0169081 .
?targetMotifMatchRegionMatch88 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0169089 .
?targetMotifMatchRegionMatchBeginMF_0169089 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0169082 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0169090 edam:has_input signature:MF_01690 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44514MF_0169079, 1, (STRLEN(?templateMotifCigarP44514MF_0169079) - STRLEN(REPLACE(?templateMotifCigarP44514MF_0169079, CONCAT('^(?:-*[^-]){', STR(((134 - ?templateMotifSequenceMatchBeginPositionP4451480) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44514MF_0169081, 1, (STRLEN(?targetMotifMatchCigarP44514MF_0169081) - STRLEN(REPLACE(?targetMotifMatchCigarP44514MF_0169081, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44514MF_0169081, 1, (STRLEN(?targetMotifMatchCigarP44514MF_0169081) - STRLEN(REPLACE(?targetMotifMatchCigarP44514MF_0169081, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0169082) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01690a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionP4451499 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP44514101 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP44514MF_0169094 .
?templateMotifSequenceMatchRegionP4451499 faldo:begin ?templateMotifSequenceMatchBeginP44514100 .
?templateMotifSequenceMatchBeginP44514100 faldo:position ?templateMotifSequenceMatchBeginPositionP4451495 ;
faldo:reference isoform:P44514-1 .
?templateMotifSequenceProfileAlignmentOperationP44514101 edam:has_input signature:MF_01690 ;
rdf:type edam:operation_0300 .
?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01690105 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP44514MF_0169096 .
?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01690104 .
?targetMotifMatchRegionMatchBeginMF_01690104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0169097 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01690105 edam:has_input signature:MF_01690 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44514MF_0169094, 1, (STRLEN(?templateMotifCigarP44514MF_0169094) - STRLEN(REPLACE(?templateMotifCigarP44514MF_0169094, CONCAT('^(?:-*[^-]){', STR(((67 - ?templateMotifSequenceMatchBeginPositionP4451495) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44514MF_0169096, 1, (STRLEN(?targetMotifMatchCigarP44514MF_0169096) - STRLEN(REPLACE(?targetMotifMatchCigarP44514MF_0169096, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44514MF_0169096, 1, (STRLEN(?targetMotifMatchCigarP44514MF_0169096) - STRLEN(REPLACE(?targetMotifMatchCigarP44514MF_0169096, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0169097) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01690a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionP44514114 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP44514116 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP44514MF_01690109 .
?templateMotifSequenceMatchRegionP44514114 faldo:begin ?templateMotifSequenceMatchBeginP44514115 .
?templateMotifSequenceMatchBeginP44514115 faldo:position ?templateMotifSequenceMatchBeginPositionP44514110 ;
faldo:reference isoform:P44514-1 .
?templateMotifSequenceProfileAlignmentOperationP44514116 edam:has_input signature:MF_01690 ;
rdf:type edam:operation_0300 .
?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01690120 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP44514MF_01690111 .
?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01690119 .
?targetMotifMatchRegionMatchBeginMF_01690119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01690112 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01690120 edam:has_input signature:MF_01690 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44514MF_01690109, 1, (STRLEN(?templateMotifCigarP44514MF_01690109) - STRLEN(REPLACE(?templateMotifCigarP44514MF_01690109, CONCAT('^(?:-*[^-]){', STR(((100 - ?templateMotifSequenceMatchBeginPositionP44514110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44514MF_01690111, 1, (STRLEN(?targetMotifMatchCigarP44514MF_01690111) - STRLEN(REPLACE(?targetMotifMatchCigarP44514MF_01690111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44514MF_01690111, 1, (STRLEN(?targetMotifMatchCigarP44514MF_01690111) - STRLEN(REPLACE(?targetMotifMatchCigarP44514MF_01690111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) .
BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_01690112) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01690a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch128 faldo:location ?templateMotifSequenceMatchRegionP44514129 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP44514131 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP44514MF_01690124 .
?templateMotifSequenceMatchRegionP44514129 faldo:begin ?templateMotifSequenceMatchBeginP44514130 .
?templateMotifSequenceMatchBeginP44514130 faldo:position ?templateMotifSequenceMatchBeginPositionP44514125 ;
faldo:reference isoform:P44514-1 .
?templateMotifSequenceProfileAlignmentOperationP44514131 edam:has_input signature:MF_01690 ;
rdf:type edam:operation_0300 .
?targetMotifMatch132 faldo:location ?targetMotifMatchRegionMatch133 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01690135 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP44514MF_01690126 .
?targetMotifMatchRegionMatch133 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01690134 .
?targetMotifMatchRegionMatchBeginMF_01690134 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01690127 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01690135 edam:has_input signature:MF_01690 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44514MF_01690124, 1, (STRLEN(?templateMotifCigarP44514MF_01690124) - STRLEN(REPLACE(?templateMotifCigarP44514MF_01690124, CONCAT('^(?:-*[^-]){', STR(((100 - ?templateMotifSequenceMatchBeginPositionP44514125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44514MF_01690126, 1, (STRLEN(?targetMotifMatchCigarP44514MF_01690126) - STRLEN(REPLACE(?targetMotifMatchCigarP44514MF_01690126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44514MF_01690126, 1, (STRLEN(?targetMotifMatchCigarP44514MF_01690126) - STRLEN(REPLACE(?targetMotifMatchCigarP44514MF_01690126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) .
BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_01690127) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t138) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01690a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch143 faldo:location ?templateMotifSequenceMatchRegionP44514144 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP44514146 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP44514MF_01690139 .
?templateMotifSequenceMatchRegionP44514144 faldo:begin ?templateMotifSequenceMatchBeginP44514145 .
?templateMotifSequenceMatchBeginP44514145 faldo:position ?templateMotifSequenceMatchBeginPositionP44514140 ;
faldo:reference isoform:P44514-1 .
?templateMotifSequenceProfileAlignmentOperationP44514146 edam:has_input signature:MF_01690 ;
rdf:type edam:operation_0300 .
?targetMotifMatch147 faldo:location ?targetMotifMatchRegionMatch148 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01690150 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP44514MF_01690141 .
?targetMotifMatchRegionMatch148 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01690149 .
?targetMotifMatchRegionMatchBeginMF_01690149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01690142 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01690150 edam:has_input signature:MF_01690 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44514MF_01690139, 1, (STRLEN(?templateMotifCigarP44514MF_01690139) - STRLEN(REPLACE(?templateMotifCigarP44514MF_01690139, CONCAT('^(?:-*[^-]){', STR(((135 - ?templateMotifSequenceMatchBeginPositionP44514140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44514MF_01690141, 1, (STRLEN(?targetMotifMatchCigarP44514MF_01690141) - STRLEN(REPLACE(?targetMotifMatchCigarP44514MF_01690141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44514MF_01690141, 1, (STRLEN(?targetMotifMatchCigarP44514MF_01690141) - STRLEN(REPLACE(?targetMotifMatchCigarP44514MF_01690141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) .
BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_01690142) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t153) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01690a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch158 faldo:location ?templateMotifSequenceMatchRegionP44514159 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP44514161 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP44514MF_01690154 .
?templateMotifSequenceMatchRegionP44514159 faldo:begin ?templateMotifSequenceMatchBeginP44514160 .
?templateMotifSequenceMatchBeginP44514160 faldo:position ?templateMotifSequenceMatchBeginPositionP44514155 ;
faldo:reference isoform:P44514-1 .
?templateMotifSequenceProfileAlignmentOperationP44514161 edam:has_input signature:MF_01690 ;
rdf:type edam:operation_0300 .
?targetMotifMatch162 faldo:location ?targetMotifMatchRegionMatch163 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01690165 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP44514MF_01690156 .
?targetMotifMatchRegionMatch163 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01690164 .
?targetMotifMatchRegionMatchBeginMF_01690164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01690157 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01690165 edam:has_input signature:MF_01690 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44514MF_01690154, 1, (STRLEN(?templateMotifCigarP44514MF_01690154) - STRLEN(REPLACE(?templateMotifCigarP44514MF_01690154, CONCAT('^(?:-*[^-]){', STR(((163 - ?templateMotifSequenceMatchBeginPositionP44514155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44514MF_01690156, 1, (STRLEN(?targetMotifMatchCigarP44514MF_01690156) - STRLEN(REPLACE(?targetMotifMatchCigarP44514MF_01690156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44514MF_01690156, 1, (STRLEN(?targetMotifMatchCigarP44514MF_01690156) - STRLEN(REPLACE(?targetMotifMatchCigarP44514MF_01690156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) .
BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_01690157) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t168) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01690a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch173 faldo:location ?templateMotifSequenceMatchRegionP44514174 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP44514176 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP44514MF_01690169 .
?templateMotifSequenceMatchRegionP44514174 faldo:begin ?templateMotifSequenceMatchBeginP44514175 .
?templateMotifSequenceMatchBeginP44514175 faldo:position ?templateMotifSequenceMatchBeginPositionP44514170 ;
faldo:reference isoform:P44514-1 .
?templateMotifSequenceProfileAlignmentOperationP44514176 edam:has_input signature:MF_01690 ;
rdf:type edam:operation_0300 .
?targetMotifMatch177 faldo:location ?targetMotifMatchRegionMatch178 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01690180 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP44514MF_01690171 .
?targetMotifMatchRegionMatch178 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01690179 .
?targetMotifMatchRegionMatchBeginMF_01690179 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01690172 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01690180 edam:has_input signature:MF_01690 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44514MF_01690169, 1, (STRLEN(?templateMotifCigarP44514MF_01690169) - STRLEN(REPLACE(?templateMotifCigarP44514MF_01690169, CONCAT('^(?:-*[^-]){', STR(((349 - ?templateMotifSequenceMatchBeginPositionP44514170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44514MF_01690171, 1, (STRLEN(?targetMotifMatchCigarP44514MF_01690171) - STRLEN(REPLACE(?targetMotifMatchCigarP44514MF_01690171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44514MF_01690171, 1, (STRLEN(?targetMotifMatchCigarP44514MF_01690171) - STRLEN(REPLACE(?targetMotifMatchCigarP44514MF_01690171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) .
BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_01690172) - 1) AS ?thisPositionOn62) .
BIND(?thisPositionOn62 AS ?thisPositionOn63) .
BIND(?this AS ?pfs1t183) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01690a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
}
"xsd:string |
