| http://purl.uniprot.org/unirules/MF_01694#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:619686 up:source unirule:MF_01694 .
_:619687 up:source unirule:MF_01694 .
_:619688 up:source unirule:MF_01694 .
_:619689 up:source unirule:MF_01694 .
_:619690 up:source unirule:MF_01694 .
_:619691 up:source unirule:MF_01694 .
_:619692 up:source unirule:MF_01694 .
_:619693 up:source unirule:MF_01694 .
_:619694 up:source unirule:MF_01694 .
_:619695 up:source unirule:MF_01694 .
_:619696 up:source unirule:MF_01694 .
_:619697 up:source unirule:MF_01694 .
_:619698 up:source unirule:MF_01694 .
_:619699 up:source unirule:MF_01694 .
_:619700 up:source unirule:MF_01694 .
_:619701 up:source unirule:MF_01694 .
_:619702 up:source unirule:MF_01694 .
_:619703 up:source unirule:MF_01694 .
_:619704 up:source unirule:MF_01694 .
_:619705 up:source unirule:MF_01694 .
_:619706 up:source unirule:MF_01694 .
_:619707 up:source unirule:MF_01694 .
_:619708 up:source unirule:MF_01694 .
_:619709 up:source unirule:MF_01694 .
_:619710 up:source unirule:MF_01694 .
_:619711 up:source unirule:MF_01694 .
_:619712 up:source unirule:MF_01694 .
_:619713 up:source unirule:MF_01694 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0004076 ,
GO:0005506 ,
GO:0009102 ,
GO:0051536 ,
keyword:1 ,
keyword:408 ,
keyword:411 ,
keyword:479 ,
keyword:4 ,
keyword:808 ,
keyword:93 ,
keyword:949 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.8.1.6' ;
up:fullName 'Biotin synthase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'bioB' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:49883 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.' .
?annotation6 up:cofactor chebi:190135 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 [2Fe-2S] cluster. The cluster is coordinated with 3 cysteines and 1 arginine.' .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; biotin biosynthesis; biotin from 7,8-diaminononanoate: step 2/2.' .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the radical SAM superfamily. Biotin synthase family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:49883 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:49883 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:49883 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:190135 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:190135 .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:190135 .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf chebi:190135 .
_:619714 a rdf:Statement ;
up:attribution _:619686 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:619715 a rdf:Statement ;
up:attribution _:619687 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:619716 a rdf:Statement ;
up:attribution _:619688 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:619717 a rdf:Statement ;
up:attribution _:619689 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:619718 a rdf:Statement ;
up:attribution _:619690 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:619719 a rdf:Statement ;
up:attribution _:619691 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:619720 a rdf:Statement ;
up:attribution _:619692 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:619721 a rdf:Statement ;
up:attribution _:619693 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:619722 a rdf:Statement ;
up:attribution _:619694 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:619723 a rdf:Statement ;
up:attribution _:619695 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1 .
_:619724 a rdf:Statement ;
up:attribution _:619696 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:619725 a rdf:Statement ;
up:attribution _:619697 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:93 .
_:619726 a rdf:Statement ;
up:attribution _:619698 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:619727 a rdf:Statement ;
up:attribution _:619699 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:619728 a rdf:Statement ;
up:attribution _:619700 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:619729 a rdf:Statement ;
up:attribution _:619701 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:619730 a rdf:Statement ;
up:attribution _:619702 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:619731 a rdf:Statement ;
up:attribution _:619703 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004076 .
_:619732 a rdf:Statement ;
up:attribution _:619704 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005506 .
_:619733 a rdf:Statement ;
up:attribution _:619705 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051536 .
_:619734 a rdf:Statement ;
up:attribution _:619706 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009102 .
_:619735 a rdf:Statement ;
up:source unirule:MF_01694 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:619736 a rdf:Statement ;
up:attribution _:619707 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:619737 a rdf:Statement ;
up:source unirule:MF_01694 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:619738 a rdf:Statement ;
up:attribution _:619708 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:619739 a rdf:Statement ;
up:source unirule:MF_01694 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:619740 a rdf:Statement ;
up:attribution _:619709 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:619741 a rdf:Statement ;
up:source unirule:MF_01694 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:619742 a rdf:Statement ;
up:attribution _:619710 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:619743 a rdf:Statement ;
up:source unirule:MF_01694 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:619744 a rdf:Statement ;
up:attribution _:619711 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:619745 a rdf:Statement ;
up:source unirule:MF_01694 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:619746 a rdf:Statement ;
up:attribution _:619712 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:619747 a rdf:Statement ;
up:source unirule:MF_01694 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:619748 a rdf:Statement ;
up:attribution _:619713 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01694
#Rule MF_01694 Created by:? on:2009-07-02 Modified by:Elisabeth Coudert on:2024-12-03
VALUES ?supertaxon59 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01694 .
?thisOrganism rdfs:subClassOf+ ?supertaxon59 .
BIND(URI(CONCAT(STR(?this), '#MF_01694a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01694a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01694a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01694a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01694a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01694a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01694a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01694a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch64 faldo:location ?templateMotifSequenceMatchRegionP1299665 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1299667 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12996MF_0169460 .
?templateMotifSequenceMatchRegionP1299665 faldo:begin ?templateMotifSequenceMatchBeginP1299666 .
?templateMotifSequenceMatchBeginP1299666 faldo:position ?templateMotifSequenceMatchBeginPositionP1299661 ;
faldo:reference isoform:P12996-1 .
?templateMotifSequenceProfileAlignmentOperationP1299667 edam:has_input signature:MF_01694 ;
rdf:type edam:operation_0300 .
?targetMotifMatch68 faldo:location ?targetMotifMatchRegionMatch69 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0169471 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12996MF_0169462 .
?targetMotifMatchRegionMatch69 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0169470 .
?targetMotifMatchRegionMatchBeginMF_0169470 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0169463 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0169471 edam:has_input signature:MF_01694 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12996MF_0169460, 1, (STRLEN(?templateMotifCigarP12996MF_0169460) - STRLEN(REPLACE(?templateMotifCigarP12996MF_0169460, CONCAT('^(?:-*[^-]){', STR(((53 - ?templateMotifSequenceMatchBeginPositionP1299661) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12996MF_0169462, 1, (STRLEN(?targetMotifMatchCigarP12996MF_0169462) - STRLEN(REPLACE(?targetMotifMatchCigarP12996MF_0169462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12996MF_0169462, 1, (STRLEN(?targetMotifMatchCigarP12996MF_0169462) - STRLEN(REPLACE(?targetMotifMatchCigarP12996MF_0169462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) .
BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0169463) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01694a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch79 faldo:location ?templateMotifSequenceMatchRegionP1299680 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1299682 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12996MF_0169475 .
?templateMotifSequenceMatchRegionP1299680 faldo:begin ?templateMotifSequenceMatchBeginP1299681 .
?templateMotifSequenceMatchBeginP1299681 faldo:position ?templateMotifSequenceMatchBeginPositionP1299676 ;
faldo:reference isoform:P12996-1 .
?templateMotifSequenceProfileAlignmentOperationP1299682 edam:has_input signature:MF_01694 ;
rdf:type edam:operation_0300 .
?targetMotifMatch83 faldo:location ?targetMotifMatchRegionMatch84 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0169486 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12996MF_0169477 .
?targetMotifMatchRegionMatch84 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0169485 .
?targetMotifMatchRegionMatchBeginMF_0169485 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0169478 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0169486 edam:has_input signature:MF_01694 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12996MF_0169475, 1, (STRLEN(?templateMotifCigarP12996MF_0169475) - STRLEN(REPLACE(?templateMotifCigarP12996MF_0169475, CONCAT('^(?:-*[^-]){', STR(((57 - ?templateMotifSequenceMatchBeginPositionP1299676) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12996MF_0169477, 1, (STRLEN(?targetMotifMatchCigarP12996MF_0169477) - STRLEN(REPLACE(?targetMotifMatchCigarP12996MF_0169477, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12996MF_0169477, 1, (STRLEN(?targetMotifMatchCigarP12996MF_0169477) - STRLEN(REPLACE(?targetMotifMatchCigarP12996MF_0169477, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) .
BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0169478) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01694a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch94 faldo:location ?templateMotifSequenceMatchRegionP1299695 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1299697 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12996MF_0169490 .
?templateMotifSequenceMatchRegionP1299695 faldo:begin ?templateMotifSequenceMatchBeginP1299696 .
?templateMotifSequenceMatchBeginP1299696 faldo:position ?templateMotifSequenceMatchBeginPositionP1299691 ;
faldo:reference isoform:P12996-1 .
?templateMotifSequenceProfileAlignmentOperationP1299697 edam:has_input signature:MF_01694 ;
rdf:type edam:operation_0300 .
?targetMotifMatch98 faldo:location ?targetMotifMatchRegionMatch99 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01694101 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12996MF_0169492 .
?targetMotifMatchRegionMatch99 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01694100 .
?targetMotifMatchRegionMatchBeginMF_01694100 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0169493 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01694101 edam:has_input signature:MF_01694 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12996MF_0169490, 1, (STRLEN(?templateMotifCigarP12996MF_0169490) - STRLEN(REPLACE(?templateMotifCigarP12996MF_0169490, CONCAT('^(?:-*[^-]){', STR(((60 - ?templateMotifSequenceMatchBeginPositionP1299691) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12996MF_0169492, 1, (STRLEN(?targetMotifMatchCigarP12996MF_0169492) - STRLEN(REPLACE(?targetMotifMatchCigarP12996MF_0169492, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12996MF_0169492, 1, (STRLEN(?targetMotifMatchCigarP12996MF_0169492) - STRLEN(REPLACE(?targetMotifMatchCigarP12996MF_0169492, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0169493) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01694a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionP12996110 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12996112 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12996MF_01694105 .
?templateMotifSequenceMatchRegionP12996110 faldo:begin ?templateMotifSequenceMatchBeginP12996111 .
?templateMotifSequenceMatchBeginP12996111 faldo:position ?templateMotifSequenceMatchBeginPositionP12996106 ;
faldo:reference isoform:P12996-1 .
?templateMotifSequenceProfileAlignmentOperationP12996112 edam:has_input signature:MF_01694 ;
rdf:type edam:operation_0300 .
?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01694116 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12996MF_01694107 .
?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01694115 .
?targetMotifMatchRegionMatchBeginMF_01694115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01694108 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01694116 edam:has_input signature:MF_01694 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12996MF_01694105, 1, (STRLEN(?templateMotifCigarP12996MF_01694105) - STRLEN(REPLACE(?templateMotifCigarP12996MF_01694105, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionP12996106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12996MF_01694107, 1, (STRLEN(?targetMotifMatchCigarP12996MF_01694107) - STRLEN(REPLACE(?targetMotifMatchCigarP12996MF_01694107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12996MF_01694107, 1, (STRLEN(?targetMotifMatchCigarP12996MF_01694107) - STRLEN(REPLACE(?targetMotifMatchCigarP12996MF_01694107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) .
BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_01694108) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER (REGEX('[CS]', SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01694a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch124 faldo:location ?templateMotifSequenceMatchRegionP12996125 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12996127 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12996MF_01694120 .
?templateMotifSequenceMatchRegionP12996125 faldo:begin ?templateMotifSequenceMatchBeginP12996126 .
?templateMotifSequenceMatchBeginP12996126 faldo:position ?templateMotifSequenceMatchBeginPositionP12996121 ;
faldo:reference isoform:P12996-1 .
?templateMotifSequenceProfileAlignmentOperationP12996127 edam:has_input signature:MF_01694 ;
rdf:type edam:operation_0300 .
?targetMotifMatch128 faldo:location ?targetMotifMatchRegionMatch129 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01694131 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12996MF_01694122 .
?targetMotifMatchRegionMatch129 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01694130 .
?targetMotifMatchRegionMatchBeginMF_01694130 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01694123 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01694131 edam:has_input signature:MF_01694 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12996MF_01694120, 1, (STRLEN(?templateMotifCigarP12996MF_01694120) - STRLEN(REPLACE(?templateMotifCigarP12996MF_01694120, CONCAT('^(?:-*[^-]){', STR(((128 - ?templateMotifSequenceMatchBeginPositionP12996121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12996MF_01694122, 1, (STRLEN(?targetMotifMatchCigarP12996MF_01694122) - STRLEN(REPLACE(?targetMotifMatchCigarP12996MF_01694122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12996MF_01694122, 1, (STRLEN(?targetMotifMatchCigarP12996MF_01694122) - STRLEN(REPLACE(?targetMotifMatchCigarP12996MF_01694122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) .
BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_01694123) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t134) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER (REGEX('[CS]', SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01694a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionP12996140 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12996142 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12996MF_01694135 .
?templateMotifSequenceMatchRegionP12996140 faldo:begin ?templateMotifSequenceMatchBeginP12996141 .
?templateMotifSequenceMatchBeginP12996141 faldo:position ?templateMotifSequenceMatchBeginPositionP12996136 ;
faldo:reference isoform:P12996-1 .
?templateMotifSequenceProfileAlignmentOperationP12996142 edam:has_input signature:MF_01694 ;
rdf:type edam:operation_0300 .
?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01694146 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12996MF_01694137 .
?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01694145 .
?targetMotifMatchRegionMatchBeginMF_01694145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01694138 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01694146 edam:has_input signature:MF_01694 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12996MF_01694135, 1, (STRLEN(?templateMotifCigarP12996MF_01694135) - STRLEN(REPLACE(?templateMotifCigarP12996MF_01694135, CONCAT('^(?:-*[^-]){', STR(((188 - ?templateMotifSequenceMatchBeginPositionP12996136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12996MF_01694137, 1, (STRLEN(?targetMotifMatchCigarP12996MF_01694137) - STRLEN(REPLACE(?targetMotifMatchCigarP12996MF_01694137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12996MF_01694137, 1, (STRLEN(?targetMotifMatchCigarP12996MF_01694137) - STRLEN(REPLACE(?targetMotifMatchCigarP12996MF_01694137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) .
BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_01694138) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01694a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionP12996155 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12996157 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12996MF_01694150 .
?templateMotifSequenceMatchRegionP12996155 faldo:begin ?templateMotifSequenceMatchBeginP12996156 .
?templateMotifSequenceMatchBeginP12996156 faldo:position ?templateMotifSequenceMatchBeginPositionP12996151 ;
faldo:reference isoform:P12996-1 .
?templateMotifSequenceProfileAlignmentOperationP12996157 edam:has_input signature:MF_01694 ;
rdf:type edam:operation_0300 .
?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01694161 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12996MF_01694152 .
?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01694160 .
?targetMotifMatchRegionMatchBeginMF_01694160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01694153 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01694161 edam:has_input signature:MF_01694 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12996MF_01694150, 1, (STRLEN(?templateMotifCigarP12996MF_01694150) - STRLEN(REPLACE(?templateMotifCigarP12996MF_01694150, CONCAT('^(?:-*[^-]){', STR(((260 - ?templateMotifSequenceMatchBeginPositionP12996151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12996MF_01694152, 1, (STRLEN(?targetMotifMatchCigarP12996MF_01694152) - STRLEN(REPLACE(?targetMotifMatchCigarP12996MF_01694152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12996MF_01694152, 1, (STRLEN(?targetMotifMatchCigarP12996MF_01694152) - STRLEN(REPLACE(?targetMotifMatchCigarP12996MF_01694152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) .
BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_01694153) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs1t164) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) .
FILTER (REGEX('[KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01694a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
}
"xsd:string |
