| http://purl.uniprot.org/unirules/MF_01693#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:619137 up:source unirule:MF_01693 .
_:619138 up:source unirule:MF_01693 .
_:619139 up:source unirule:MF_01693 .
_:619140 up:source unirule:MF_01693 .
_:619141 up:source unirule:MF_01693 .
_:619142 up:source unirule:MF_01693 .
_:619143 up:source unirule:MF_01693 .
_:619144 up:source unirule:MF_01693 .
_:619145 up:source unirule:MF_01693 .
_:619146 up:source unirule:MF_01693 .
_:619147 up:source unirule:MF_01693 .
_:619148 up:source unirule:MF_01693 .
_:619149 up:source unirule:MF_01693 .
_:619150 up:source unirule:MF_01693 .
_:619151 up:source unirule:MF_01693 .
_:619152 up:source unirule:MF_01693 .
_:619153 up:source unirule:MF_01693 .
_:619154 up:source unirule:MF_01693 .
_:619155 up:source unirule:MF_01693 .
_:619156 up:source unirule:MF_01693 .
_:619157 up:source unirule:MF_01693 .
_:619158 up:source unirule:MF_01693 .
_:619159 up:source unirule:MF_01693 .
_:619160 up:source unirule:MF_01693 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0008710 ,
GO:0009102 ,
GO:0030170 ,
keyword:663 ,
keyword:808 ,
keyword:93 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.3.1.47' ;
up:fullName '8-amino-7-oxononanoate synthase' ;
up:shortName 'AONS' ;
rdf:type up:Structured_Name .
?name1 up:fullName '7-keto-8-amino-pelargonic acid synthase' ;
up:shortName '7-KAP synthase' ,
'KAPA synthase' ;
rdf:type up:Structured_Name .
?name2 up:fullName '8-amino-7-ketopelargonate synthase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'bioF' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the decarboxylative condensation of pimeloyl-[acyl-carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:597326 ;
rdf:type up:Cofactor_Annotation .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; biotin biosynthesis.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. BioF subfamily.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:597326 .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf ?molecule23 .
?molecule23 rdfs:label 'substrate' .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf ?molecule31 .
?molecule31 rdfs:label 'substrate' .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand38 rdfs:subClassOf chebi:597326 .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf chebi:597326 .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
up:ligand ?ligand52 ;
rdf:type up:Binding_Site_Annotation .
?pfsb50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand52 rdfs:subClassOf chebi:597326 .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
up:ligand ?ligand59 ;
rdf:type up:Binding_Site_Annotation .
?pfsb57 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand59 rdfs:subClassOf ?molecule60 .
?molecule60 rdfs:label 'substrate' .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-(pyridoxal phosphate)lysine' .
?pfsb65 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
_:619161 a rdf:Statement ;
up:attribution _:619137 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:619162 a rdf:Statement ;
up:attribution _:619138 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:619163 a rdf:Statement ;
up:attribution _:619139 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:619164 a rdf:Statement ;
up:attribution _:619140 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:619165 a rdf:Statement ;
up:attribution _:619141 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:619166 a rdf:Statement ;
up:attribution _:619142 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:619167 a rdf:Statement ;
up:attribution _:619143 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:619168 a rdf:Statement ;
up:attribution _:619144 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:619169 a rdf:Statement ;
up:attribution _:619145 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:619170 a rdf:Statement ;
up:attribution _:619146 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:619171 a rdf:Statement ;
up:attribution _:619147 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:93 .
_:619172 a rdf:Statement ;
up:attribution _:619148 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:663 .
_:619173 a rdf:Statement ;
up:attribution _:619149 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:619174 a rdf:Statement ;
up:attribution _:619150 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008710 .
_:619175 a rdf:Statement ;
up:attribution _:619151 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030170 .
_:619176 a rdf:Statement ;
up:attribution _:619152 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009102 .
_:619177 a rdf:Statement ;
up:source unirule:MF_01693 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:619178 a rdf:Statement ;
up:attribution _:619153 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:619179 a rdf:Statement ;
up:source unirule:MF_01693 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:619180 a rdf:Statement ;
up:attribution _:619154 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:619181 a rdf:Statement ;
up:source unirule:MF_01693 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:619182 a rdf:Statement ;
up:attribution _:619155 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:619183 a rdf:Statement ;
up:source unirule:MF_01693 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:619184 a rdf:Statement ;
up:attribution _:619156 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:619185 a rdf:Statement ;
up:source unirule:MF_01693 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:619186 a rdf:Statement ;
up:attribution _:619157 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:619187 a rdf:Statement ;
up:source unirule:MF_01693 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:619188 a rdf:Statement ;
up:attribution _:619158 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:619189 a rdf:Statement ;
up:source unirule:MF_01693 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:619190 a rdf:Statement ;
up:attribution _:619159 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:619191 a rdf:Statement ;
up:source unirule:MF_01693 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:619192 a rdf:Statement ;
up:attribution _:619160 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01693
#Rule MF_01693 Created by:? on:2009-07-01 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01693 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_01693a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01693a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01693a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01693a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01693a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01693a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01693a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01693a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01693a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch73 faldo:location ?templateMotifSequenceMatchRegionP1299874 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1299876 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12998MF_0169369 .
?templateMotifSequenceMatchRegionP1299874 faldo:begin ?templateMotifSequenceMatchBeginP1299875 .
?templateMotifSequenceMatchBeginP1299875 faldo:position ?templateMotifSequenceMatchBeginPositionP1299870 ;
faldo:reference isoform:P12998-1 .
?templateMotifSequenceProfileAlignmentOperationP1299876 edam:has_input signature:MF_01693 ;
rdf:type edam:operation_0300 .
?targetMotifMatch77 faldo:location ?targetMotifMatchRegionMatch78 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0169380 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12998MF_0169371 .
?targetMotifMatchRegionMatch78 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0169379 .
?targetMotifMatchRegionMatchBeginMF_0169379 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0169372 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0169380 edam:has_input signature:MF_01693 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12998MF_0169369, 1, (STRLEN(?templateMotifCigarP12998MF_0169369) - STRLEN(REPLACE(?templateMotifCigarP12998MF_0169369, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionP1299870) + 1)), '}'), '')))), '[a-z]', '')) AS ?step181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12998MF_0169371, 1, (STRLEN(?targetMotifMatchCigarP12998MF_0169371) - STRLEN(REPLACE(?targetMotifMatchCigarP12998MF_0169371, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12998MF_0169371, 1, (STRLEN(?targetMotifMatchCigarP12998MF_0169371) - STRLEN(REPLACE(?targetMotifMatchCigarP12998MF_0169371, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), '')))), '[^-]', ''))) AS ?step282) .
BIND(((?step282 + ?targetMotifMatchRegionMatchBeginPositionMF_0169372) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12998MF_0169369, 1, (STRLEN(?templateMotifCigarP12998MF_0169369) - STRLEN(REPLACE(?templateMotifCigarP12998MF_0169369, CONCAT('^(?:-*[^-]){', STR(((109 - ?templateMotifSequenceMatchBeginPositionP1299870) + 1)), '}'), '')))), '[a-z]', '')) AS ?step183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12998MF_0169371, 1, (STRLEN(?targetMotifMatchCigarP12998MF_0169371) - STRLEN(REPLACE(?targetMotifMatchCigarP12998MF_0169371, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12998MF_0169371, 1, (STRLEN(?targetMotifMatchCigarP12998MF_0169371) - STRLEN(REPLACE(?targetMotifMatchCigarP12998MF_0169371, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), '')))), '[^-]', ''))) AS ?step284) .
BIND(((?step284 + ?targetMotifMatchRegionMatchBeginPositionMF_0169372) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t85) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER (REGEX('G[FY]', SUBSTR(?thisSequenceValue, ?thisPositionOn16, (?thisPositionOn17 - ?thisPositionOn16)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01693a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch90 faldo:location ?templateMotifSequenceMatchRegionP1299891 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1299893 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12998MF_0169386 .
?templateMotifSequenceMatchRegionP1299891 faldo:begin ?templateMotifSequenceMatchBeginP1299892 .
?templateMotifSequenceMatchBeginP1299892 faldo:position ?templateMotifSequenceMatchBeginPositionP1299887 ;
faldo:reference isoform:P12998-1 .
?templateMotifSequenceProfileAlignmentOperationP1299893 edam:has_input signature:MF_01693 ;
rdf:type edam:operation_0300 .
?targetMotifMatch94 faldo:location ?targetMotifMatchRegionMatch95 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0169397 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12998MF_0169388 .
?targetMotifMatchRegionMatch95 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0169396 .
?targetMotifMatchRegionMatchBeginMF_0169396 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0169389 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0169397 edam:has_input signature:MF_01693 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12998MF_0169386, 1, (STRLEN(?templateMotifCigarP12998MF_0169386) - STRLEN(REPLACE(?templateMotifCigarP12998MF_0169386, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionP1299887) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12998MF_0169388, 1, (STRLEN(?targetMotifMatchCigarP12998MF_0169388) - STRLEN(REPLACE(?targetMotifMatchCigarP12998MF_0169388, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12998MF_0169388, 1, (STRLEN(?targetMotifMatchCigarP12998MF_0169388) - STRLEN(REPLACE(?targetMotifMatchCigarP12998MF_0169388, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) .
BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0169389) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01693a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionP12998106 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12998108 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12998MF_01693101 .
?templateMotifSequenceMatchRegionP12998106 faldo:begin ?templateMotifSequenceMatchBeginP12998107 .
?templateMotifSequenceMatchBeginP12998107 faldo:position ?templateMotifSequenceMatchBeginPositionP12998102 ;
faldo:reference isoform:P12998-1 .
?templateMotifSequenceProfileAlignmentOperationP12998108 edam:has_input signature:MF_01693 ;
rdf:type edam:operation_0300 .
?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01693112 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12998MF_01693103 .
?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01693111 .
?targetMotifMatchRegionMatchBeginMF_01693111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01693104 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01693112 edam:has_input signature:MF_01693 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12998MF_01693101, 1, (STRLEN(?templateMotifCigarP12998MF_01693101) - STRLEN(REPLACE(?templateMotifCigarP12998MF_01693101, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionP12998102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12998MF_01693103, 1, (STRLEN(?targetMotifMatchCigarP12998MF_01693103) - STRLEN(REPLACE(?targetMotifMatchCigarP12998MF_01693103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12998MF_01693103, 1, (STRLEN(?targetMotifMatchCigarP12998MF_01693103) - STRLEN(REPLACE(?targetMotifMatchCigarP12998MF_01693103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) .
BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_01693104) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t115) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01693a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch120 faldo:location ?templateMotifSequenceMatchRegionP12998121 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12998123 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12998MF_01693116 .
?templateMotifSequenceMatchRegionP12998121 faldo:begin ?templateMotifSequenceMatchBeginP12998122 .
?templateMotifSequenceMatchBeginP12998122 faldo:position ?templateMotifSequenceMatchBeginPositionP12998117 ;
faldo:reference isoform:P12998-1 .
?templateMotifSequenceProfileAlignmentOperationP12998123 edam:has_input signature:MF_01693 ;
rdf:type edam:operation_0300 .
?targetMotifMatch124 faldo:location ?targetMotifMatchRegionMatch125 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01693127 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12998MF_01693118 .
?targetMotifMatchRegionMatch125 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01693126 .
?targetMotifMatchRegionMatchBeginMF_01693126 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01693119 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01693127 edam:has_input signature:MF_01693 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12998MF_01693116, 1, (STRLEN(?templateMotifCigarP12998MF_01693116) - STRLEN(REPLACE(?templateMotifCigarP12998MF_01693116, CONCAT('^(?:-*[^-]){', STR(((179 - ?templateMotifSequenceMatchBeginPositionP12998117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12998MF_01693118, 1, (STRLEN(?targetMotifMatchCigarP12998MF_01693118) - STRLEN(REPLACE(?targetMotifMatchCigarP12998MF_01693118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12998MF_01693118, 1, (STRLEN(?targetMotifMatchCigarP12998MF_01693118) - STRLEN(REPLACE(?targetMotifMatchCigarP12998MF_01693118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) .
BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_01693119) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01693a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch135 faldo:location ?templateMotifSequenceMatchRegionP12998136 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12998138 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12998MF_01693131 .
?templateMotifSequenceMatchRegionP12998136 faldo:begin ?templateMotifSequenceMatchBeginP12998137 .
?templateMotifSequenceMatchBeginP12998137 faldo:position ?templateMotifSequenceMatchBeginPositionP12998132 ;
faldo:reference isoform:P12998-1 .
?templateMotifSequenceProfileAlignmentOperationP12998138 edam:has_input signature:MF_01693 ;
rdf:type edam:operation_0300 .
?targetMotifMatch139 faldo:location ?targetMotifMatchRegionMatch140 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01693142 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12998MF_01693133 .
?targetMotifMatchRegionMatch140 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01693141 .
?targetMotifMatchRegionMatchBeginMF_01693141 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01693134 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01693142 edam:has_input signature:MF_01693 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12998MF_01693131, 1, (STRLEN(?templateMotifCigarP12998MF_01693131) - STRLEN(REPLACE(?templateMotifCigarP12998MF_01693131, CONCAT('^(?:-*[^-]){', STR(((207 - ?templateMotifSequenceMatchBeginPositionP12998132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12998MF_01693133, 1, (STRLEN(?targetMotifMatchCigarP12998MF_01693133) - STRLEN(REPLACE(?targetMotifMatchCigarP12998MF_01693133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12998MF_01693133, 1, (STRLEN(?targetMotifMatchCigarP12998MF_01693133) - STRLEN(REPLACE(?targetMotifMatchCigarP12998MF_01693133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) .
BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_01693134) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t145) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01693a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch150 faldo:location ?templateMotifSequenceMatchRegionP12998151 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12998153 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12998MF_01693146 .
?templateMotifSequenceMatchRegionP12998151 faldo:begin ?templateMotifSequenceMatchBeginP12998152 .
?templateMotifSequenceMatchBeginP12998152 faldo:position ?templateMotifSequenceMatchBeginPositionP12998147 ;
faldo:reference isoform:P12998-1 .
?templateMotifSequenceProfileAlignmentOperationP12998153 edam:has_input signature:MF_01693 ;
rdf:type edam:operation_0300 .
?targetMotifMatch154 faldo:location ?targetMotifMatchRegionMatch155 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01693157 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12998MF_01693148 .
?targetMotifMatchRegionMatch155 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01693156 .
?targetMotifMatchRegionMatchBeginMF_01693156 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01693149 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01693157 edam:has_input signature:MF_01693 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12998MF_01693146, 1, (STRLEN(?templateMotifCigarP12998MF_01693146) - STRLEN(REPLACE(?templateMotifCigarP12998MF_01693146, CONCAT('^(?:-*[^-]){', STR(((233 - ?templateMotifSequenceMatchBeginPositionP12998147) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12998MF_01693148, 1, (STRLEN(?targetMotifMatchCigarP12998MF_01693148) - STRLEN(REPLACE(?targetMotifMatchCigarP12998MF_01693148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12998MF_01693148, 1, (STRLEN(?targetMotifMatchCigarP12998MF_01693148) - STRLEN(REPLACE(?targetMotifMatchCigarP12998MF_01693148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) .
BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_01693149) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t160) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01693a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch165 faldo:location ?templateMotifSequenceMatchRegionP12998166 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12998168 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12998MF_01693161 .
?templateMotifSequenceMatchRegionP12998166 faldo:begin ?templateMotifSequenceMatchBeginP12998167 .
?templateMotifSequenceMatchBeginP12998167 faldo:position ?templateMotifSequenceMatchBeginPositionP12998162 ;
faldo:reference isoform:P12998-1 .
?templateMotifSequenceProfileAlignmentOperationP12998168 edam:has_input signature:MF_01693 ;
rdf:type edam:operation_0300 .
?targetMotifMatch169 faldo:location ?targetMotifMatchRegionMatch170 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01693172 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12998MF_01693163 .
?targetMotifMatchRegionMatch170 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01693171 .
?targetMotifMatchRegionMatchBeginMF_01693171 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01693164 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01693172 edam:has_input signature:MF_01693 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12998MF_01693161, 1, (STRLEN(?templateMotifCigarP12998MF_01693161) - STRLEN(REPLACE(?templateMotifCigarP12998MF_01693161, CONCAT('^(?:-*[^-]){', STR(((352 - ?templateMotifSequenceMatchBeginPositionP12998162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12998MF_01693163, 1, (STRLEN(?targetMotifMatchCigarP12998MF_01693163) - STRLEN(REPLACE(?targetMotifMatchCigarP12998MF_01693163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12998MF_01693163, 1, (STRLEN(?targetMotifMatchCigarP12998MF_01693163) - STRLEN(REPLACE(?targetMotifMatchCigarP12998MF_01693163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) .
BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_01693164) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs1t175) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse58) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01693a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch180 faldo:location ?templateMotifSequenceMatchRegionP12998181 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12998183 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12998MF_01693176 .
?templateMotifSequenceMatchRegionP12998181 faldo:begin ?templateMotifSequenceMatchBeginP12998182 .
?templateMotifSequenceMatchBeginP12998182 faldo:position ?templateMotifSequenceMatchBeginPositionP12998177 ;
faldo:reference isoform:P12998-1 .
?templateMotifSequenceProfileAlignmentOperationP12998183 edam:has_input signature:MF_01693 ;
rdf:type edam:operation_0300 .
?targetMotifMatch184 faldo:location ?targetMotifMatchRegionMatch185 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01693187 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12998MF_01693178 .
?targetMotifMatchRegionMatch185 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01693186 .
?targetMotifMatchRegionMatchBeginMF_01693186 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01693179 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01693187 edam:has_input signature:MF_01693 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12998MF_01693176, 1, (STRLEN(?templateMotifCigarP12998MF_01693176) - STRLEN(REPLACE(?templateMotifCigarP12998MF_01693176, CONCAT('^(?:-*[^-]){', STR(((236 - ?templateMotifSequenceMatchBeginPositionP12998177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12998MF_01693178, 1, (STRLEN(?targetMotifMatchCigarP12998MF_01693178) - STRLEN(REPLACE(?targetMotifMatchCigarP12998MF_01693178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12998MF_01693178, 1, (STRLEN(?targetMotifMatchCigarP12998MF_01693178) - STRLEN(REPLACE(?targetMotifMatchCigarP12998MF_01693178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), '')))), '[^-]', ''))) AS ?step2189) .
BIND(((?step2189 + ?targetMotifMatchRegionMatchBeginPositionMF_01693179) - 1) AS ?thisPositionOn67) .
BIND(?thisPositionOn67 AS ?thisPositionOn68) .
BIND(?this AS ?pfs1t190) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse66) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01693a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
}
"xsd:string |
